View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11472_high_7 (Length: 388)
Name: NF11472_high_7
Description: NF11472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11472_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 12 - 370
Target Start/End: Complemental strand, 26872808 - 26872442
Alignment:
| Q |
12 |
atgaagggcaactacatccttttagtttcattaatgccacattagagggataaagaaaataatgaaaatagtaataacatgtaatcatggga-------c |
104 |
Q |
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| T |
26872808 |
atgaagggcaactacatccttttagtttcattaatgtcacattagagggataaagaaaataatgaaaatagtaataacatgtaatcatgggaattgggac |
26872709 |
T |
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| Q |
105 |
agaaaggactacaccaaactaccataccaaacctttgtcaaaacataaagatttggtccagtcgttttccaaagcacacaaggtgtctcaaaacttgtca |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
26872708 |
agaaaggactacaccaaactaccataccaaacctttgtcaaaacataaggatttggttcagtcgttttccaaagcacacaaggtgtctcaaaacttgtca |
26872609 |
T |
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| Q |
205 |
gatggaacaatagagcataatatataagtgtagagtgtatcaagttggagtataatccaacaccaagaacttcatcctcaacattaacactgcagctg-n |
303 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26872608 |
gatggaacaatagagcataatatatgagtgtagagtgtatcaagttggagtataatccaacaccaagaacttcatcctcaacattaacactgcagctgaa |
26872509 |
T |
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| Q |
304 |
nnnnnngaagtatggcatgcatgtggcgtaagaatgcctgcagcgggaagaaacttccgtcagacgt |
370 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
26872508 |
aaaaaagaagtatggcatgcatgtggcgtaagaatgcctgcagcgggaagaaactgccgtcagacgt |
26872442 |
T |
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