View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11472_low_2 (Length: 513)

Name: NF11472_low_2
Description: NF11472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11472_low_2
NF11472_low_2
[»] chr6 (10 HSPs)
chr6 (352-513)||(33055601-33055754)
chr6 (352-513)||(25478338-25478491)
chr6 (352-513)||(27527203-27527356)
chr6 (354-513)||(28040664-28040815)
chr6 (352-458)||(33062984-33063090)
chr6 (344-513)||(22013924-22014083)
chr6 (352-513)||(27650961-27651113)
chr6 (355-444)||(17355375-17355464)
chr6 (353-446)||(15970565-15970657)
chr6 (469-509)||(6952290-6952330)
[»] chr3 (6 HSPs)
chr3 (352-513)||(19434968-19435121)
chr3 (344-513)||(28103769-28103930)
chr3 (344-513)||(28068957-28069116)
chr3 (344-458)||(28058577-28058691)
chr3 (352-513)||(6911407-6911564)
chr3 (391-513)||(11200699-11200813)
[»] chr1 (7 HSPs)
chr1 (352-513)||(16100706-16100859)
chr1 (352-513)||(47050594-47050747)
chr1 (352-513)||(14660026-14660179)
chr1 (344-513)||(17653475-17653634)
chr1 (352-513)||(14650235-14650388)
chr1 (352-513)||(29289159-29289312)
chr1 (352-513)||(19657495-19657649)
[»] chr4 (6 HSPs)
chr4 (352-513)||(4763571-4763727)
chr4 (344-513)||(27561217-27561397)
chr4 (352-444)||(11512948-11513039)
chr4 (354-444)||(5358734-5358824)
chr4 (253-299)||(40383358-40383404)
chr4 (405-446)||(54352037-54352078)
[»] chr5 (4 HSPs)
chr5 (344-513)||(5519553-5519712)
chr5 (354-458)||(42785455-42785559)
chr5 (352-513)||(15598659-15598811)
chr5 (469-513)||(27198387-27198431)
[»] chr2 (6 HSPs)
chr2 (344-513)||(44324032-44324191)
chr2 (353-434)||(2588117-2588198)
chr2 (405-513)||(45332676-45332776)
chr2 (344-443)||(808810-808909)
chr2 (352-409)||(45331962-45332019)
chr2 (355-458)||(31713836-31713938)
[»] chr8 (6 HSPs)
chr8 (354-458)||(4706773-4706877)
chr8 (352-513)||(18982382-18982534)
chr8 (356-458)||(26917464-26917567)
chr8 (344-434)||(15924891-15924982)
chr8 (469-513)||(26340558-26340602)
chr8 (470-513)||(28603191-28603234)
[»] scaffold0406 (1 HSPs)
scaffold0406 (352-458)||(3615-3721)
[»] scaffold0438 (2 HSPs)
scaffold0438 (354-513)||(7734-7884)
scaffold0438 (469-513)||(10719-10763)
[»] scaffold0007 (1 HSPs)
scaffold0007 (352-446)||(60505-60599)
[»] chr7 (2 HSPs)
chr7 (344-443)||(28803513-28803613)
chr7 (470-513)||(36264322-36264365)


Alignment Details
Target: chr6 (Bit Score: 93; Significance: 5e-45; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 352 - 513
Target Start/End: Original strand, 33055601 - 33055754
Alignment:
Q  352 gatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttga 451  Q
    ||||||||||||| ||||| |||| || |||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||    
T  33055601 gatttttatattctatttggatttgattatctcgattccttttcattataatcgatttatatattttctttaaagttgtggatttggtttcacctcttga 33055700  T
Q  452 caacattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagtttt 513  Q
    |||        |||||||||||||||||| | ||||||||||||||||| ||||||||||||    
T  33055701 caa--------cattgaaattttgatatagtcttatttggtttgataaaattacaaagtttt 33055754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 352 - 513
Target Start/End: Complemental strand, 25478491 - 25478338
Alignment:
Q  352 gatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttga 451  Q
    ||||||||||||| ||||| |||| || |||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||    
T  25478491 gatttttatattctatttggatttgattatctcgattccttttcattataatcgatttatatattttctttaaagttgtggatttggtttcacctcttga 25478392  T
Q  452 caacattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagtttt 513  Q
    |        | |||||||||||||||||| | ||||||||||||||||| |||| |||||||    
T  25478391 c--------gacattgaaattttgatatagtcttatttggtttgataaaattacgaagtttt 25478338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 352 - 513
Target Start/End: Original strand, 27527203 - 27527356
Alignment:
Q  352 gatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttga 451  Q
