View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11471_low_31 (Length: 228)
Name: NF11471_low_31
Description: NF11471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11471_low_31 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 6 - 228
Target Start/End: Original strand, 43013407 - 43013641
Alignment:
| Q |
6 |
attataaagtataaaggttttgggaaagtaaacnnnnnnn-gttgttgtttaaggaattgggaaagtaacctagattctttaatggtaaagtatcgtcaa |
104 |
Q |
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| T |
43013407 |
attaaaaagtataaaggttttgggaaagtaaacttttttttgttgttgtttaaggaattgggaaagtaacctagattctttaatggtaaagtatcgtcaa |
43013506 |
T |
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| Q |
105 |
tcaaaactacaaaaattatcaaataatctttataaaacatattccctggtt-----------ataacatagttggatattttgttgaagaaataaaagat |
193 |
Q |
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| T |
43013507 |
tcaaaactacaaaaattatcaaataatctttataaaacataatccctcgttcaaaaaaaaaaaaaacatagttggatattttgttgaagaaataaaagat |
43013606 |
T |
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| Q |
194 |
agaatcgttataaagttataaacaacaaaaaatat |
228 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
43013607 |
agaatcgttataaagttataaacaacaaaaaatat |
43013641 |
T |
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