View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11472_low_23 (Length: 285)

Name: NF11472_low_23
Description: NF11472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11472_low_23
NF11472_low_23
[»] chr3 (12 HSPs)
chr3 (18-210)||(7948978-7949159)
chr3 (176-243)||(41319316-41319383)
chr3 (166-266)||(11093533-11093633)
chr3 (187-223)||(14338500-14338536)
chr3 (176-271)||(24205047-24205142)
chr3 (187-228)||(12704674-12704715)
chr3 (187-231)||(15864243-15864287)
chr3 (177-215)||(25908846-25908884)
chr3 (163-229)||(49651779-49651845)
chr3 (170-215)||(7928464-7928509)
chr3 (163-215)||(25948880-25948932)
chr3 (167-215)||(39002046-39002094)
[»] chr7 (24 HSPs)
chr7 (187-270)||(1885532-1885615)
chr7 (187-246)||(5937438-5937497)
chr7 (187-236)||(44317303-44317352)
chr7 (187-237)||(2144556-2144604)
chr7 (167-242)||(10702541-10702615)
chr7 (187-238)||(35238201-35238252)
chr7 (175-248)||(38134411-38134484)
chr7 (176-215)||(19930947-19930986)
chr7 (164-215)||(32308134-32308185)
chr7 (177-244)||(42720897-42720964)
chr7 (165-223)||(9050128-9050186)
chr7 (109-215)||(24339656-24339757)
chr7 (164-270)||(26329376-26329482)
chr7 (177-215)||(35861978-35862016)
chr7 (187-244)||(36013815-36013873)
chr7 (174-215)||(41360924-41360965)
chr7 (188-229)||(44020975-44021016)
chr7 (187-219)||(2143870-2143902)
chr7 (197-229)||(3528089-3528121)
chr7 (175-215)||(4008569-4008609)
chr7 (175-215)||(4013961-4014001)
chr7 (187-215)||(7241011-7241039)
chr7 (118-170)||(21138955-21139007)
chr7 (187-223)||(37820086-37820122)
[»] chr6 (20 HSPs)
chr6 (187-264)||(1334626-1334703)
chr6 (165-241)||(19369805-19369881)
chr6 (187-236)||(10031563-10031612)
chr6 (189-271)||(5579612-5579694)
chr6 (187-223)||(6751899-6751935)
chr6 (163-215)||(9024169-9024221)
chr6 (187-223)||(29959181-29959217)
chr6 (159-229)||(785444-785515)
chr6 (170-221)||(7377987-7378038)
chr6 (187-267)||(26402697-26402779)
chr6 (169-215)||(9617448-9617494)
chr6 (164-242)||(13815429-13815507)
chr6 (174-264)||(30866148-30866238)
chr6 (150-215)||(9629397-9629457)
chr6 (178-215)||(17168908-17168945)
chr6 (170-215)||(33001289-33001334)
chr6 (187-244)||(34446550-34446607)
chr6 (167-215)||(9195751-9195799)
chr6 (159-215)||(16766711-16766767)
chr6 (186-230)||(28715294-28715338)
[»] chr5 (15 HSPs)
chr5 (187-255)||(21319962-21320030)
chr5 (163-242)||(38749556-38749635)
chr5 (187-246)||(19167593-19167653)
chr5 (187-229)||(30080518-30080560)
chr5 (187-271)||(26205777-26205861)
chr5 (163-215)||(41558647-41558699)
chr5 (187-222)||(10010561-10010596)
chr5 (159-209)||(18592093-18592143)
chr5 (174-238)||(38866444-38866510)
chr5 (188-266)||(41558701-41558779)
chr5 (166-267)||(13287395-13287496)
chr5 (177-218)||(25630106-25630147)
chr5 (187-236)||(38784799-38784848)
chr5 (192-228)||(18106654-18106690)
chr5 (163-215)||(31084337-31084389)
[»] chr8 (14 HSPs)
chr8 (187-246)||(26915257-26915316)
chr8 (109-271)||(44067474-44067631)
chr8 (187-229)||(34073995-34074037)
chr8 (180-237)||(34201056-34201113)
chr8 (187-255)||(42874496-42874564)
chr8 (187-228)||(27733848-27733889)
chr8 (166-242)||(5307048-5307123)
chr8 (187-223)||(6960693-6960729)
chr8 (187-243)||(14943114-14943170)
chr8 (159-215)||(22651990-22652046)
chr8 (183-234)||(25104608-25104657)
chr8 (87-159)||(28819256-28819328)
chr8 (187-219)||(31119097-31119129)
chr8 (175-215)||(31236582-31236622)
[»] chr4 (13 HSPs)
chr4 (190-255)||(10634964-10635029)
chr4 (188-233)||(28663488-28663533)
chr4 (187-243)||(34589723-34589779)
chr4 (186-223)||(49887762-49887799)
chr4 (187-223)||(13307883-13307919)
chr4 (187-243)||(37496690-37496746)
chr4 (176-271)||(24343465-24343560)
chr4 (187-230)||(44362665-44362708)
chr4 (163-229)||(18513234-18513300)
