View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11471_low_8 (Length: 452)
Name: NF11471_low_8
Description: NF11471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11471_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 437
Target Start/End: Complemental strand, 43102241 - 43101796
Alignment:
| Q |
1 |
tgtggagca-gcacagaccaaggggtggcttctaccatcatttgattcctctgccccagatgtctagctaaactacccagggcatgttgtcctcccattg |
99 |
Q |
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| T |
43102241 |
tgtggagcatgcaaagaccaaggggtggcttctaccatcatttgattcctctgccccagatgtctagctaaactacccagggcatgtagtcctcccattg |
43102142 |
T |
|
| Q |
100 |
aagatgggataatctgggattgtttgacatggtcctttccatttgctcttttacttgacatttttcttctagaatcatttcactgaggttcctgttactt |
199 |
Q |
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| T |
43102141 |
aagatgggataatctgggattgtttgacatggtcctttccatttgctcttttacttgacatttttcttctagaatcatttcactgaggtttctgttactt |
43102042 |
T |
|
| Q |
200 |
cggtcattgtaaaaagttggtcttatttcatttacagcttttcaggataatgttgcatcaagaggtagttgtcttttaacatttactctctctggatgaa |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
43102041 |
cggtcattgtaaaaagttggtcttatttcatttacagcttttcaggataatgttgcatcaagaggtagttgtcttttaacatttact--ctctggatgaa |
43101944 |
T |
|
| Q |
300 |
gggtctgttggttgtgcacttttacaccattagatcaagtttagtttgaaagatatatcaattggctactatttttagattcctggtttcggtctccaat |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
43101943 |
gggtctgttggttgtgcacttttacaccattagatcaagtttagtttgaaagatatatcaaatggctactatttttagattcctggtttcggtctccaat |
43101844 |
T |
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| Q |
400 |
tttcaaaat----------tttcccacctatgcatgcttaatgtgatg |
437 |
Q |
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||||||||| ||||||||||||||||||||||||||||| |
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| T |
43101843 |
tttcaaaatatttaaaaaatttcccacctatgcatgcttaatgtgatg |
43101796 |
T |
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