View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11471_low_9 (Length: 402)

Name: NF11471_low_9
Description: NF11471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11471_low_9
NF11471_low_9
[»] chr8 (12 HSPs)
chr8 (142-384)||(38309584-38309831)
chr8 (142-384)||(38317595-38317842)
chr8 (142-384)||(38300942-38301189)
chr8 (146-384)||(38306846-38307089)
chr8 (146-384)||(38314189-38314432)
chr8 (197-379)||(38326451-38326638)
chr8 (223-381)||(38321770-38321928)
chr8 (1-73)||(38309446-38309518)
chr8 (1-72)||(38300799-38300870)
chr8 (1-72)||(38317449-38317520)
chr8 (1-72)||(38321544-38321615)
chr8 (1-72)||(38306696-38306767)
[»] chr4 (2 HSPs)
chr4 (146-384)||(38849494-38849737)
chr4 (1-72)||(38849816-38849887)


Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-125; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 142 - 384
Target Start/End: Original strand, 38309584 - 38309831
Alignment:
Q  142 cacgtgtgagatataataggaattgaaagtgcaccaacggcagcttgttactgaaactgaaaaatctcaacttgatgtttact-----gagtcaaatttg 236  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||    
T  38309584 cacgtgtgagatataataggaattgaaagtgcaccaacggcagcttgttactgaaactgaaaaatctcaacttgatgtttacttagatgagtcaaatttg 38309683  T
Q  237 gattttcattgttatgaagatatggatgtattacagtggtggaagagaaataataatcgatttccggatctatcaattctggcctgcgacttgttaagtt 336  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38309684 gattttcattgttatgaagatatggatgtattacagtggtggaagagaaataataatcgatttccggatctatcaattctggcctgcgacttgttaagtt 38309783  T
Q  337 ttcccattaccactgtcgcatctgattttgagttttgcatgggctcac 384  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  38309784 ttcccattaccactgtcgcatctgattttgagttttgcatgggctcac 38309831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 142 - 384
Target Start/End: Original strand, 38317595 - 38317842
Alignment:
Q  142 cacgtgtgagatataataggaattgaaagtgcaccaacggcagcttgttactgaaactgaaaaatctcaacttgatgtttact-----gagtcaaatttg 236  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||     ||||||||||||    
T  38317595 cacgtgtgaaatataataggaattgaaagtgcaccaacggcagcttgttactgaaactagaaaatctcaacttgatgtttacttagatgagtcaaatttg 38317694  T
Q  237 gattttcattgttatgaagatatggatgtattacagtggtggaagagaaataataatcgatttccggatctatcaattctggcctgcgacttgttaagtt 336  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||  | || |||||||||||||||     
T  38317695 gattttcattgttatgaagatatggatgtattacaatggtggaagagaaataataatcgatttccggatctatcaatattagcttgcgacttgttaagtg 38317794  T
Q  337 ttcccattaccactgtcgcatctgattttgagttttgcatgggctcac 384  Q
    |||||||| ||||||| || ||||||| ||| ||||||||||| ||||    
T  38317795 ttcccattgccactgttgcttctgattctgaattttgcatgggttcac 38317842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 142 - 384
Target Start/End: Original strand, 38300942 - 38301189
Alignment:
Q  142 cacgtgtgagatataataggaattgaaagtgcaccaacggcagcttgttactgaaactgaaaaatctcaacttgatgtttact-----gagtcaaatttg 236  Q
    ||||||||| |||||||||||||||||||||||||| |  |||||||||||||||||||  |||||| |||||||||||||||     ||||||||||||    
T  38300942 cacgtgtgaaatataataggaattgaaagtgcaccatcaacagcttgttactgaaactgggaaatctgaacttgatgtttacttagatgagtcaaatttg 38301041  T
Q  237 gattttcattgttatgaagatatggatgtattacagtggtggaagagaaataataatcgatttccggatctatcaattctggcctgcgacttgttaagtt 336  Q
    ||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||  |||| |||||||||||||||     
T  38301042 gattttcgttgtgatgaagatatggatgtattacagtggtggaagagtaataataatcgatttccagatctatcaatattggcttgcgacttgttaagtg 38301141  T
