View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11472_high_33 (Length: 206)
Name: NF11472_high_33
Description: NF11472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11472_high_33 |
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Alignment Details
Target: chr5 (Bit Score: 139; Significance: 6e-73; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 33 - 191
Target Start/End: Original strand, 6334056 - 6334214
Alignment:
| Q |
33 |
cgttcttcggacggtgaatgctgatggaaagagaatgtaaccagtggtgtgagtcccaacaatggagagaaagtcagaaggatgagacagaatcaaaaga |
132 |
Q |
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| T |
6334056 |
cgttcttcggacggtgagtgctgatggaaagagaatgtaaccagtagtgtgagtcccaacaatggagagagagtcagaaggatgagacagaatcaaaaga |
6334155 |
T |
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| Q |
133 |
aaataggaagataaaataattaaaatatatagtgtatgatgctcatgatggtgtattat |
191 |
Q |
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| T |
6334156 |
aaataggaagataaaataattaaaatatatagtgtataatgttcatgatggtgtattat |
6334214 |
T |
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Target: chr1 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 34 - 191
Target Start/End: Complemental strand, 49406029 - 49405872
Alignment:
| Q |
34 |
gttcttcggacggtgaatgctgatggaaagagaatgtaaccagtggtgtgagtcccaacaatggagagaaagtcagaaggatgagacagaatcaaaagaa |
133 |
Q |
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|||||||||| ||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
49406029 |
gttcttcggatggtgagtgctgatggaaagagaatgtaactagtggtgtgagttccaacaatggagagagagtcagaaggatgagacagaatcaaaagaa |
49405930 |
T |
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| Q |
134 |
aataggaagataaaataattaaaatatatagtgtatgatgctcatgatggtgtattat |
191 |
Q |
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| T |
49405929 |
aataggaagataaaataattaaaatatatagtgtataatattcatgatggtgtattat |
49405872 |
T |
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