View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11471_low_4 (Length: 540)
Name: NF11471_low_4
Description: NF11471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11471_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 469; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 19 - 532
Target Start/End: Original strand, 38515879 - 38516392
Alignment:
| Q |
19 |
aatgccaccaccgctgccgctatcgttcttcaacaaatcggccatcacttctcctccggtaagttctgccgaaatgacactgttataattttccattgcg |
118 |
Q |
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| T |
38515879 |
aatgctaccaccgctgccgctatcgttcttcaacaaatcggccatcacttctcctccggtaagttctgccgaaatgacactgttataattttccattgcg |
38515978 |
T |
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| Q |
119 |
cttatcaagctgttaagaaatcaattgaagcttatgttatacccgttggtggctctgttattgaggttgaattaccttttccggttacttccaacgagga |
218 |
Q |
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| T |
38515979 |
cttatcaagctgttaagaaatcaattgaagcttatgttatacccgttggtggctctgttattgaggttgaattaccttttccggttaattccaacgagga |
38516078 |
T |
|
| Q |
219 |
aattatcgctgaatttaagaaagggattgaacgagggaaaattaacggtggtagagttaggttagcgataattgatcacattacgtcgatgccttcggtt |
318 |
Q |
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| T |
38516079 |
aattatcgcggaatttaagaaagggattgaacgagggaaaattaacggtggtagagttaggttagcgataatcgatcacattacgtcgatgccttcggtt |
38516178 |
T |
|
| Q |
319 |
gttattccggttagggaattgattcgggtttgtagagagaatgacgtggatcaggtttttgttgatggtgctcatgctttaggaagtatggaggttgatg |
418 |
Q |
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| T |
38516179 |
gttattccggttagggaattgattcgggtttgtagagagaatgaagtggatcaggtttttgttgatggtgctcatgctttaggaagtatggaggttgatg |
38516278 |
T |
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| Q |
419 |
ttaaagaaattggtgctgatttttatgttagtaatttgtataaatggnnnnnnncgccaccttcggttgcgtttatgtattgtaataagaataagaaatt |
518 |
Q |
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| T |
38516279 |
ttaaagaaattggtgctgatttttatgttagtaatttgtataaatggtttttttcgccaccttcggttgcgtttatgtattgtaataagaataagaaatt |
38516378 |
T |
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| Q |
519 |
gaatgatgtccatc |
532 |
Q |
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| T |
38516379 |
gaatgatgttcatc |
38516392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 275 - 393
Target Start/End: Original strand, 45783917 - 45784035
Alignment:
| Q |
275 |
ttaggttagcgataattgatcacattacgtcgatgccttcggttgttattccggttagggaattgattcgggtttgtagagagaatgacgtggatcaggt |
374 |
Q |
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|||||||||| | |||||||| |||| || ||||||| ||||| ||||| || | ||||||||||| | ||||||||||| | | || || ||||| |
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| T |
45783917 |
ttaggttagctgtgattgatcatgttacttctatgccttgtgttgtgattcctgtgaaggaattgattcagatttgtagagaggaaggtgttgaacaggt |
45784016 |
T |
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| Q |
375 |
ttttgttgatggtgctcat |
393 |
Q |
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| T |
45784017 |
ttttgttgatgctgctcat |
45784035 |
T |
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