View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11472_high_13 (Length: 334)
Name: NF11472_high_13
Description: NF11472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11472_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 12 - 314
Target Start/End: Original strand, 33296586 - 33296892
Alignment:
| Q |
12 |
ttggacataaaatttagagaattatattatcttttataggattctacttttatgtctcatatcattgataaaacaatttggactctaggatgagaagttc |
111 |
Q |
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| T |
33296586 |
ttggacataaaatttagagaattatattatcttttatagggttctacttttatgtctcatatcattgataaaacaatttggactctaggatgagaagttc |
33296685 |
T |
|
| Q |
112 |
atctagcaccgagagcaacaacgaactatatatcaggaccatcaagatctgaacacaacatacttataa-nnnnnnnnggaagatgtcgaatataagagt |
210 |
Q |
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| T |
33296686 |
atctagcaccgagagcaacaacgaactatatatcaggaccatcaagatccgaacacaacatacttataatttttttttggaagatgtcgaatataagagt |
33296785 |
T |
|
| Q |
211 |
ta--tctctctctgatataccatagtcgatacgagactaactattgcaattgaatttcaacaattctgcc-tagtctttgacatcactatactttcaagc |
307 |
Q |
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|| |||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||| |
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| T |
33296786 |
tatctctctctctgatataccatagtcgatgcgagactaaccattgcacttgaatttcaacaattctgccttagtctttcacatcactatactttcaagc |
33296885 |
T |
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| Q |
308 |
acactaa |
314 |
Q |
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||||||| |
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| T |
33296886 |
acactaa |
33296892 |
T |
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