    ||||||||||||| ||||| |||| || |||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||    
T  27527203 gatttttatattctatttggatttgattatctcgattccttttcattataatcgatttatatattttctttaaagttgtggatttggtttcacctcttga 27527302  T
Q  452 caacattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagtttt 513  Q
    |        | |||||||||||||||||| | ||||||||||||||||| ||| ||||||||    
T  27527303 c--------gacattgaaattttgatatagtcttatttggtttgataaaattagaaagtttt 27527356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 354 - 513
Target Start/End: Original strand, 28040664 - 28040815
Alignment:
Q  354 tttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttgaca 453  Q
    ||||||||||  ||||| |||| || |||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||     
T  28040664 tttttatattatatttggatttgattatctcgattccttttcattataatcgatttatatattttctttaaagttgtggatttggtttcacctcttgac- 28040762  T
Q  454 acattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagtttt 513  Q
           | |||||||||||||||||| | |||||| |||||||||| ||||||||||||    
T  28040763 -------gacattgaaattttgatatagtcttatttagtttgataaaattacaaagtttt 28040815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 352 - 458
Target Start/End: Original strand, 33062984 - 33063090
Alignment:
Q  352 gatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttga 451  Q
    ||||||||||||| ||||| |||| || |||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||    
T  33062984 gatttttatattctatttggatttgattatctcgattccttttcattataatcgatttatatattttctttaaagttgtggatttggtttcacctcttga 33063083  T
Q  452 caacatt 458  Q
    | |||||    
T  33063084 cgacatt 33063090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 344 - 513
Target Start/End: Original strand, 22013924 - 22014083
Alignment:
Q  344 ttaagtctgatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttca 443  Q
    ||||||| || |||||||||| ||||| |||| || ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| || |||||    
T  22013924 ttaagtccgacttttatattctatttggatttgattatctcgatttcttttcattataatcgatttctatattttctttaaagttgtggatttgatttca 22014023  T
Q  444 cctcttgacaacattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagtttt 513  Q
    |||||||||        | |||||||||| ||  ||| | ||||||||||||||||||||||||||||||    
T  22014024 cctcttgac--------gacattgaaattctg--atagtcttatttggtttgataaatttacaaagtttt 22014083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 352 - 513
Target Start/End: Original strand, 27650961 - 27651113
Alignment:
Q  352 gatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttga 451  Q
    |||| ||||| || ||||| |||| || || | |||||||||||||||||   ||||||||||||  |||||||||||| ||| ||| ||||||||||      
T  27650961 gattgttatagtctatttggatttgattatttggattccttttcattatacatgatttctatatttcctttaaagttgttgatttggattcacctcttac 27651060  T
Q  452 caacattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagtttt 513  Q
     ||         ||||| ||||||||||| ||||||||| ||||||||||||||||| ||||    
T  27651061 gaa---------attgatattttgatatagtattatttgatttgataaatttacaaaatttt 27651113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 355 - 444
Target Start/End: Original strand, 17355375 - 17355464
Alignment:
Q  355 ttttatattcaatttgaatttaatcatctcgattcctttt-cattataatcgatttctatattatctttaaagttgtggatctggtttcac 444  Q
    |||||||||| ||||| |||| || || |||||||||||| |||||||  ||||| ||||||| ||||||||||||||||| ||| |||||    
T  17355375 ttttatattctatttggatttgattatttcgattcctttttcattatacgcgatt-ctatattttctttaaagttgtggatttgggttcac 17355464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 446
Target Start/End: Complemental strand, 15970657 - 15970565
Alignment:
Q  353 atttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacct 446  Q
    |||||||||||| ||||| |||| || || ||||| ||||||||||||    |||||||||||| |  |||||||||||||| ||| |||||||    
T  15970657 atttttatattcgatttggatttgattatttcgat-ccttttcattatggatgatttctatattctaattaaagttgtggatttgggttcacct 15970565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 469 - 509