Q  337 ttcccattaccactgtcgcatctgattttgagttttgcatgggctcac 384  Q
    ||||||||||||| ||||| || |||||||||||||||||||||||||    
T  38301142 ttcccattaccaccgtcgcttccgattttgagttttgcatgggctcac 38301189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 146 - 384
Target Start/End: Original strand, 38306846 - 38307089
Alignment:
Q  146 tgtgagatataataggaattgaaagtgcaccaacggcagcttgttactgaaactgaaaaatctcaacttgatgtttact-----gagtcaaatttggatt 240  Q
    ||||| ||| |||||||||||||| || | || |  ||||||||||| ||||||||||| |||||||||||||||||||     |||||| |||||| ||    
T  38306846 tgtgaaatacaataggaattgaaaatgaaacatcaacagcttgttaccgaaactgaaaagtctcaacttgatgtttacttagatgagtcagatttgggtt 38306945  T
Q  241 ttcattgttatgaagatatggatgtattacagtggtggaagagaaataataatcgatttccggatctatcaattctggcctgcgacttgttaagttttcc 340  Q
    ||| |||| |||||||||||||||||||||| ||||||||||| |||||| |||||| ||| ||||||||||| ||||| || |||||||||||| ||||    
T  38306946 ttctttgtaatgaagatatggatgtattacaatggtggaagagtaataatgatcgatatccagatctatcaatactggcttgtgacttgttaagtgttcc 38307045  T
Q  341 cattaccactgtcgcatctgattttgagttttgcatgggctcac 384  Q
    |||||||||||| || ||||||||||| ||||||||||||||||    
T  38307046 cattaccactgtggcttctgattttgaattttgcatgggctcac 38307089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 146 - 384
Target Start/End: Original strand, 38314189 - 38314432
Alignment:
Q  146 tgtgagatataataggaattgaaagtgcaccaacggcagcttgttactgaaactgaaaaatctcaacttgatgtttact-----gagtcaaatttggatt 240  Q
    ||||| |||||||| ||||||||| ||||||| |  |||||||||||| |||||| ||| ||| |||||||||||||||     |||||| ||||| |||    
T  38314189 tgtgaaatataatatgaattgaaaatgcaccatcaacagcttgttactaaaactggaaagtctgaacttgatgtttactttgacgagtcagatttgaatt 38314288  T
Q  241 ttcattgttatgaagatatggatgtattacagtggtggaagagaaataataatcgatttccggatctatcaattctggcctgcgacttgttaagttttcc 340  Q
    ||  || |||||||||||||||||||||||| ||||||||||| |||   ||||||||||| |||||||||||  |||| ||||||||||||||| ||||    
T  38314289 ttggttcttatgaagatatggatgtattacaatggtggaagagtaattcaaatcgatttccagatctatcaatattggcttgcgacttgttaagtgttcc 38314388  T
Q  341 cattaccactgtcgcatctgattttgagttttgcatgggctcac 384  Q
    |||| |||| || || ||||||||||| ||||||||||||||||    
T  38314389 cattgccacagtggcttctgattttgaattttgcatgggctcac 38314432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 197 - 379
Target Start/End: Original strand, 38326451 - 38326638
Alignment:
Q  197 actgaaaaatctcaacttgatgtttact-----gagtcaaatttggattttcattgttatgaagatatggatgtattacagtggtggaagagaaataata 291  Q
    |||| ||| |||||||||||||||||||     || |||| ||||||||||| |||||||||||| |||||||||||| | ||||||||||| ||| |||    
T  38326451 actggaaagtctcaacttgatgtttacttggatgaatcaagtttggattttcgttgttatgaagacatggatgtattagaatggtggaagagtaattata 38326550  T
Q  292 atcgatttccggatctatcaattctggcctgcgacttgttaagttttcccattaccactgtcgcatctgattttgagttttgcatggg 379  Q
    || ||||||| |||||||||||| |||| || |||||||||||| |||||||| ||||||||||||||||||| || |||||||||||    
T  38326551 attgatttccagatctatcaattttggcttgtgacttgttaagtgttcccattgccactgtcgcatctgatttggaattttgcatggg 38326638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 223 - 381
Target Start/End: Original strand, 38321770 - 38321928
Alignment:
Q  223 ctgagtcaaatttggattttcattgttatgaagatatggatgtattacagtggtggaagagaaataataatcgatttccggatctatcaattctggcctg 322  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||  ||||  |    
T  38321770 ctgagtcaaatttggattttcgttgttatgaagatatggatgtattacagtggtggaagagtaataataatcgatttccagatctttcaatattggctcg 38321869  T