chr4 (176-254)||(19230315-19230393)
chr4 (187-220)||(10164871-10164904)
chr4 (163-215)||(12895109-12895161)
chr4 (175-243)||(56049863-56049930)
[»] chr2 (12 HSPs)
chr2 (187-271)||(43586022-43586106)
chr2 (164-215)||(12668417-12668468)
chr2 (187-242)||(13501095-13501150)
chr2 (175-242)||(37491860-37491927)
chr2 (193-243)||(39399898-39399948)
chr2 (169-231)||(45000845-45000906)
chr2 (188-229)||(30563409-30563450)
chr2 (167-215)||(15528366-15528414)
chr2 (166-210)||(28341865-28341909)
chr2 (187-271)||(37497078-37497162)
chr2 (185-229)||(40681982-40682026)
chr2 (187-223)||(42665614-42665650)
[»] scaffold0122 (1 HSPs)
scaffold0122 (192-240)||(10319-10367)
[»] scaffold0007 (1 HSPs)
scaffold0007 (176-271)||(225274-225369)
[»] chr1 (13 HSPs)
chr1 (187-229)||(24462287-24462329)
chr1 (163-215)||(1486702-1486754)
chr1 (177-229)||(40747780-40747832)
chr1 (87-138)||(38078594-38078645)
chr1 (177-215)||(30847727-30847765)
chr1 (166-215)||(6427364-6427413)
chr1 (187-267)||(16925575-16925656)
chr1 (186-267)||(23531794-23531875)
chr1 (175-220)||(23636054-23636099)
chr1 (187-244)||(40686775-40686832)
chr1 (187-219)||(18946051-18946083)
chr1 (170-238)||(19637759-19637827)
chr1 (176-228)||(22794084-22794136)
[»] scaffold0024 (1 HSPs)
scaffold0024 (187-243)||(18125-18181)
[»] scaffold0504 (1 HSPs)
scaffold0504 (188-231)||(8715-8758)
[»] scaffold0004 (1 HSPs)
scaffold0004 (177-216)||(101013-101052)
[»] scaffold0316 (1 HSPs)
scaffold0316 (97-143)||(16215-16261)
[»] scaffold0022 (1 HSPs)
scaffold0022 (166-243)||(99879-99956)
[»] scaffold0314 (1 HSPs)
scaffold0314 (187-223)||(8954-8990)
[»] scaffold0171 (1 HSPs)
scaffold0171 (163-211)||(23438-23486)


Alignment Details
Target: chr3 (Bit Score: 139; Significance: 9e-73; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 18 - 210
Target Start/End: Complemental strand, 7949159 - 7948978
Alignment:
Q  18 tcaaccgttgggttcagttagatttttaaaacattgattctaacatctttccaagatgacatggtatggttataatctgtgaagcacaaatactcatcgt 117  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  7949159 tcaaccgtcgggttcagttagatttttaaaacattgattctaacatctttccaagatgacatggtatggttataatctctgaagcacaaatactcatcgt 7949060  T
Q  118 attaggcgtgtcctggtgttggatacaaatcatgtccgacacgactccgacacgactccgacacatacaattacattgaattatgtcattttt 210  Q
    |||||| ||||||||||||||||||||||||||||||||||||           |||| ||||||||||||||||||||||||||||||||||    
T  7949059 attaggtgtgtcctggtgttggatacaaatcatgtccgacacg-----------actctgacacatacaattacattgaattatgtcattttt 7948978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 176 - 243
Target Start/End: Original strand, 41319316 - 41319383
Alignment:
Q  176 cgacacatacaattacattgaattatgtcattttttcaaaattttatccgtgtcaatgtgtccgtgtc 243  Q
    |||||||||||||||||||||||||||||||||||||||| | ||||  ||||| | |||||||||||    
T  41319316 cgacacatacaattacattgaattatgtcattttttcaaattattattggtgtcgacgtgtccgtgtc 41319383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 166 - 266
Target Start/End: Complemental strand, 11093633 - 11093533
Alignment:
Q  166 gacacgactccgacacatacaattacattgaattatgtcattttttcaaaattttatccgtgtcaatgtgtccgtgtcagtattgtgtccagtgtccgtg 265  Q
    |||||||| || ||||||   ||||| ||||||||||||||||||||||| | ||||| |||| |||||||||||| | ||||||||| | || ||||||    
T  11093633 gacacgacaccaacacatctgattactttgaattatgtcattttttcaaattattatcagtgtaaatgtgtccgtgcccgtattgtgttcggtatccgtg 11093534  T
Q  266 t 266  Q
    |    
T  11093533 t 11093533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 187 - 223
Target Start/End: Original strand, 14338500 - 14338536
Alignment:
Q  187 attacattgaattatgtcattttttcaaaattttatc 223  Q
    |||||||||||||||||||||||||||||||||||||    
