View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11472_high_6 (Length: 412)
Name: NF11472_high_6
Description: NF11472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11472_high_6 |
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| [»] scaffold0018 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 396
Target Start/End: Original strand, 6169364 - 6169759
Alignment:
| Q |
1 |
aagaagaaaacataaacaaaatgaaggaaaacggtatttaggctaaccgaaacggtccgagaagaacggttcccaaataacatcaggaagagcagtggac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |
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| T |
6169364 |
aagaagaaaacataaacaaaatgaaggaaaacggtatttaggctaaccgaaacggtccgaaaagaacggttcccgaataacatcaggaagagcagtggac |
6169463 |
T |
|
| Q |
101 |
caccaaacaccctgaatactctgaccatgagaccgtccgcacagctattcctctaccggaatatatgcgaagaaatcatctgaaaacttgtcagaaagca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
6169464 |
caccaaacaccctgaatactctgaccatgagaccgtccgcacagctattcctctaccggaatatatgcgaagaaatcatctgaaaacctgtcagaaagca |
6169563 |
T |
|
| Q |
201 |
gttgtgccacctatttctcaaacagatcggcaccagagaggcgttcttaaaaaaccaacaatgcacttgtagagtggctttcaatgtcttaaaagtttaa |
300 |
Q |
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| T |
6169564 |
gttgtgccacctatttctcaaacagatcggcaccagagaggcgttcttaaaaaaccaacaatgcacttgtagagtggctttcaatgtcttaaaagtttaa |
6169663 |
T |
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| Q |
301 |
attttatcttttcaatataaaacttggcttttaattcnnnnnnnnnnnnnngcgacgtgatataaggcaatgcagcaactgcattgtgcatgtatg |
396 |
Q |
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| T |
6169664 |
attttatcttttcaatataaaacttggcttttaattctttttttagtttttgcgacgtgatataaggcaatgcagcaactgcattgtgcatgtatg |
6169759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 159 - 251
Target Start/End: Complemental strand, 8500818 - 8500727
Alignment:
| Q |
159 |
gaatatatgcgaagaaatcatctgaaaacttgtcagaaagcagttgtgccacctatttctcaaacagatcggcaccagagaggcgttcttaaa |
251 |
Q |
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| T |
8500818 |
gaatatatgcgaagaaatcacctaaaatcctgcc-gaaaacaattatgccacctgtttctcaaacggatgggcaccagagatgcgttcttaaa |
8500727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 91; Significance: 6e-44; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 32879860 - 32879616
Alignment:
| Q |
1 |
aagaagaaaacataaacaaaatgaaggaaaacggtatttaggctaaccgaaacggtccgagaagaacggttcccaaataacatcaggaagagcagtggac |
100 |
Q |
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|||||||||||| ||| |||| |||||||||| ||||||||| ||| ||||||||| || ||||||| || ||||| ||| |||||||| |||||| |
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| T |
32879860 |
aagaagaaaacaaaaattaaattaaggaaaacgatatttaggccaactgaaacggtctgaaaagaacgaaccctgaataaaatctggaagagcggtggac |
32879761 |
T |
|
| Q |
101 |
caccaaacaccctgaatactctgaccatga-------gaccgtccgcacagctattcctctaccggaatatatgcgaagaaatcatctgaaaacttgtca |
193 |
Q |
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| T |
32879760 |
caccaaacaccctgaatattgtgaccatgattagcacgaccatccgcacaactattcccctcccgtaatatatgcgaagaaatcacctgaaaacatgtca |
32879661 |
T |
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| Q |
194 |
gaaagcagttgtgccacctatttctcaaacagatcggcaccagag |
238 |
Q |
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| T |
32879660 |
gaaagcaattgtgccatcggtttttcaaacggatcggcaccagag |
32879616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 14103337 - 14103209
Alignment:
| Q |
1 |
aagaagaaaacataaacaaaatgaaggaaaacggtatttaggctaaccgaaacggtccgagaagaacggttcccaaataacatcaggaagagcagtggac |
100 |
Q |
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|||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||| || || ||||| |||| ||||||||| |||||||||||||| |
