View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11472_high_19 (Length: 291)
Name: NF11472_high_19
Description: NF11472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11472_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 19 - 235
Target Start/End: Original strand, 17507827 - 17508046
Alignment:
| Q |
19 |
atatatgacctgctattacacgtatatctcaatgatcctacaatttgtttgaacaatgtagggtcaactaactccttatcttcattctttacaagcttca |
118 |
Q |
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| T |
17507827 |
atatatggcctgctattacacgtatatctcaatgatcgtacaatttgtttgaacaatgtaggatcaactaactcctcatcttcattctttacaagcttca |
17507926 |
T |
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| Q |
119 |
tattcactttagctagtgtagattcaagattgcagctcat---gttgaatctcatcggaatatcaatatattatttcttctaatgcattgctaaaccttt |
215 |
Q |
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| T |
17507927 |
gattcacttcagctagtgtagattcaagattgcagctcatcaggttgaatctcttcgaaatatcaatatattatttcttctaatgcattgctaaaccttt |
17508026 |
T |
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| Q |
216 |
caaagttttagtgaattcca |
235 |
Q |
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| T |
17508027 |
caaagtcttagtgaattcca |
17508046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 19 - 168
Target Start/End: Complemental strand, 1831904 - 1831752
Alignment:
| Q |
19 |
atatatgacctgctattacacgtatatctcaatgatcctacaatttgtttgaacaatgtagggtcaactaactccttatcttcattctttacaagcttca |
118 |
Q |
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| T |
1831904 |
atatatggtctgctattacacagatatctcagagattctataatttgtttgatcaatgtagggtcaactagctcttcatcttcattctttacaagcttaa |
1831805 |
T |
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| Q |
119 |
tattcactttagctagtgtagattcaagattgcagc---tcatgttgaatctc |
168 |
Q |
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| T |
1831804 |
gattcacttcagatggtgtagatgcaggattgaagcccatcatgttgaatctc |
1831752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 110
Target Start/End: Complemental strand, 30065452 - 30065386
Alignment:
| Q |
44 |
atctcaatgatcctacaatttgtttgaacaatgtagggtcaactaactccttatcttcattctttac |
110 |
Q |
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| T |
30065452 |
atctcaaggatcctacaatttgttagaaaaatgtagaatcaaccaactcctcgtcatcattctttac |
30065386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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