View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11472_high_1 (Length: 517)
Name: NF11472_high_1
Description: NF11472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11472_high_1 |
 | |
|
| [»] scaffold0642 (1 HSPs) |
| | |
|
| [»] scaffold0345 (1 HSPs) |
| | |
|
| [»] scaffold0105 (1 HSPs) |
| | |
|
| [»] scaffold0016 (1 HSPs) |
| | |
|
| [»] scaffold0224 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 390; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 26 - 513
Target Start/End: Original strand, 44497303 - 44497783
Alignment:
| Q |
26 |
gttttgtaggaaaaaatttggtttt-atttaaagattgacacttgagaattttggagaaagatttgaaaaagagaggttagtttgctgactggtaagtat |
124 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44497303 |
gttttgtaggaaaaaatttggtttttatttaaagattgacacttgagtattttggagaaagatttgaaaaagagaggttagtttgctgactggtaagtat |
44497402 |
T |
|
| Q |
125 |
tagaactttggagagagatttggaaaagatgtcagttcatcatctttagtattggaataatatgtcaatgaattatattttccatgccttttatgttgtc |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
44497403 |
tagaactttggagagagatttggaaaagatgtcagttcatcatctttagtattggaataatatgtcaatgaattatattttccatgccttttatgctgtc |
44497502 |
T |
|
| Q |
225 |
actttccaattttattttaccattttgtgcagaaggtgtcaaatgtagaaaatttggatttggattggttttacatagtgttttctgagttaattattct |
324 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44497503 |
actttccaattttgttttaccattttgtgcagaaggtgtcaaatgtagaaaatttggatttggattggttttacatagtgttttctgagttaattattct |
44497602 |
T |
|
| Q |
325 |
atttcagctacataactttcttctaactttttctttgttataaacaatgattatataacaatgattatgttgtcacttttccttgatttatcatagatta |
424 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | | ||||| | || | | ||||| |||||||||||||||||||||| |
|
|
| T |
44497603 |
atttcagctacataactttcttctaactttttctttgttataaa-agt-----tataatattg--ttttctgtcaagcttccttgatttatcatagatta |
44497694 |
T |
|
| Q |
425 |
tataacaatgatttaaactaacttcggttggatcatataaggttcattccatatcaagttaaatgttaaagtatcctcctttgcttctc |
513 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
44497695 |
tataacaatgatttaaactaacttcggttggatcatataaggttcattccatatcaagttaaatgttaaagtatcctcctttgtttctc |
44497783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 286 - 368
Target Start/End: Complemental strand, 24469694 - 24469613
Alignment:
| Q |
286 |
ggattggttttacatagtgttttctgagttaattattctatttcagctacataactttcttctaactttttctttgttataaa |
368 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
24469694 |
ggattggttttacatagc-ttttctgagctaattattctatttcagctacataagtttcttctaaatttttctttgttataaa |
24469613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 143 - 223
Target Start/End: Complemental strand, 24469811 - 24469731
Alignment:
| Q |
143 |
tttggaaaagatgtcagttcatcatctttagtattggaataatatgtcaatgaattatattttccatgccttttatgttgt |
223 |
Q |
| |
|
|||| ||||||||||||| |||| ||||||| |||||| ||||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
24469811 |
tttgtaaaagatgtcagtctatcacctttagtgttggaagaatatgtcaatgaattatattatccatgcctttcatgttgt |
24469731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0642 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: scaffold0642
Description:
Target: scaffold0642; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 26 - 513
Target Start/End: Original strand, 5816 - 6296
Alignment:
| Q |
26 |
gttttgtaggaaaaaatttggtttt-atttaaagattgacacttgagaattttggagaaagatttgaaaaagagaggttagtttgctgactggtaagtat |