T  14338500 attacattgaattatgtcattttttcaaaattttatc 14338536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 176 - 271
Target Start/End: Original strand, 24205047 - 24205142
Alignment:
Q  176 cgacacatacaattacattgaattatgtcattttttcaaaattttatccgtgtcaatgtgtccgtgtcagtattgtgtccagtgtccgtgtctgtg 271  Q
    |||||| || ||||||| || ||||||||||||| ||||| | |||||||||||   ||||| ||||| || | |||||| |||||||||||||||    
T  24205047 cgacacttataattacactgtattatgtcattttctcaaattattatccgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtgtctgtg 24205142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 228
Target Start/End: Original strand, 12704674 - 12704715
Alignment:
Q  187 attacattgaattatgtcattttttcaaaattttatccgtgt 228  Q
    ||||||||||||||||||||||||||||| | ||||||||||    
T  12704674 attacattgaattatgtcattttttcaaattattatccgtgt 12704715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 231
Target Start/End: Complemental strand, 15864287 - 15864243
Alignment:
Q  187 attacattgaattatgtcattttttcaaaattttatccgtgtcaa 231  Q
    |||| |||||||||||||||||| |||||| ||||||||||||||    
T  15864287 attatattgaattatgtcattttctcaaaactttatccgtgtcaa 15864243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 215
Target Start/End: Original strand, 25908846 - 25908884
Alignment:
Q  177 gacacatacaattacattgaattatgtcattttttcaaa 215  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  25908846 gacacatacgattatattgaattatgtcattttttcaaa 25908884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 229
Target Start/End: Original strand, 49651779 - 49651845
Alignment:
Q  163 tccgacacgactccgacacatacaattacattgaattatgtcattttttcaaaattttatccgtgtc 229  Q
    ||||||||||| ||||||| |  ||||||| |||||||||| ||||||||||| | ||| |||||||    
T  49651779 tccgacacgacaccgacacttgtaattacagtgaattatgtgattttttcaaattattagccgtgtc 49651845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 215
Target Start/End: Complemental strand, 7928509 - 7928464
Alignment:
Q  170 cgactccgacacatacaattacattgaattatgtcattttttcaaa 215  Q
    |||| |||||||||| ||||||| |||||||||| |||||||||||    
T  7928509 cgacaccgacacatataattacactgaattatgtgattttttcaaa 7928464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 215
Target Start/End: Original strand, 25948880 - 25948932
Alignment:
Q  163 tccgacacgactccgacacatacaattacattgaattatgtcattttttcaaa 215  Q
    ||||||||||| || |||| || ||||||| |||||||||| |||||||||||    
T  25948880 tccgacacgacaccaacacttataattacactgaattatgtgattttttcaaa 25948932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 215
Target Start/End: Complemental strand, 39002094 - 39002046
Alignment:
Q  167 acacgactccgacacatacaattacattgaattatgtcattttttcaaa 215  Q
    ||||||| | |||| ||| |||||||||||||||||| |||||||||||    
T  39002094 acacgacactgacatatataattacattgaattatgtgattttttcaaa 39002046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 5e-28; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 187 - 270
Target Start/End: Complemental strand, 1885615 - 1885532
Alignment:
Q  187 attacattgaattatgtcattttttcaaaattttatccgtgtcaatgtgtccgtgtcagtattgtgtccagtgtccgtgtctgt 270  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| | |||||| ||||||||||||||    
T  1885615 attacattgaattatgtcattttttcaaaattttatccgtgtcgatgtgtccgtatcagtgtcgtgtccggtgtccgtgtctgt 1885532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 187 - 246
Target Start/End: Original strand, 5937438 - 5937497
Alignment:
Q  187 attacattgaattatgtcattttttcaaaattttatccgtgtcaatgtgtccgtgtcagt 246  Q
    ||||||||||||||||||||||| ||||||||||||||||||  | ||||| ||||||||    
T  5937438 attacattgaattatgtcattttctcaaaattttatccgtgttgacgtgtctgtgtcagt 5937497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 187 - 236
Target Start/End: Original strand, 44317303 - 44317352
Alignment:
Q  187 attacattgaattatgtcattttttcaaaattttatccgtgtcaatgtgt 236  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||| ||||    
T  44317303 attacattgaattatgtcatttttttaaaattttatcagtgtcaacgtgt 44317352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 187 - 237
Target Start/End: Original strand, 2144556 - 2144604
Alignment:
Q  187 attacattgaattatgtcattttttcaaaattttatccgtgtcaatgtgtc 237  Q
    ||||||||||||||||||||||| ||||||||||||  |||||||||||||    
T  2144556 attacattgaattatgtcattttctcaaaattttat--gtgtcaatgtgtc 2144604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 167 - 242
Target Start/End: Original strand, 10702541 - 10702615
Alignment:
Q  167 acacgactccgacacatacaattacattgaattatgtcattttttcaaaattttatccgtgtcaatgtgtccgtgt 242  Q
    |||| |||| ||||| || ||||||||||||| |||||||||| ||||||||||||| || || ||||||||||||    
T  10702541 acacaactctgacacttataattacattgaat-atgtcattttctcaaaattttatcagtatcgatgtgtccgtgt 10702615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 187 - 238
Target Start/End: Original strand, 35238201 - 35238252
Alignment:
Q  187 attacattgaattatgtcattttttcaaaattttatccgtgtcaatgtgtcc 238  Q
    |||| |||||||||||||||||| ||||||| ||||| ||||||||||||||    
T  35238201 attatattgaattatgtcattttctcaaaatattatcggtgtcaatgtgtcc 35238252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 248
Target Start/End: Original strand, 38134411 - 38134484
Alignment:
Q  175 ccgacacatacaattacattgaattatgtcattttttcaaaattttatccgtgtcaatgtgtccgtgtcagtat 248  Q
    ||||||||||  ||||||||||||||||||||||| ||||| | ||||| |||||||  ||||| |||| ||||    
T  38134411 ccgacacatatgattacattgaattatgtcattttctcaaattattatcggtgtcaacatgtccatgtccgtat 38134484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 176 - 215
Target Start/End: Original strand, 19930947 - 19930986
Alignment:
Q  176 cgacacatacaattacattgaattatgtcattttttcaaa 215  Q
    ||||||||| |||||||||||||||||||||||| |||||    
T  19930947 cgacacatataattacattgaattatgtcattttatcaaa 19930986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 164 - 215
Target Start/End: Complemental strand, 32308185 - 32308134
Alignment:
Q  164 ccgacacgactccgacacatacaattacattgaattatgtcattttttcaaa 215  Q
    |||||||||| | |||||||||||||||| |||||||||| ||||| |||||    
T  32308185 ccgacacgacactgacacatacaattacactgaattatgtgattttctcaaa 32308134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 244
Target Start/End: Original strand, 42720897 - 42720964
Alignment:
Q  177 gacacatacaattacattgaattatgtcattttttcaaaattttatccgtgtcaatgtgtccgtgtca 244  Q
    |||||||| ||||||||| |||||||| ||||||||||| | ||| | ||||||| ||||| ||||||    
T  42720897 gacacatataattacatttaattatgtgattttttcaaattattagcggtgtcaacgtgtcagtgtca 42720964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 223
Target Start/End: Original strand, 9050128 - 9050186
Alignment:
Q  165 cgacacgactccgacacatacaattacattgaattatgtcattttttcaaaattttatc 223  Q
    ||||||||| | |||||||   |||| |||||| |||||||||||||||||||||||||    
T  9050128 cgacacgacacagacacatgtgattatattgaactatgtcattttttcaaaattttatc 9050186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 215
Target Start/End: Complemental strand, 24339757 - 24339656
Alignment:
Q  109 actcatcgtattaggcgtgtcctggtgttggatacaaatcatgtccgacacgactccgacacgactccgacacatacaattacattgaattatgtcattt 208  Q
    |||| ||| ||||||||||||| ||||| ||||||   || |||||||||     |||||||||| ||||||| |  ||||||| |||||||||| ||||    
T  24339757 actcctcggattaggcgtgtcccggtgtcggatacgtgtcgtgtccgaca-----ccgacacgacaccgacacttgtaattacactgaattatgtgattt 24339663  T
Q  209 tttcaaa 215  Q
    |||||||    
T  24339662 tttcaaa 24339656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 270
Target Start/End: Original strand, 26329376 - 26329482
Alignment:
Q  164 ccgacacgactccgacacatacaattacattgaattatgtcattttttcaaaattttatccgtgtcaatgtgtccgtgtcagtattgtgtccagtgtccg 263  Q
    |||||||||| |||||||||| ||||||| |||||| |||  |||| ||||| | ||| |  ||||   ||||| ||||| || | ||||||||||||||    
T  26329376 ccgacacgacgccgacacatataattacactgaattgtgtgtttttctcaaattattaacgatgtcggcgtgtcagtgtctgtgtcgtgtccagtgtccg 26329475  T
Q  264 tgtctgt 270  Q
    |||||||    
T  26329476 tgtctgt 26329482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 215
Target Start/End: Complemental strand, 35862016 - 35861978
Alignment:
Q  177 gacacatacaattacattgaattatgtcattttttcaaa 215  Q
    ||||| ||||||||||||||||||||| |||||||||||    
T  35862016 gacacttacaattacattgaattatgtgattttttcaaa 35861978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 244
Target Start/End: Original strand, 36013815 - 36013873
Alignment:
Q  187 attacattgaattatgtcattttt-tcaaaattttatccgtgtcaatgtgtccgtgtca 244  Q
    |||||||||||||||||||||||| ||||| | |||||  |||||||||||| ||||||    
T  36013815 attacattgaattatgtcatttttctcaaattattatcattgtcaatgtgtcagtgtca 36013873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 215
Target Start/End: Complemental strand, 41360965 - 41360924
Alignment:
Q  174 tccgacacatacaattacattgaattatgtcattttttcaaa 215  Q
    ||||||||||||| |||||||||||||||| ||||| |||||    
T  41360965 tccgacacatacagttacattgaattatgttattttctcaaa 41360924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 229
Target Start/End: Complemental strand, 44021016 - 44020975
Alignment:
Q  188 ttacattgaattatgtcattttttcaaaattttatccgtgtc 229  Q
    |||||||||||||||| ||||||||||| | |||||||||||    
T  44021016 ttacattgaattatgtaattttttcaaattattatccgtgtc 44020975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 219
Target Start/End: Original strand, 2143870 - 2143902
Alignment:
Q  187 attacattgaattatgtcattttttcaaaattt 219  Q
    ||||||||||||||||||||||| |||||||||    
T  2143870 attacattgaattatgtcattttctcaaaattt 2143902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 229
Target Start/End: Original strand, 3528089 - 3528121
Alignment:
Q  197 attatgtcattttttcaaaattttatccgtgtc 229  Q
    |||||| ||||||||||||||||||||||||||    
T  3528089 attatgccattttttcaaaattttatccgtgtc 3528121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 215
Target Start/End: Original strand, 4008569 - 4008609
Alignment:
Q  175 ccgacacatacaattacattgaattatgtcattttttcaaa 215  Q
    |||||||||||||||||||||||| |||| ||||| |||||    
T  4008569 ccgacacatacaattacattgaatcatgtaattttatcaaa 4008609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 215
Target Start/End: Original strand, 4013961 - 4014001
Alignment:
Q  175 ccgacacatacaattacattgaattatgtcattttttcaaa 215  Q
    |||||||||||||||||||||||| |||| ||||| |||||    
T  4013961 ccgacacatacaattacattgaatcatgtaattttatcaaa 4014001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 215
Target Start/End: Original strand, 7241011 - 7241039
Alignment:
Q  187 attacattgaattatgtcattttttcaaa 215  Q
    |||||||||||||||||||||||||||||    
T  7241011 attacattgaattatgtcattttttcaaa 7241039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 170
Target Start/End: Original strand, 21138955 - 21139007
Alignment:
Q  118 attaggcgtgtcctggtgttggatacaaatcatgtccgacacgactccgacac 170  Q
    |||| |||||||||||||| ||| ||  ||||||||||||||||| |||||||    
T  21138955 attaagcgtgtcctggtgtcggacacgtatcatgtccgacacgacaccgacac 21139007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 223
Target Start/End: Complemental strand, 37820122 - 37820086
Alignment:
Q  187 attacattgaattatgtcattttttcaaaattttatc 223  Q
    |||||||| |||||||| |||||||||||||||||||    
T  37820122 attacattaaattatgttattttttcaaaattttatc 37820086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 187 - 264