Target Start/End: Original strand, 6952290 - 6952330
Alignment:
Q  469 aattttgatataatattatttggtttgataaatttacaaag 509  Q
    |||||||||||| | ||||||||||||||||||| ||||||    
T  6952290 aattttgatatagtcttatttggtttgataaattcacaaag 6952330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 89; Significance: 1e-42; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 352 - 513
Target Start/End: Original strand, 19434968 - 19435121
Alignment:
Q  352 gatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttga 451  Q
    ||||||||||||| ||||| |||| || |||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||    
T  19434968 gatttttatattctatttggatttgattatctcgattccttttcattataatcgatttatatattttctttaaagttgtggatttggtttcacctcttga 19435067  T
Q  452 caacattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagtttt 513  Q
    |        | |||||||||||||||||| | ||||||||||||||||| ||||||||||||    
T  19435068 c--------gacattgaaattttgatatagtcttatttggtttgataaaattacaaagtttt 19435121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 344 - 513
Target Start/End: Original strand, 28103769 - 28103930
Alignment:
Q  344 ttaagtctgatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttca 443  Q
    ||||| ||||||||||||||| ||||| |||| || ||||||||||||||||||||||||| |||| |||||| ||||||||||||||||| ||||||||    
T  28103769 ttaagcctgatttttatattctatttggatttgattatctcgattccttttcattataatcaatttatatattttctttaaagttgtggatttggtttca 28103868  T
Q  444 cctcttgacaacattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagtttt 513  Q
    |||||||||        | |||||| ||||||||||| | ||||||||||||||||| ||||||||||||    
T  28103869 cctcttgac--------gacattgagattttgatatagtcttatttggtttgataaaattacaaagtttt 28103930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 344 - 513
Target Start/End: Complemental strand, 28069116 - 28068957
Alignment:
Q  344 ttaagtctgatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttca 443  Q
    ||||||| ||||||||||||| ||||| |||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||    
T  28069116 ttaagtccgatttttatattctatttggatttgattatctcgattccttttcattataatcgatttctatattttctttaaagttgtggatttgatttca 28069017  T
Q  444 cctcttgacaacattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagtttt 513  Q
    | |||||||        | |||||||||||||  ||| | ||||||||||||||| ||||||||||||||    
T  28069016 cttcttgac--------gacattgaaattttg--atagtcttatttggtttgatagatttacaaagtttt 28068957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 344 - 458
Target Start/End: Complemental strand, 28058691 - 28058577
Alignment:
Q  344 ttaagtctgatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttca 443  Q
    ||||||| ||||||||||||| ||||| |||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||    
T  28058691 ttaagtccgatttttatattctatttggatttgattatctcgattccttttcattataatcgatttctatattttctttaaagttgtggatttgatttca 28058592  T
Q  444 cctcttgacaacatt 458  Q
    | ||||||| |||||    
T  28058591 cttcttgacgacatt 28058577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 352 - 513
Target Start/End: Complemental strand, 6911564 - 6911407
Alignment:
Q  352 gatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctgg-tttcacctcttg 450  Q
    ||||||||||||| ||||| | || || |||||||||| ||||||||||||||||||| |||||| ||||||||||||||||| ||| ||||||||||||    
T  6911564 gatttttatattctatttggacttgattatctcgattctttttcattataatcgatttatatattttctttaaagttgtggatttggttttcacctcttg 6911465  T
Q  451 acaacattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagtttt 513  Q
    || ||     | |||||||||| |||||||   ||||||||||||||||| |||| |||||||    
T  6911464 acgac-----gacattgaaattctgatatagccttatttggtttgataaaattaccaagtttt 6911407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 391 - 513
Target Start/End: Original strand, 11200699 - 11200813
Alignment:
Q  391 ttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttgacaacattttgtcattgaaattttgatataatattatttg 490  Q