124 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5816 |
gttttgtaggaaaaaatttggtttttatttagtgattgacacttgagtattttggagaaagatttgaaaaagagaggttagtttgctgactggtaagtat |
5915 |
T |
|
| Q |
125 |
tagaactttggagagagatttggaaaagatgtcagttcatcatctttagtattggaataatatgtcaatgaattatattttccatgccttttatgttgtc |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5916 |
tagaactttggagagagatttggaaaagatgtcagttcatcatctttagtattggaataatatgtcaatgaattatattttccatgccttttatgttgtc |
6015 |
T |
|
| Q |
225 |
actttccaattttattttaccattttgtgcagaaggtgtcaaatgtagaaaatttggatttggattggttttacatagtgttttctgagttaattattct |
324 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6016 |
actttccaatttttttttaccattttgtgcagaaggtgtcaaatgtagaaaatttggatttggattggttttacatagtgttttctgagttaattattct |
6115 |
T |
|
| Q |
325 |
atttcagctacataactttcttctaactttttctttgttataaacaatgattatataacaatgattatgttgtcacttttccttgatttatcatagatta |
424 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | | ||||| | || | | ||||| |||||||||||||||||||||| |
|
|
| T |
6116 |
atttcagctacataactttcttctaactttttctttgttataaa-agt-----tataatattg--ttttctgtcaagcttccttgatttatcatagatta |
6207 |
T |
|
| Q |
425 |
tataacaatgatttaaactaacttcggttggatcatataaggttcattccatatcaagttaaatgttaaagtatcctcctttgcttctc |
513 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
6208 |
tataacaatgatttaaactaacttcagttagatcatacaaggttcattccatatcaagttaaatgttaaagtatcctcctttgtttctc |
6296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0345 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: scaffold0345
Description:
Target: scaffold0345; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 26 - 513
Target Start/End: Original strand, 15728 - 16208
Alignment:
| Q |
26 |
gttttgtaggaaaaaatttggtttt-atttaaagattgacacttgagaattttggagaaagatttgaaaaagagaggttagtttgctgactggtaagtat |
124 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15728 |
gttttgtaggaaaaaatttggtttttatttagtgattgacacttgagtattttggagaaagatttgaaaaagagaggttagtttgctgactggtaagtat |
15827 |
T |
|
| Q |
125 |
tagaactttggagagagatttggaaaagatgtcagttcatcatctttagtattggaataatatgtcaatgaattatattttccatgccttttatgttgtc |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15828 |
tagaactttggagagagatttggaaaagatgtcagttcatcatctttagtattggaataatatgtcaatgaattatattttccatgccttttatgttgtc |
15927 |
T |
|
| Q |
225 |
actttccaattttattttaccattttgtgcagaaggtgtcaaatgtagaaaatttggatttggattggttttacatagtgttttctgagttaattattct |
324 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15928 |
actttccaatttttttttaccattttgtgcagaaggtgtcaaatgtagaaaatttggatttggattggttttacatagtgttttctgagttaattattct |
16027 |
T |
|
| Q |
325 |
atttcagctacataactttcttctaactttttctttgttataaacaatgattatataacaatgattatgttgtcacttttccttgatttatcatagatta |
424 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | | ||||| | || | | ||||| |||||||||||||||||||||| |
|
|
| T |
16028 |
atttcagctacataactttcttctaactttttctttgttataaa-agt-----tataatattg--ttttctgtcaagcttccttgatttatcatagatta |
16119 |
T |
|
| Q |
425 |
tataacaatgatttaaactaacttcggttggatcatataaggttcattccatatcaagttaaatgttaaagtatcctcctttgcttctc |
513 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
16120 |
tataacaatgatttaaactaacttcagttagatcatacaaggttcattccatatcaagttaaatgttaaagtatcctcctttgtttctc |
16208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: scaffold0105
Description:
