View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11471_low_5 (Length: 509)
Name: NF11471_low_5
Description: NF11471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11471_low_5 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 479; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 1 - 491
Target Start/End: Complemental strand, 14542184 - 14541694
Alignment:
| Q |
1 |
gtggaatacgatggtaggaacaagggtttcttttgcaatcgagagttgaggaataaattacagaaacataacttacacgaatttataaaccatgtttaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14542184 |
gtggaatacgatggtaggaacaagggtttcttttgcaatcgagagttgaggaataaattacagaaacataacttacacgaatttataaaccatgtttaac |
14542085 |
T |
|
| Q |
101 |
aggtttgaagttggatgtctaaataattagcttaaaacatataacattttcaacttaattttaatagcaccgcatatacattttaagctatttgttacaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14542084 |
aggtttgaagttggatgtctaaataattagcttaaaacatataacattttcaacttaattttaatagcaccgcatatacattttaagctatttgttacaa |
14541985 |
T |
|
| Q |
201 |
tcaacttaaaacagtgttttgtaaatcaattttttgcaccattttaagccagttttatgtcaaactaactaattttaagccggttttgtgtaaaacaaga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14541984 |
tcaacttaaaacagtgttttgtaaatcaattttttgcaccattttaagccagttttatgtcaaactaactaattttaagccggttttgtgtaaaacaaga |
14541885 |
T |
|
| Q |
301 |
ataaaaatgatcattcagtgtttgaaatattacacttaataacaaaaatgcaacatactcataactaacgaattacaactctattgtactgcaattggtg |
400 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14541884 |
ataaaaatgatcattcggtgtttgaaatattacacttaataacgaaaatgcaacatactcataactaacgaattacaactctattgtactgcaattggtg |
14541785 |
T |
|
| Q |
401 |
cattggtccttgcagccttaatggtttttgctggttggtttaattatcacaaagctgctacaaaattggcttggttccaggatgtagaatc |
491 |
Q |
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| T |
14541784 |
cattggtccttgcagccttaatggtttttgctagttggtttaattatcacaaagctgctacaaaattggcttggttccaggatgtagaatc |
14541694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 361 - 491
Target Start/End: Complemental strand, 18177486 - 18177356
Alignment:
| Q |
361 |
ataactaacgaattacaactctattgtactgcaattggtgcattggtccttgcagccttaatggtttttgctggttggtttaattatcacaaagctgcta |
460 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
18177486 |
ataactaatgaattacaactctattgtactgcaattggtgcattggtctttgcagccttaatgctttttgctggttggtttcattatcacaaagctgctc |
18177387 |
T |
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| Q |
461 |
caaaattggcttggttccaggatgtagaatc |
491 |
Q |
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| T |
18177386 |
caaaattggcttggttccaagatgtagaatc |
18177356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 361 - 491
Target Start/End: Original strand, 13216608 - 13216738
Alignment:
| Q |
361 |
ataactaacgaattacaactctattgtactgcaattggtgcattggtccttgcagccttaatggtttttgctggttggtttaattatcacaaagctgcta |
460 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
13216608 |
ataactaatgaattacaactctattgtactgcaattggtgcattggtctttgcagccttaatgctttttgctggttggtttcattatcacaaagctgctc |
13216707 |
T |
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| Q |
461 |
caaaattggcttggttccaggatgtagaatc |
491 |
Q |
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||||||||||||||||||| ||||||||||| |
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| T |
13216708 |
caaaattggcttggttccaagatgtagaatc |
13216738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 361 - 491
Target Start/End: Complemental strand, 241101 - 240971
Alignment:
| Q |
361 |
ataactaacgaattacaactctattgtactgcaattggtgcattggtccttgcagccttaatggtttttgctggttggtttaattatcacaaagctgcta |
460 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||| ||||||||||||| ||| |
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| T |
241101 |
ataactagtgaattacaactctattgtactgcaattggtgcattggtttttgcagcgttaatgctttttgctggttggttccattatcacaaagccgctc |
241002 |
T |
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| Q |
461 |
caaaattggcttggttccaggatgtagaatc |
491 |
Q |
| |
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| |||||||| |||||||| ||||||||||| |
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| T |
241001 |
ccaaattggcctggttccaagatgtagaatc |
240971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 425 - 489
Target Start/End: Original strand, 50995584 - 50995648
Alignment:
| Q |
425 |
tttttgctggttggtttaattatcacaaagctgctacaaaattggcttggttccaggatgtagaa |
489 |
Q |
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| T |
50995584 |
tttttgctggttggtttcattatcacaaagctgctccaaaattggcttggttccaagatgtagaa |
50995648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 446 - 491
Target Start/End: Original strand, 50995483 - 50995528
Alignment:
| Q |
446 |
atcacaaagctgctacaaaattggcttggttccaggatgtagaatc |
491 |
Q |
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| T |
50995483 |
atcacaaagctgctccaaaattggcttggttccaagatgtagaatc |
50995528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 451 - 491
Target Start/End: Complemental strand, 50995586 - 50995546
Alignment:
| Q |
451 |
aaagctgctacaaaattggcttggttccaggatgtagaatc |
491 |
Q |
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| T |
50995586 |
aaagctgctccaaaattggcttggttccaagatgtagaatc |
50995546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 383 - 429
Target Start/End: Original strand, 50995433 - 50995479
Alignment:
| Q |
383 |
attgtactgcaattggtgcattggtccttgcagccttaatggttttt |
429 |
Q |
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||||||||||||||||||||||| || |||||||||| ||| ||||| |
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| T |
50995433 |
attgtactgcaattggtgcattgatctttgcagccttcatgtttttt |
50995479 |
T |
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