View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11472_high_12 (Length: 336)
Name: NF11472_high_12
Description: NF11472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11472_high_12 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 244 - 328
Target Start/End: Original strand, 26448088 - 26448172
Alignment:
| Q |
244 |
accatgaattgttacaaatttatgataaaagacttgtgcatttatcagtttgatgaagggtaaaaaatgagaaaagaaatcacac |
328 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26448088 |
accatgaattgttacaaatttatggtaaaagacttgtgcatttatcagtttgatgaagggtaaaaaatgagaaaagaaatcacac |
26448172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 113
Target Start/End: Complemental strand, 22690099 - 22689998
Alignment:
| Q |
13 |
aagtctacttgtggctaaggaagaggagcatgctaagaggaagcattttcttaatttgaaattaaacaa-aagatcaatcgtatttacggtgattggatt |
111 |
Q |
| |
|
||||||| |||||| |||||||||||||| ||||||| ||||| ||| ||| |||||||||||||| |||| |||| ||| || | |||||||||| |
|
|
| T |
22690099 |
aagtctaggtgtggcaaaggaagaggagcaggctaagaagaagcgtttactttggttgaaattaaacaagaagaccaatactatatatgctgattggatt |
22690000 |
T |
|
| Q |
112 |
ga |
113 |
Q |
| |
|
|| |
|
|
| T |
22689999 |
ga |
22689998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 19 - 113
Target Start/End: Original strand, 46865558 - 46865650
Alignment:
| Q |
19 |
acttgtggctaaggaagaggagcatgctaagaggaagcattttcttaatttgaaattaaacaaaagatcaatcgtatttacggtgattggattga |
113 |
Q |
| |
|
||||||||| |||||||||||||| ||||||| || |||||| ||| |||||||||||| |||||||||||| |||| |||||||||||||| |
|
|
| T |
46865558 |
acttgtggcaaaggaagaggagcaggctaagaagatgcatttactttggttgaaattaaac--aagatcaatcgtgtttatggtgattggattga |
46865650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 115
Target Start/End: Original strand, 46874425 - 46874457
Alignment:
| Q |
83 |
agatcaatcgtatttacggtgattggattgacg |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
46874425 |
agatcaatcgtatttacggtgattggattgacg |
46874457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 113
Target Start/End: Original strand, 46892247 - 46892277
Alignment:
| Q |
83 |
agatcaatcgtatttacggtgattggattga |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
46892247 |
agatcaatcgtatttacggtgattggattga |
46892277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 113
Target Start/End: Original strand, 46901424 - 46901526
Alignment:
| Q |
12 |
caagtctacttgtggctaaggaagaggagcatgctaagaggaagcattttcttaatttgaaattaaacaa-aagatcaatcgtatttacggtgattggat |
110 |
Q |
| |
|
|||||||||| || | ||||| |||||||| | ||||| |||||| || |||| ||||||||| ||| ||||||||| ||||||| ||||||||||| |
|
|
| T |
46901424 |
caagtctactcatgacaaaggatgaggagcaggataagaagaagcacttacttaggttgaaattaggcaagaagatcaatggtatttatggtgattggat |
46901523 |
T |
|
| Q |
111 |
tga |
113 |
Q |
| |
|
||| |
|
|
| T |
46901524 |
tga |
46901526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 232
Target Start/End: Original strand, 46865734 - 46865802
Alignment:
| Q |
164 |
tggatagggattcttctccgttgagagaattttgagaacatggtcatcggtgatagtgatcagttcata |
232 |
Q |
| |
|
|||||| ||||||| |||| || ||||||||| ||||||||||| |||||| |||||||||||||| |
|
|
| T |
46865734 |
tggataaggattctactccacagacagaattttggaaacatggtcattggtgatggtgatcagttcata |
46865802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University