Q  323 cgacttgttaagttttcccattaccactgtcgcatctgattttgagttttgcatgggct 381  Q
     |||||||||||| ||||| ||| |||| |||| |||||||| || |||||||| ||||    
T  38321870 agacttgttaagtgttcccgttaacactatcgcttctgatttggatttttgcataggct 38321928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 38309446 - 38309518
Alignment:
Q  1 caggaccaatcttctagtgtgccattgcaaaagaagttaaagtctttatctcagggcctatttgatgtaagta 73  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38309446 caggaccaatcttctagtgtgccattgcaaaagaagttaaagtctttatctcagggcctatttgatgtaagta 38309518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 38300799 - 38300870
Alignment:
Q  1 caggaccaatcttctagtgtgccattgcaaaagaagttaaagtctttatctcagggcctatttgatgtaagt 72  Q
    |||||||||||||||||  ||||||| ||| |||||||||| ||||||||| | ||||||||||||||||||    
T  38300799 caggaccaatcttctagcatgccatttcaagagaagttaaactctttatctgacggcctatttgatgtaagt 38300870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 38317449 - 38317520
Alignment:
Q  1 caggaccaatcttctagtgtgccattgcaaaagaagttaaagtctttatctcagggcctatttgatgtaagt 72  Q
    ||||||||||||||||   |||||||||||||||| ||||||||||||||||| ||||||||  ||||||||    
T  38317449 caggaccaatcttctaccatgccattgcaaaagaaattaaagtctttatctcacggcctattcaatgtaagt 38317520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 38321544 - 38321615
Alignment:
Q  1 caggaccaatcttctagtgtgccattgcaaaagaagttaaagtctttatctcagggcctatttgatgtaagt 72  Q
    |||||| ||||||||||  |||||||||||||||| || ||||||| |||||| ||||||||||||||||||    
T  38321544 caggacgaatcttctagcatgccattgcaaaagaaattgaagtcttcatctcacggcctatttgatgtaagt 38321615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 38306696 - 38306767
Alignment:
Q  1 caggaccaatcttctagtgtgccattgcaaaagaagttaaagtctttatctcagggcctatttgatgtaagt 72  Q
    |||| |||||||||||   |||||||||||||||| |   ||||||||||||| ||||||||||||||||||    
T  38306696 cagggccaatcttctaccatgccattgcaaaagaactctgagtctttatctcatggcctatttgatgtaagt 38306767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 124; Significance: 1e-63; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 146 - 384
Target Start/End: Complemental strand, 38849737 - 38849494
Alignment:
Q  146 tgtgagatataataggaattgaaagtgcaccaacggcagcttgttactgaaactgaaaaatctcaacttgatgtttact-----gagtcaaatttggatt 240  Q
    ||||| || ||||||||||||||||||||||| | ||||||||||||  |||||| ||| |||||||||||||||||||     ||||||  ||||||||    
T  38849737 tgtgaaatgtaataggaattgaaagtgcaccatcagcagcttgttaccaaaactggaaagtctcaacttgatgtttacttagatgagtcagttttggatt 38849638  T
Q  241 ttcattgttatgaagatatggatgtattacagtggtggaagagaaataataatcgatttccggatctatcaattctggcctgcgacttgttaagttttcc 340  Q
    ||| |||||||| ||| |||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||  |||||||||||||||||||| ||||    
T  38849637 ttcgttgttatgcagaaatggatgtattacaatggtggaagagtaataatgatcgatttccggatctatcaatattggcctgcgacttgttaagtgttcc 38849538  T
Q  341 cattaccactgtcgcatctgattttgagttttgcatgggctcac 384  Q
    |||| || |||| || ||||||| ||| ||||||||||||||||    
T  38849537 cattgccgctgtagcttctgattctgaattttgcatgggctcac 38849494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 38849887 - 38849816
Alignment:
Q  1 caggaccaatcttctagtgtgccattgcaaaagaagttaaagtctttatctcagggcctatttgatgtaagt 72  Q
    |||||||||||||||||  ||||||| |||||||| ||||||||||||||||| ||||||||||||||||||    
T  38849887 caggaccaatcttctagcatgccattacaaaagaaattaaagtctttatctcatggcctatttgatgtaagt 38849816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University