    ||||||||||| ||||||| ||||||  ||||| |||| | ||| |||||||||||||| || |||||        | |||||||||||| | |||||||    
T  11200699 ttttcattatactcgatttatatatttcctttatagttattgatttggtttcacctctttacgacatt--------ggaattttgatatagttttatttg 11200790  T
Q  491 gtttgataaatttacaaagtttt 513  Q
    |||||||||||||||||||||||    
T  11200791 gtttgataaatttacaaagtttt 11200813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 89; Significance: 1e-42; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 352 - 513
Target Start/End: Original strand, 16100706 - 16100859
Alignment:
Q  352 gatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttga 451  Q
    ||||||||||||| ||||| |||| || |||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||    
T  16100706 gatttttatattctatttggatttgattatctcgattccttttcattataatcgatttatatattttctttaaagttgtggatttggtttcacctcttga 16100805  T
Q  452 caacattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagtttt 513  Q
    |        | |||||||||||||||||| | ||||||||||||||||| ||||||||||||    
T  16100806 c--------gacattgaaattttgatatagtcttatttggtttgataaaattacaaagtttt 16100859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 352 - 513
Target Start/End: Complemental strand, 47050747 - 47050594
Alignment:
Q  352 gatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttga 451  Q
    ||||||||||||| ||||| |||| || |||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||    
T  47050747 gatttttatattctatttggatttgattatctcgattccttttcattataatcgatttatatattttctttaaagttgtggatttggtttcacctcttga 47050648  T
Q  452 caacattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagtttt 513  Q
    |        | |||||||||||||||||| | ||||||||||||||||| ||||||||||||    
T  47050647 c--------gacattgaaattttgatatagtcttatttggtttgataaaattacaaagtttt 47050594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 352 - 513
Target Start/End: Original strand, 14660026 - 14660179
Alignment:
Q  352 gatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttga 451  Q
    ||||||||||||| ||||| |||| || |||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||| ||||||    
T  14660026 gatttttatattctatttggatttgattatctcgattccttttcattataatcgatttatatattttctttaaagttgtggatttggtttcacttcttga 14660125  T
Q  452 caacattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagtttt 513  Q
    |        | |||||||||||||||||| | ||||||||||||||||| ||| ||||||||    
T  14660126 c--------gacattgaaattttgatatagtcttatttggtttgataaaattagaaagtttt 14660179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 344 - 513
Target Start/End: Complemental strand, 17653634 - 17653475
Alignment:
Q  344 ttaagtctgatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttca 443  Q
    ||||||| || |||||||||| ||||| |||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||    
T  17653634 ttaagtccgacttttatattctatttggatttgattatctcgattccttttcattataatcgatttctatattttctttaaagttgtggatttgatttca 17653535  T
Q  444 cctcttgacaacattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagtttt 513  Q
    |||||||||        | |||||||||| ||  ||| | ||||||||||||||||||||||||||||||    
T  17653534 cctcttgac--------gacattgaaattctg--atagtcttatttggtttgataaatttacaaagtttt 17653475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 352 - 513
Target Start/End: Original strand, 14650235 - 14650388
Alignment:
Q  352 gatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttga 451  Q
    ||||||||||||| ||||| |||| |  |||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||| ||||||    
T  14650235 gatttttatattctatttggatttgactatctcgattccttttcattataatcgatttatatattttctttaaagttgtggatttggtttcacttcttga 14650334  T
Q  452 caacattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagtttt 513  Q
    |        | |||||||||||||||||| | ||||||||||||||||| ||| ||||||||    
T  14650335 c--------gacattgaaattttgatatagtcttatttggtttgataaaattaaaaagtttt 14650388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 352 - 513