Target Start/End: Complemental strand, 1334703 - 1334626
Alignment:
Q  187 attacattgaattatgtcattttttcaaaattttatccgtgtcaatgtgtccgtgtcagtattgtgtccagtgtccgt 264  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| | |||||| ||||||||    
T  1334703 attacattgaattatgtccttttttcaaaattttatccgtgtcaatgtgtctgtgtcagtgtcgtgtccggtgtccgt 1334626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 165 - 241
Target Start/End: Complemental strand, 19369881 - 19369805
Alignment:
Q  165 cgacacgactccgacacatacaattacattgaattatgtcattttttcaaaattttatccgtgtcaatgtgtccgtg 241  Q
    ||||||||| ||||||| |   ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||    
T  19369881 cgacacgacaccgacacttgtgattacattgaattatgtcattttctcaaaattttatccgtgtcaacgtgtccgtg 19369805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 187 - 236
Target Start/End: Complemental strand, 10031612 - 10031563
Alignment:
Q  187 attacattgaattatgtcattttttcaaaattttatccgtgtcaatgtgt 236  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||| ||||    
T  10031612 attacattgaattatgtcattttctcaaaattttatcggtgtcaacgtgt 10031563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 271
Target Start/End: Complemental strand, 5579694 - 5579612
Alignment:
Q  189 tacattgaattatgtcattttttcaaaattttatccgtgtcaatgtgtccgtgtcagtattgtgtccagtgtccgtgtctgtg 271  Q
    ||||||||| ||||||||||| ||||||||||||| ||||| | || | |||||||| || || |||||| || |||||||||    
T  5579694 tacattgaactatgtcattttctcaaaattttatcggtgtcgacgtattcgtgtcagcatcgtatccagtatctgtgtctgtg 5579612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 223
Target Start/End: Original strand, 6751899 - 6751935
Alignment:
Q  187 attacattgaattatgtcattttttcaaaattttatc 223  Q
    ||||||||||||||||||||||| |||||||||||||    
T  6751899 attacattgaattatgtcattttctcaaaattttatc 6751935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 215
Target Start/End: Original strand, 9024169 - 9024221
Alignment:
Q  163 tccgacacgactccgacacatacaattacattgaattatgtcattttttcaaa 215  Q
    ||||||||||| | ||||||||  ||||||||||||||||||||||| |||||    
T  9024169 tccgacacgacactgacacatatgattacattgaattatgtcattttctcaaa 9024221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 223
Target Start/End: Complemental strand, 29959217 - 29959181
Alignment:
Q  187 attacattgaattatgtcattttttcaaaattttatc 223  Q
    ||||||||||||||||||||||| |||||||||||||    
T  29959217 attacattgaattatgtcattttctcaaaattttatc 29959181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 159 - 229
Target Start/End: Original strand, 785444 - 785515
Alignment:
Q  159 cgactccgacacgactccgacacatacaattacattgaattatgtcatt-ttttcaaaattttatccgtgtc 229  Q
    |||| |||||||||| ||||||| |   ||||||||||||||||||||| |||| ||||||||||| |||||    
T  785444 cgacaccgacacgacaccgacacttgtgattacattgaattatgtcattattttgaaaattttatcagtgtc 785515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 170 - 221
Target Start/End: Complemental strand, 7378038 - 7377987
Alignment:
Q  170 cgactccgacacatacaattacattgaattatgtcattttttcaaaatttta 221  Q
    |||| |||||||||| |||||||||||||||||| ||||| ||||| |||||    
T  7378038 cgacaccgacacatataattacattgaattatgtgattttctcaaattttta 7377987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 267
Target Start/End: Original strand, 26402697 - 26402779
Alignment:
Q  187 attacattgaattatgtcatttt--ttcaaaattttatccgtgtcaatgtgtccgtgtcagtattgtgtccagtgtccgtgtc 267  Q
    |||||| ||||||||||||||||  ||||||||||||||  |||| || |||| |||||||| |  ||||| |||||||||||    
T  26402697 attacactgaattatgtcattttttttcaaaattttatcattgtcgatctgtctgtgtcagtgtcatgtccggtgtccgtgtc 26402779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 215
Target Start/End: Complemental strand, 9617494 - 9617448
Alignment:
Q  169 acgactccgacacatacaattacattgaattatgtcattttttcaaa 215  Q
    ||||| |||||||||| |||||||||||||||||| ||||| |||||    
T  9617494 acgacaccgacacatataattacattgaattatgtgattttctcaaa 9617448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 242
Target Start/End: Complemental strand, 13815507 - 13815429
Alignment:
Q  164 ccgacacgactccgacacatacaattacattgaattatgtcattttttcaaaattttatccgtgtcaatgtgtccgtgt 242  Q
    |||||||||| |||| ||||| || | ||||||||||||| ||||| ||||||| |||||  ||||| |||||| ||||    
T  13815507 ccgacacgacaccgagacatataacttcattgaattatgtgattttctcaaaatattatcgatgtcagtgtgtcggtgt 13815429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 264
Target Start/End: Original strand, 30866148 - 30866238
Alignment:
Q  174 tccgacacatacaattacattgaattatgtcattttttcaaaattttatccgtgtcaatgtgtccgtgtcagtattgtgtccagtgtccgt 264  Q
    ||||||||||| |||||||||||||||||| ||||| ||||| | ||| | ||||   |||||| |||||||| |  ||||| ||||||||    
T  30866148 tccgacacatataattacattgaattatgtgattttctcaaattattagcggtgttggtgtgtcggtgtcagtgtcatgtccggtgtccgt 30866238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 215
Target Start/End: Complemental strand, 9629457 - 9629397
Alignment:
Q  150 tgtccgacacgactccgacacgactccgacacatacaattacattgaattatgtcattttttcaaa 215  Q
    ||||||||||||| ||||||     |||||||||| |||||||||||||||||| ||||| |||||    
T  9629457 tgtccgacacgacaccgaca-----ccgacacatataattacattgaattatgtgattttctcaaa 9629397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 215
Target Start/End: Complemental strand, 17168945 - 17168908
Alignment:
Q  178 acacatacaattacattgaattatgtcattttttcaaa 215  Q
    ||||||| | ||||||||||||||||||||||||||||    
T  17168945 acacatatagttacattgaattatgtcattttttcaaa 17168908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 215
Target Start/End: Original strand, 33001289 - 33001334
Alignment:
Q  170 cgactccgacacatacaattacattgaattatgtcattttttcaaa 215  Q
    |||| |||||||||| ||||||||| |||||||| |||||||||||    
T  33001289 cgacaccgacacatataattacatttaattatgtgattttttcaaa 33001334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 244
Target Start/End: Complemental strand, 34446607 - 34446550
Alignment:
Q  187 attacattgaattatgtcattttttcaaaattttatccgtgtcaatgtgtccgtgtca 244  Q
    |||||| |||||||||||||||| ||||| | ||||||||||||  ||||| ||||||    
T  34446607 attacactgaattatgtcattttctcaaattattatccgtgtcagagtgtctgtgtca 34446550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 215
Target Start/End: Original strand, 9195751 - 9195799
Alignment:
Q  167 acacgactccgacacatacaattacattgaattatgtcattttttcaaa 215  Q
    ||||||| |||||||||| ||||||| | |||||||||||||| |||||    
T  9195751 acacgacaccgacacatataattacactaaattatgtcattttctcaaa 9195799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 215
Target Start/End: Complemental strand, 16766767 - 16766711
Alignment:
Q  159 cgactccgacacgactccgacacatacaattacattgaattatgtcattttttcaaa 215  Q
    |||| |||||||||| ||||||| |  ||||||| |||||||||| |||||||||||    
T  16766767 cgacaccgacacgacaccgacacttgtaattacactgaattatgtgattttttcaaa 16766711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 230
Target Start/End: Complemental strand, 28715338 - 28715294
Alignment:
Q  186 aattacattgaattatgtcattttttcaaaattttatccgtgtca 230  Q
    ||||||| |||||||||||||||||||||| | ||| ||||||||    
T  28715338 aattacactgaattatgtcattttttcaaattattagccgtgtca 28715294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 187 - 255
Target Start/End: Original strand, 21319962 - 21320030
Alignment:
Q  187 attacattgaattatgtcattttttcaaaattttatccgtgtcaatgtgtccgtgtcagtattgtgtcc 255  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||| | ||||||    