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| T |
14103337 |
aagaagaaaacataaacaaaattaaggaaaacgatatttaggccaaccgaaacggtctga-aaaaacggatcccgaataacatctagaagagcagtggac |
14103239 |
T |
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| Q |
101 |
caccaaacaccctgaatactctgaccatga |
130 |
Q |
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| T |
14103238 |
caccaaacaccctgagtactgtgaccatga |
14103209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 161 - 252
Target Start/End: Complemental strand, 14103203 - 14103112
Alignment:
| Q |
161 |
atatatgcgaagaaatcatctgaaaacttgtcagaaagcagttgtgccacctatttctcaaacagatcggcaccagagaggcgttcttaaaa |
252 |
Q |
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|||||| ||||||||||| || ||||| |||| |||| |||||||||||||| |||||||||| |||||||||||||||||| ||||||||| |
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| T |
14103203 |
atatattcgaagaaatcaccttaaaacctgtcggaaaacagttgtgccacctgtttctcaaacggatcggcaccagagaggctttcttaaaa |
14103112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 18 - 273
Target Start/End: Complemental strand, 153410 - 153148
Alignment:
| Q |
18 |
aaaatgaaggaaaacggtatttaggctaaccgaaacggtccgagaagaacggttcccaaataacatcaggaagagcagtggaccaccaa-acaccctgaa |
116 |
Q |
| |
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||||| ||| ||||| |||||||||||||||||| |||| || |||||||| ||| ||||| || |||||| ||||||| |||||| ||| |||||| |
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| T |
153410 |
aaaataaagaaaaacaatatttaggctaaccgaaatggtctgaaaagaacggctcctgaataaaatatggaagaacagtggatcaccaacacatcctgaa |
153311 |
T |
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| Q |
117 |
tactctgaccatga-------gaccgtccgcacagctattcctctaccggaatatatgcgaagaaatcatctgaaaacttgtcagaaagcagttgtgcca |
209 |
Q |
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|||| ||||||| | |||| |||||||| ||||||| || | | |||||||||||||||| || |||||||| ||| |||||||||||| || |
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| T |
153310 |
tactgtgaccattattagctagaccatccgcacaactattcccctcctgaaatatatgcgaagaaaccacctgaaaacctgttgaaaagcagttgtggca |
153211 |
T |
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| Q |
210 |
cctatttctcaaacagatcggcaccagagaggcgttcttaaaaaaccaacaatgcacttgtaga |
273 |
Q |
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||| |||||||||| ||||||||||| |||||| || || |||| ||||| ||||||| ||||| |
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| T |
153210 |
cctgtttctcaaacggatcggcaccaaagaggcattatt-aaaagccaactatgcactagtaga |
153148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 86 - 240
Target Start/End: Original strand, 41443870 - 41444031
Alignment:
| Q |
86 |
ggaagagcagtggaccaccaaacaccctgaatactctgaccatga-------gaccgtccgcacagctattcctctaccggaatatatgcgaagaaatca |
178 |
Q |
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||||||| |||||||||||||||||| ||||||| |||| |||| ||| |||||||| ||||||| || |||||||||||| |||| ||||| |
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| T |
41443870 |
ggaagagtagtggaccaccaaacaccttgaatacggtgacgatgattagctggactatccgcacaactattcccctcccggaatatatgtgaaggaatca |
41443969 |
T |
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| Q |
179 |
tctgaaaacttgtcagaaagcagttgtgccacctatttctcaaacagatcggcaccagagag |
240 |
Q |
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|||||||| |||| | ||||||||||||||||| |||||||||| |||| |||||||||| |
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| T |
41443970 |
cctgaaaacctgtcggtaagcagttgtgccacctgtttctcaaacggatcaacaccagagag |
41444031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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