Target Start/End: Complemental strand, 29289312 - 29289159
Alignment:
Q  352 gatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttga 451  Q
    |||| |||||||| ||||| |||| || ||||||||||||||||||||||||| |||| |||||| ||||||||||||||||| ||||||||||||||||    
T  29289312 gattgttatattctatttggatttgattatctcgattccttttcattataatcaatttatatattttctttaaagttgtggatttggtttcacctcttga 29289213  T
Q  452 caacattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagtttt 513  Q
    |        | ||||||||||||| |||| | ||||||||||||||||| ||||||||||||    
T  29289212 c--------gacattgaaattttgttatagtcttatttggtttgataaaattacaaagtttt 29289159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 352 - 513
Target Start/End: Complemental strand, 19657649 - 19657495
Alignment:
Q  352 gatttttatattcaatttgaattta-atcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttg 450  Q
    ||||||||||||| ||||| ||||  || || || |||||||||||||||    |||||||||||| ||||||| |||| |||| ||| || |||||||     
T  19657649 gatttttatattctatttggatttctattatttcaattccttttcattatgtgtgatttctatattttctttaaggttgcggatttgggttgacctcttt 19657550  T
Q  451 acaacattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagtttt 513  Q
    ||||||||  |        |||| |||||||| ||||||||||||||||||||||||||||||    
T  19657549 acaacattggg--------atttcgatataatcttatttggtttgataaatttacaaagtttt 19657495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 2e-38; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 352 - 513
Target Start/End: Complemental strand, 4763727 - 4763571
Alignment:
Q  352 gatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttga 451  Q
    ||||||||||||| ||||| |||| || |||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||    
T  4763727 gatttttatattctatttggatttgattatctcgattccttttcattataatcgatttatatattttctttaaagttgtggatttggtttcacctcttga 4763628  T
Q  452 caacattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagtttt 513  Q
    | ||     | |||||||||| |||||||   ||||||||||||||||| |||| |||||||    
T  4763627 cgac-----gacattgaaattctgatatagccttatttggtttgataaaattaccaagtttt 4763571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 344 - 513
Target Start/End: Complemental strand, 27561397 - 27561217
Alignment:
Q  344 ttaagtctgatttttatattcaatttgaatttaatcatctcgattccttttcattataatcg-------------------atttctatattatctttaa 424  Q
    ||||||| || |||||||||| ||||| |||| || ||||||||||||||||||||||||||                   |||| |||||| |||||||    
T  27561397 ttaagtccgacttttatattctatttggatttgattatctcgattccttttcattataatcgatttatatattttctatagatttatatattttctttaa 27561298  T
Q  425 agttgtggatctggtttcacctcttgacaacattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagtttt 513  Q
    |||||||||| |||||||||||||||||        | |||||||||||||||||| | ||||||||||||||||| ||||||||||||    
T  27561297 agttgtggatttggtttcacctcttgac--------gacattgaaattttgatatagtcttatttggtttgataaaattacaaagtttt 27561217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 352 - 444
Target Start/End: Complemental strand, 11513039 - 11512948
Alignment:
Q  352 gatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcac 444  Q
    ||||||||||||| ||||| |||| || || ||||||||||||||||||    ||||| | |||| ||||||||||||||||| ||| |||||    
T  11513039 gatttttatattctatttggatttgattatttcgattccttttcattatgcatgattt-tttattttctttaaagttgtggatttgggttcac 11512948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 354 - 444
Target Start/End: Complemental strand, 5358824 - 5358734
Alignment:
Q  354 tttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcac 444  Q
    ||||||||||| ||||| |||| || || |  ||||||| |||||||| || |||||||||||  ||||||||| || ||| |||||||||    
T  5358824 tttttatattctatttggatttgattattttcattccttctcattatactctatttctatatttgctttaaagtggtagatttggtttcac 5358734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 253 - 299
Target Start/End: Original strand, 40383358 - 40383404
Alignment:
Q  253 aacatgacagatattttgcaacatgagatattaaatttggctttcaa 299  Q