Target: scaffold0105; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 26 - 513
Target Start/End: Complemental strand, 23253 - 22773
Alignment:
| Q |
26 |
gttttgtaggaaaaaatttggtttt-atttaaagattgacacttgagaattttggagaaagatttgaaaaagagaggttagtttgctgactggtaagtat |
124 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23253 |
gttttgtaggaaaaaatttggtttttatttagtgattgacacttgagtattttggagaaagatttgaaaaagagaggttagtttgctgactggtaagtat |
23154 |
T |
|
| Q |
125 |
tagaactttggagagagatttggaaaagatgtcagttcatcatctttagtattggaataatatgtcaatgaattatattttccatgccttttatgttgtc |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23153 |
tagaactttggagagagatttggaaaagatgtcagttcatcatctttagtattggaataatatgtcaatgaattatattttccatgccttttatgttgtc |
23054 |
T |
|
| Q |
225 |
actttccaattttattttaccattttgtgcagaaggtgtcaaatgtagaaaatttggatttggattggttttacatagtgttttctgagttaattattct |
324 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23053 |
actttccaatttttttttaccattttgtgcagaaggtgtcaaatgtagaaaatttggatttggattggttttacatagtgttttctgagttaattattct |
22954 |
T |
|
| Q |
325 |
atttcagctacataactttcttctaactttttctttgttataaacaatgattatataacaatgattatgttgtcacttttccttgatttatcatagatta |
424 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | | ||||| | || | | ||||| |||||||||||||||||||||| |
|
|
| T |
22953 |
atttcagctacataactttcttctaactttttctttgttataaa-agt-----tataatattg--ttttctgtcaagcttccttgatttatcatagatta |
22862 |
T |
|
| Q |
425 |
tataacaatgatttaaactaacttcggttggatcatataaggttcattccatatcaagttaaatgttaaagtatcctcctttgcttctc |
513 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
22861 |
tataacaatgatttaaactaacttcagttagatcatacaaggttcattccatatcaagttaaatgttaaagtatcctcctttgtttctc |
22773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 26 - 513
Target Start/End: Complemental strand, 52140 - 51660
Alignment:
| Q |
26 |
gttttgtaggaaaaaatttggtttt-atttaaagattgacacttgagaattttggagaaagatttgaaaaagagaggttagtttgctgactggtaagtat |
124 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52140 |
gttttgtaggaaaaaatttggtttttatttagtgattgacacttgagtattttggagaaagatttgaaaaagagaggttagtttgctgactggtaagtat |
52041 |
T |
|
| Q |
125 |
tagaactttggagagagatttggaaaagatgtcagttcatcatctttagtattggaataatatgtcaatgaattatattttccatgccttttatgttgtc |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52040 |
tagaactttggagagagatttggaaaagatgtcagttcatcatctttagtattggaataatatgtcaatgaattatattttccatgccttttatgttgtc |
51941 |
T |
|
| Q |
225 |
actttccaattttattttaccattttgtgcagaaggtgtcaaatgtagaaaatttggatttggattggttttacatagtgttttctgagttaattattct |
324 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51940 |
actttccaattttgttttaccattttgtgcagaaggtgtcaaatgtagaaaatttggatttggattggttttacatagtgttttctgagttaattattct |
51841 |
T |
|
| Q |
325 |
atttcagctacataactttcttctaactttttctttgttataaacaatgattatataacaatgattatgttgtcacttttccttgatttatcatagatta |
424 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | | ||||| | || | | ||||| |||||||||||||||||||||| |
|
|
| T |
51840 |
atttcagctacataactttcttctaactttttctttgttataaa-agt-----tataatattg--ttttctgtcaagcttccttgatttatcatagatta |
51749 |
T |
|
| Q |
425 |
tataacaatgatttaaactaacttcggttggatcatataaggttcattccatatcaagttaaatgttaaagtatcctcctttgcttctc |
513 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
51748 |
tataacaatgatttaaactaacttcagttggatcatgtaaggttcaatccatatcaagttaaatgttaaagtatcctcctttgtttctc |
51660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 374; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 26 - 513
