View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11472_high_23 (Length: 250)
Name: NF11472_high_23
Description: NF11472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11472_high_23 |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 38214147 - 38214386
Alignment:
| Q |
1 |
aatggaataccaattgattcagcattcttgaagatccttattggggtgttgtcaaccaaaaatctgcatttagttacatgaacttgttagagtgtttgtt |
100 |
Q |
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| T |
38214147 |
aatggaataccaattgattcagcattcttgaagatccttattggggtgttgtcaaccaaaaatctgcaattagttacatgaacttgttagcgtgtttgtt |
38214246 |
T |
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| Q |
101 |
atacacacataattgagttctttatacaaacacgaacttaaatatatattacttacataatgtgttgtggcttccagatgatagagtaagtgtggaagtt |
200 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38214247 |
ataagcacataattgagttctttatacaaacacgaacttaaatatatattacttacataatgtgttgtggcttccagatgatagagtaagtgtggaagtt |
38214346 |
T |
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| Q |
201 |
cttggttgggtcgaaccagaggtagaattgttgttctctg |
240 |
Q |
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| T |
38214347 |
cttggttgggtcgaaccagaggtagaattgttgttctctg |
38214386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 38218366 - 38218605
Alignment:
| Q |
1 |
aatggaataccaattgattcagcattcttgaagatccttattggggtgttgtcaaccaaaaatctgcatttagttacatgaacttgttagagtgtttgtt |
100 |
Q |
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| T |
38218366 |
aatggaataccaattgattcagcattcttgaagatccttattggggtgttgtcaaccaaaaatctgcaattagttacatgaacttgttagcgtgtttgtt |
38218465 |
T |
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| Q |
101 |
atacacacataattgagttctttatacaaacacgaacttaaatatatattacttacataatgtgttgtggcttccagatgatagagtaagtgtggaagtt |
200 |
Q |
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| T |
38218466 |
ataagcacataattgagttctttatacaaacacgaacttaaatatatattacttacataatgtgttgtggcttccagatgatagagtaagtgtggaagtt |
38218565 |
T |
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| Q |
201 |
cttggttgggtcgaaccagaggtagaattgttgttctctg |
240 |
Q |
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| T |
38218566 |
cttggttgggtcgaaccagaggtagaattgttgttctctg |
38218605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 169 - 240
Target Start/End: Complemental strand, 42991214 - 42991143
Alignment:
| Q |
169 |
ggcttccagatgatagagtaagtgtggaagttcttggttgggtcgaaccagaggtagaattgttgttctctg |
240 |
Q |
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| T |
42991214 |
ggcttccagatgatagagtaagtgtggaagttcttggtgggatcaaaccagaggtagaattgttgttctctg |
42991143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 68
Target Start/End: Complemental strand, 42991355 - 42991291
Alignment:
| Q |
4 |
ggaataccaattgattcagcattcttgaagatccttattggggtgttgtcaaccaaaaatctgca |
68 |
Q |
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| T |
42991355 |
ggaatactaatagattcagcattcttgaagatccttattgggatgttgtcaaccaagaatctgca |
42991291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 151 - 239
Target Start/End: Complemental strand, 35017899 - 35017811
Alignment:
| Q |
151 |
acttacataatgtgttgtggcttccagatgatagagtaagtgtggaagttcttggttgggtcgaaccagaggtagaattgttgttctct |
239 |
Q |
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|||||||| |||||||| || ||||| ||||| ||||||||||||||||| | || ||||| ||||| |||||||||||||||||||| |
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| T |
35017899 |
acttacatgatgtgttggggtttccaaatgatggagtaagtgtggaagtttctagtggggtcaaaccataggtagaattgttgttctct |
35017811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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