    ||||||| ||||||||| ||| |||||||||| ||||||||||||||    
T  40383358 aacatgagagatatttttcaatatgagatatttaatttggctttcaa 40383404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 446
Target Start/End: Complemental strand, 54352078 - 54352037
Alignment:
Q  405 gatttctatattatctttaaagttgtggatctggtttcacct 446  Q
    |||||||||| |||||||||| |||||||| |||||||||||    
T  54352078 gatttctatactatctttaaaattgtggatttggtttcacct 54352037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 4e-36; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 344 - 513
Target Start/End: Complemental strand, 5519712 - 5519553
Alignment:
Q  344 ttaagtctgatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttca 443  Q
    ||||||| ||||||||||||| ||||| |||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||    
T  5519712 ttaagtccgatttttatattctatttggatttgattatctcgattccttttcattataatcgatttctatattttctttaaagttgtggatttgatttca 5519613  T
Q  444 cctcttgacaacattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagtttt 513  Q
    ||||||||         | |||||||||| ||  ||| | ||||||||||||||||||||||||||||||    
T  5519612 cctcttga--------agacattgaaattctg--atagtcttatttggtttgataaatttacaaagtttt 5519553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 354 - 458
Target Start/End: Original strand, 42785455 - 42785559
Alignment:
Q  354 tttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttgaca 453  Q
    ||||||||||  ||||| |||| || |||||||||| |||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||     
T  42785455 tttttatattttatttggatttgattatctcgattcattttcattataatcgatttctatattttctttaaagttgtggatttgatttcacctcttgacg 42785554  T
Q  454 acatt 458  Q
    |||||    
T  42785555 acatt 42785559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 352 - 513
Target Start/End: Original strand, 15598659 - 15598811
Alignment:
Q  352 gatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttga 451  Q
    ||||||||||||| ||||| |||| || || ||||||||||| |||||||  ||||||||||||| ||||||||||||||||| ||| |||||||||| |    
T  15598659 gatttttatattctatttggatttgattatttcgattccttt-cattatacgcgatttctatattttctttaaagttgtggatttggattcacctcttta 15598757  T
Q  452 caacattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagtttt 513  Q
    |        | |||||| ||||||||||| | |||||| |||||||||||||| || |||||    
T  15598758 c--------gacattgagattttgatatagtcttatttcgtttgataaatttaaaaggtttt 15598811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 469 - 513
Target Start/End: Complemental strand, 27198431 - 27198387
Alignment:
Q  469 aattttgatataatattatttggtttgataaatttacaaagtttt 513  Q
    |||||||||||| |  |||||||||| ||||||||||||||||||    
T  27198431 aattttgatatagtcatatttggtttaataaatttacaaagtttt 27198387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 1e-33; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 344 - 513
Target Start/End: Original strand, 44324032 - 44324191
Alignment:
Q  344 ttaagtctgatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttca 443  Q
    ||||||| || |||||||||| ||||| |||| || ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| || |||||    
T  44324032 ttaagtccgacttttatattctatttggatttgattatctcgatttcttttcattataatcgatttctatattttctttaaagttgtggatttgatttca 44324131  T
Q  444 cctcttgacaacattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagtttt 513  Q
    |||||||||        | |||||||||| ||  ||| | ||||||||||||||||||||||||||||||    
T  44324132 cctcttgac--------gacattgaaattctg--atagtcttatttggtttgataaatttacaaagtttt 44324191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 353 - 434
Target Start/End: Original strand, 2588117 - 2588198
Alignment:
Q  353 atttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggat 434  Q
    |||||||||||| ||||| |||| || |||| ||||||||||||||||||||||||| |||||| |||||||||||||||||    
T  2588117 atttttatattctatttggatttgattatcttgattccttttcattataatcgatttatatattttctttaaagttgtggat 2588198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 405 - 513