Target Start/End: Original strand, 3380036 - 3380516
Alignment:
| Q |
26 |
gttttgtaggaaaaaatttggtttt-atttaaagattgacacttgagaattttggagaaagatttgaaaaagagaggttagtttgctgactggtaagtat |
124 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3380036 |
gttttgtaggaaaaaatttggtttttatttagtgattgacacttgagtattttggagaaagatttgaaaaagagaggttagtttgctgactggtaagtat |
3380135 |
T |
|
| Q |
125 |
tagaactttggagagagatttggaaaagatgtcagttcatcatctttagtattggaataatatgtcaatgaattatattttccatgccttttatgttgtc |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3380136 |
tagaactttggagagagatttggaaaagatgtcagttcatcatctttagtattggaattatatgtcaatgaattatattttccatgccttttatgttgtc |
3380235 |
T |
|
| Q |
225 |
actttccaattttattttaccattttgtgcagaaggtgtcaaatgtagaaaatttggatttggattggttttacatagtgttttctgagttaattattct |
324 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3380236 |
actttccaattttgttttaccattttgtgcagaaggtgtcaaatgtagaaaatttggatttggattggttttacatagtgttttctgagttaattattct |
3380335 |
T |
|
| Q |
325 |
atttcagctacataactttcttctaactttttctttgttataaacaatgattatataacaatgattatgttgtcacttttccttgatttatcatagatta |
424 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | | ||||| | || | | ||||| |||||||||||||||||||||| |
|
|
| T |
3380336 |
atttcagctacataactttcttctaactttttctttgttataaa-agt-----tataatattg--ttttctgtcaagcttccttgatttatcatagatta |
3380427 |
T |
|
| Q |
425 |
tataacaatgatttaaactaacttcggttggatcatataaggttcattccatatcaagttaaatgttaaagtatcctcctttgcttctc |
513 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
3380428 |
tataacaatgatttaaactaactacagttggatcatataaggttcattccatatcaagttaaatgttaaagtatcctcctttgtttctc |
3380516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 28 - 349
Target Start/End: Complemental strand, 42715417 - 42715111
Alignment:
| Q |
28 |
tttgtaggaaaaaatttggtttt-atttaaagattgacacttgagaattttggagaaagatttgaaaaagagaggttagtttgctgactggtaagtatta |
126 |
Q |
| |
|
|||||||||||| ||||||||| ||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||| || |||| | || || |
|
|
| T |
42715417 |
tttgtaggaaaatctttggtttttatttagtgattgacacttgagtattttggagaaagatttgaaaaacagaggttagtttactaactgacatttacta |
42715318 |
T |
|
| Q |
127 |
gaactttggagagagatttggaaaagatgtcagttcatcatctttagtattggaataatatgtcaatgaattatattttccatgccttttatgttgtcac |
226 |
Q |
| |
|
||||||| |||||||||||| ||| ||||||||| ||||| ||||| |||||||| ||||||| | ||||||||| ||| |||||||||| |
|
|
| T |
42715317 |
gaactttagagagagatttgaaaatgatgtcagtccatcacctttattattggaagaatatgtgatcaaattatatt---------tttcatgttgtcac |
42715227 |
T |
|
| Q |
227 |
tttccaattttattttaccattttgtgcagaaggtgtcaaatgtagaaaatttggatttggattggttttacatagtgttttctgagttaattattctat |
326 |
Q |
| |
|
|||||||||| |||||||||||||| || ||||||||||||||||||| | ||| ||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
42715226 |
tttccaatttggttttaccattttgtacaaaaggtgtcaaatgtagaaa------acttgaattggttttacat-taattttatgagttaattattctat |
42715134 |
T |
|
| Q |
327 |
ttcagctacataactttcttcta |
349 |
Q |
| |
|
||||| ||||||||||||||||| |
|
|
| T |
42715133 |
ttcagttacataactttcttcta |
42715111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 173; Significance: 8e-93; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 32 - 368
Target Start/End: Complemental strand, 36931119 - 36930790
Alignment:
| Q |
32 |
taggaaaaaatttggtttt-atttaaagattgacacttgagaattttggagaaagatttgaaaaagagaggttagtttgctgactggtaagtattagaac |
