View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11472_low_11 (Length: 368)
Name: NF11472_low_11
Description: NF11472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11472_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 52850636 - 52850310
Alignment:
| Q |
1 |
caccagccattatgtttcatctcatgggatgatcacatgcttcatattttcagtgaaacatcggtcattatgtcttgcaccatatataacaaaaatatga |
100 |
Q |
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| T |
52850636 |
caccagccattatgtttcatctcatgggatgatcacatgcttcatattttcagtgaaacatcagtcattatgtcttgcaccatatataacaaaaatatga |
52850537 |
T |
|
| Q |
101 |
cacatgcaaaataaactaatttgtccggtgaaaatcaatgaacatggttgatcatgtttacaaatgtaaatgcgaattgtatttcaaaatctactcgaga |
200 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
52850536 |
cacatgcaaaataaactaacttgtccggtgaaaatcaatgaacatggttgatcatgtttacaaatgtaactgcgaattgtatttcaaaatctactcgaga |
52850437 |
T |
|
| Q |
201 |
agcagcaaatttattttacctcgaattgggtgtaacatcatgaccttctactcctgtagtttgatttccactagaaaaagtgtcctttaaaaaggacaaa |
300 |
Q |
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||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52850436 |
agcagcaaa-atattttacctcgaattgggtgtgacatcatgaccttctactcctgtagtttgatttccactagaaaaagtgtcctttaaaaaggacaaa |
52850338 |
T |
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| Q |
301 |
cgtctgagctctacatccaagtacacag |
328 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
52850337 |
cgtctgagctctacatccaagtacacag |
52850310 |
T |
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