Target Start/End: Original strand, 45332676 - 45332776
Alignment:
Q  405 gatttctatattatctttaaagttgtggatctggtttcacctcttgacaacattttgtcattgaaattttgatataatattatttggtttgataaattta 504  Q
    ||||| |||||| ||||||||||||||||| ||||||||||||||||| |||||        |||||||||||||| | ||||||||||||||||| |||    
T  45332676 gatttatatattttctttaaagttgtggatttggtttcacctcttgacgacatt--------gaaattttgatatagtcttatttggtttgataaaatta 45332767  T
Q  505 caaagtttt 513  Q
    |||||||||    
T  45332768 caaagtttt 45332776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 344 - 443
Target Start/End: Complemental strand, 808909 - 808810
Alignment:
Q  344 ttaagtctgatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttca 443  Q
    ||||||| || |||||||||| ||||| |||| || |||||||||| |||||||||||  || |||||||||| |||||||| |||||||| ||| ||||    
T  808909 ttaagtccgacttttatattctatttggatttgattatctcgattctttttcattatacgcggtttctatattttctttaaaattgtggatttgggttca 808810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 352 - 409
Target Start/End: Original strand, 45331962 - 45332019
Alignment:
Q  352 gatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgattt 409  Q
    ||||||||||||| ||||| |||| || ||||||||||||||||||||||||||||||    
T  45331962 gatttttatattctatttggatttgattatctcgattccttttcattataatcgattt 45332019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 355 - 458
Target Start/End: Original strand, 31713836 - 31713938
Alignment:
Q  355 ttttatattcaatttgaatttaatcatctcgattcc-ttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttgaca 453  Q
    |||||||||| ||||| |||| || || |||||||| |||||||||||  ||| ||||||||| ||||| ||||||||||| ||| ||||| || | |||    
T  31713836 ttttatattctatttggatttgattatttcgattcctttttcattatacgcga-ttctatattttcttt-aagttgtggatttgggttcacttccttaca 31713933  T
Q  454 acatt 458  Q
    |||||    
T  31713934 acatt 31713938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 4e-33; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 354 - 458
Target Start/End: Complemental strand, 4706877 - 4706773
Alignment:
Q  354 tttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttgaca 453  Q
    ||||||||||  ||||| |||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||    
T  4706877 tttttatattttatttggatttgattatctcgattccttttcattataatcgatttctatattttctttaaagttgtggatttgatttcacctcttgaca 4706778  T
Q  454 acatt 458  Q
    |||||    
T  4706777 acatt 4706773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 352 - 513
Target Start/End: Original strand, 18982382 - 18982534
Alignment:
Q  352 gatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttga 451  Q
    ||||||||||||| ||| || ||| || |||||||||||||||||||||||||||||| |||||| |||||||||||||||||  |||||||||||||||    
T  18982382 gatttttatattctattgga-tttgattatctcgattccttttcattataatcgatttatatattttctttaaagttgtggattgggtttcacctcttga 18982480  T
Q  452 caacattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagtttt 513  Q
    |        | |||||||||||||| ||| | ||||||||||||||||| ||||||||||||    
T  18982481 c--------gacattgaaattttgacatagtcttatttggtttgataaaattacaaagtttt 18982534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 356 - 458
Target Start/End: Complemental strand, 26917567 - 26917464
Alignment:
Q  356 tttatattcaatttgaatttaatcatctcgattcctttt-cattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttgacaa 454  Q
    ||||||||| ||||| |||| || || |||||||||||| |||||||  ||||||||||||| ||||||||||||||||| ||| ||||| |||| || |    
T  26917567 tttatattctatttggatttgattatttcgattcctttttcattatacgcgatttctatattttctttaaagttgtggatttgggttcacttctttacga 26917468  T
Q  455 catt 458  Q
    ||||    
T  26917467 catt 26917464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 344 - 434
Target Start/End: Original strand, 15924891 - 15924982
Alignment:
Q  344 ttaagtctgatttttatattcaatttgaatttaatcatctcgattcctttt-cattataatcgatttctatattatctttaaagttgtggat 434  Q
    ||||||| |||||||| |||| ||||| |||| || || |||||||||||| || ||||  ||||||||||||| |||||||| ||||||||    