130 |
Q |
| |
|
|||||||||| |||||||| ||||| |||||| ||||||| |||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
36931119 |
taggaaaaaaattggtttttatttagtgattgagacttgagtatttcagagaaagatttgaaaaagagaggttagtttactgactgataagtattagaac |
36931020 |
T |
|
| Q |
131 |
tttggagagagatttggaaaagatgtcagttcatcatctttagtattggaataatatgtcaatgaattatattttccatgccttttatgttgtcactttc |
230 |
Q |
| |
|
||||||| |||||| |||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||| ||| | |||||||| |
|
|
| T |
36931019 |
gttggagaatgatttgaaaaacatgtcagttcatca-ctttagtattggaagaatatgtcaatgaattatatttt-catgcctttcatgctatcactttc |
36930922 |
T |
|
| Q |
231 |
caattttattttaccattttgtgc-agaaggtgtcaaatgtagaaaatttggatttggattggttttacatagtgttttctgagttaattattctatttc |
329 |
Q |
| |
|
||| | | |||||||||||||||| | || |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |||||| |
|
|
| T |
36930921 |
caaatattttttaccattttgtgcaaaaaagtgtcaaatgtagaaaatttgg-------ttggttttacatagttttttctgagttaattattatatttc |
36930829 |
T |
|
| Q |
330 |
agctacataactttcttctaactttttctttgttataaa |
368 |
Q |
| |
|
| ||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
36930828 |
atctacataactttcttctaattttttctttgttataaa |
36930790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 415 - 478
Target Start/End: Complemental strand, 36930762 - 36930699
Alignment:
| Q |
415 |
tcatagattatataacaatgatttaaactaacttcggttggatcatataaggttcattccatat |
478 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
36930762 |
tcattgattatataacaatgatttaaactaacttcaattggatcatgtaaggttcattccatat |
36930699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0224 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: scaffold0224
Description:
Target: scaffold0224; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 28 - 189
Target Start/End: Complemental strand, 23308 - 23146
Alignment:
| Q |
28 |
tttgtaggaaaaaatttggtttt-atttaaagattgacacttgagaattttggagaaagatttgaaaaagagaggttagtttgctgactggtaagtatta |
126 |
Q |
| |
|
|||||||||||| ||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| || |||| | || || |
|
|
| T |
23308 |
tttgtaggaaaatctttggtttttatttagtgattgacacttgagtattttggagaaagatttgaaaaagagaggttagtttactaactgacatatacta |
23209 |
T |
|
| Q |
127 |
gaactttggagagagatttggaaaagatgtcagttcatcatctttagtattggaataatatgt |
189 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||| |||| ||||| |||| ||| ||||||| |
|
|
| T |
23208 |
gaactttagagagagatttgaaaaagatgtcagttgatcacctttattattcgaagaatatgt |
23146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 28 - 189
Target Start/End: Complemental strand, 42836227 - 42836065
Alignment:
| Q |
28 |
tttgtaggaaaaaatttggtttt-atttaaagattgacacttgagaattttggagaaagatttgaaaaagagaggttagtttgctgactggtaagtatta |
126 |
Q |
| |
|
|||||||||||| ||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| || |||| | || || |
|
|
| T |
42836227 |
tttgtaggaaaatctttggtttttatttagtgattgacacttgagtattttggagaaagatttgaaaaagagaggttagtttactaactgacatatacta |
42836128 |
T |
|
| Q |
127 |
gaactttggagagagatttggaaaagatgtcagttcatcatctttagtattggaataatatgt |
189 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||| |||| ||||| |||| ||| ||||||| |
|
|
| T |
42836127 |
gaactttagagagagatttgaaaaagatgtcagttgatcacctttattattcgaagaatatgt |
42836065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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