View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11471_low_7 (Length: 468)
Name: NF11471_low_7
Description: NF11471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11471_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 21 - 449
Target Start/End: Original strand, 43532675 - 43533105
Alignment:
| Q |
21 |
agttgttttcagattatttaatttttataatcacttatatgataaataatcatgttgtaaacatttaact-aagttgtttaccgaaacatgtcatgccta |
119 |
Q |
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| T |
43532675 |
agttgttttcagattatttaatttttataatcacttatatgataaataatcatgttataaacatttaacttaagttgtttatcgaaacatgtcatgccta |
43532774 |
T |
|
| Q |
120 |
gatctaaatacctcgagggataacaaaagatattagaataggacttgtgcccttgtttttctctatgcccttggcttatatatattaaaatgtgaagnnn |
219 |
Q |
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| T |
43532775 |
gatctaaatacctcgagggataacaaaagatattagaataggacttgtgcccttgtttttctctatgcccttggcttatatatattaaaatgtgaagaaa |
43532874 |
T |
|
| Q |
220 |
nnnngggcctggt-taaagaacaaaaaaccaagtgatctaccaaccaaacactcatcttttctttcttcctcacttcctacaaacaacaatggattcatc |
318 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43532875 |
aaaagggcctggtataaagaacaaaaaaccaagtgatctaccaaccaaacactcatcttttctttcttcctcacttcctacaaacaacaatggattcatc |
43532974 |
T |
|
| Q |
319 |
accaaatctcagacatcatgccaaggatgttccaacacaatgtgaaaccttccttcctggtaagtatccatcttctcgccgaaccgcttcattctcctct |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
43532975 |
accaaatctcagacatcatgccaaggatgttccaacacaatgtgaaaccttccttcccggtaagtatccatcttctcgccgaaccgcttcattctcctct |
43533074 |
T |
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| Q |
419 |
tattcatcatcactttcaccttcatcttctt |
449 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
43533075 |
tattcatcatcactttcaccttcatcttctt |
43533105 |
T |
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