T  15924891 ttaagtccgatttttacattctatttggatttgattatttcgattcctttttcactatatgcgatttctatattttctttaaaattgtggat 15924982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 469 - 513
Target Start/End: Complemental strand, 26340602 - 26340558
Alignment:
Q  469 aattttgatataatattatttggtttgataaatttacaaagtttt 513  Q
    |||||||||||| | ||||||| ||||||||||||||||||||||    
T  26340602 aattttgatatattcttatttgatttgataaatttacaaagtttt 26340558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 470 - 513
Target Start/End: Complemental strand, 28603234 - 28603191
Alignment:
Q  470 attttgatataatattatttggtttgataaatttacaaagtttt 513  Q
    ||||||||||| | ||||||||||||||||| ||||||||||||    
T  28603234 attttgatatacttttatttggtttgataaagttacaaagtttt 28603191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406 (Bit Score: 71; Significance: 6e-32; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 352 - 458
Target Start/End: Original strand, 3615 - 3721
Alignment:
Q  352 gatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttga 451  Q
    ||||||||||||| || ||||||| || |||||||||||||||||||||||||||||| |||||| ||||||||||||||||| | ||||||||||||||    
T  3615 gatttttatattctatgtgaatttgattatctcgattccttttcattataatcgatttatatattttctttaaagttgtggatttagtttcacctcttga 3714  T
Q  452 caacatt 458  Q
    | |||||    
T  3715 cgacatt 3721  T

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Target: scaffold0438 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 354 - 513
Target Start/End: Complemental strand, 7884 - 7734
Alignment:
Q  354 tttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttgaca 453  Q
    |||| |||||| ||||| |||| || || ||||||| ||||||| |||  |  |||||||||| ||||||||||||| ||| ||| ||||||||||  ||    
T  7884 ttttcatattctatttggatttgattatttcgattcattttcatcatacccagtttctatattttctttaaagttgttgatttggattcacctcttacca 7785  T
Q  454 acattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagtttt 513  Q
             ||||| |||||||||||| | ||||||| ||||||||||||||||||||||    
T  7784 ---------cattggaattttgatatattcttatttgatttgataaatttacaaagtttt 7734  T

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Target: scaffold0438; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 469 - 513
Target Start/End: Complemental strand, 10763 - 10719
Alignment:
Q  469 aattttgatataatattatttggtttgataaatttacaaagtttt 513  Q
    |||||||||||| | ||||||| ||||||||||||||||||||||    
T  10763 aattttgatatattcttatttgatttgataaatttacaaagtttt 10719  T

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Target: scaffold0007 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 352 - 446
Target Start/End: Original strand, 60505 - 60599
Alignment:
Q  352 gatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacct 446  Q
    |||| |||||||| ||||| |||| || || ||||||||||||||||||  | |||||| ||||| |||||||||||| |||| ||| |||||||    
T  60505 gattgttatattctatttggatttgattatttcgattccttttcattatgcttgatttcgatattttctttaaagttgcggatttggattcacct 60599  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 344 - 443
Target Start/End: Original strand, 28803513 - 28803613
Alignment:
Q  344 ttaagtctgatttttatattcaatttgaatttaatcatctcgattcctttt-cattataatcgatttctatattatctttaaagttgtggatctggtttc 442  Q
    |||||||  ||||||||| || ||||| |||| || || |||||||||||| |||||||  ||||||||||||| |||||||| |||||||| ||| |||    
T  28803513 ttaagtccaatttttatactctatttggatttgattatttcgattcctttttcattatatgcgatttctatattctctttaaaattgtggatttgggttc 28803612  T
Q  443 a 443  Q
    |    
T  28803613 a 28803613  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 470 - 513
Target Start/End: Complemental strand, 36264365 - 36264322
Alignment:
Q  470 attttgatataatattatttggtttgataaatttacaaagtttt 513  Q
    |||| |||||||| ||||||||||||||||||||| ||||||||    
T  36264365 atttcgatataatcttatttggtttgataaatttataaagtttt 36264322  T

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