T  21319962 attacattgaattatatcattttttcaaaattttatccgtgtcaatgtgtccatatcagtgtcgtgtcc 21320030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 163 - 242
Target Start/End: Original strand, 38749556 - 38749635
Alignment:
Q  163 tccgacacgactccgacacatacaattacattgaattatgtcattttttcaaaattttatccgtgtcaatgtgtccgtgt 242  Q
    |||||||| || || ||||||| |||||||||||||||||||||||||||||| | ||||| ||||| |  |||||||||    
T  38749556 tccgacacaacaccaacacatataattacattgaattatgtcattttttcaaattattatcggtgtcgacatgtccgtgt 38749635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 187 - 246
Target Start/End: Original strand, 19167593 - 19167653
Alignment:
Q  187 attacattgaattatgtcatttt-ttcaaaattttatccgtgtcaatgtgtccgtgtcagt 246  Q
    ||||||||||||| ||||||||| |||||||||||||| ||||||| ||||| ||||||||    
T  19167593 attacattgaattgtgtcatttttttcaaaattttatcggtgtcaacgtgtctgtgtcagt 19167653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 229
Target Start/End: Original strand, 30080518 - 30080560
Alignment:
Q  187 attacattgaattatgtcattttttcaaaattttatccgtgtc 229  Q
    ||||||||||||||||||||||| ||||||||||||| |||||    
T  30080518 attacattgaattatgtcattttctcaaaattttatcagtgtc 30080560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 271
Target Start/End: Original strand, 26205777 - 26205861
Alignment:
Q  187 attacattgaattatgtcattttttcaaaattttatccgtgtcaatgtgtccgtgtcagtattgtgtccagtgtccgtgtctgtg 271  Q
    |||||| |||||||||||||||| ||||||||||||| || || | ||||| |||||  | |  ||||| |||||||||||||||    
T  26205777 attacactgaattatgtcattttctcaaaattttatcggtatcgacgtgtcagtgtccatgtcatgtccggtgtccgtgtctgtg 26205861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 215
Target Start/End: Original strand, 41558647 - 41558699
Alignment:
Q  163 tccgacacgactccgacacatacaattacattgaattatgtcattttttcaaa 215  Q
    ||||||||||| | |||||||  |||||||||||||||||||||||| |||||    
T  41558647 tccgacacgacactgacacatttaattacattgaattatgtcattttctcaaa 41558699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 222
Target Start/End: Complemental strand, 10010596 - 10010561
Alignment:
Q  187 attacattgaattatgtcattttttcaaaattttat 222  Q
    |||||| |||||||||||||||||||||||||||||    
T  10010596 attacaatgaattatgtcattttttcaaaattttat 10010561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 209
Target Start/End: Complemental strand, 18592143 - 18592093
Alignment:
Q  159 cgactccgacacgactccgacacatacaattacattgaattatgtcatttt 209  Q
    |||| |||||||||| ||| |||||| |||||||||||||||||| |||||    
T  18592143 cgacaccgacacgacaccggcacatataattacattgaattatgtaatttt 18592093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 238
Target Start/End: Complemental strand, 38866510 - 38866444
Alignment:
Q  174 tccgacacatacaa-ttacattgaattatgtcatt-ttttcaaaattttatccgtgtcaatgtgtcc 238  Q
    ||||||||||| || |||||||||||||||||||| |||||||||| ||||| ||||| | ||||||    
T  38866510 tccgacacatataaattacattgaattatgtcatttttttcaaaatattatcggtgtcgacgtgtcc 38866444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 266
Target Start/End: Original strand, 41558701 - 41558779
Alignment:
Q  188 ttacattgaattatgtcattttttcaaaattttatccgtgtcaatgtgtccgtgtcagtattgtgtccagtgtccgtgt 266  Q
    |||| ||||||||||||||||| ||||| | ||||  ||||||||||||| ||||| || | || ||| ||||||||||    
T  41558701 ttactttgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgtgt 41558779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 267
Target Start/End: Original strand, 13287395 - 13287496
Alignment:
Q  166 gacacgactccgacacatacaattacattgaattatgtcattttttcaaaattttatccgtgtcaatgtgtccgtgtcagtattgtgtccagtgtccgtg 265  Q
    |||||||| ||||||| |  | ||||| |||||||||| ||||||||||| | ||||| ||||| | ||||  ||||| || | |||||| |||||||||    
T  13287395 gacacgacaccgacacttgtagttacactgaattatgtgattttttcaaattattatctgtgtcgacgtgttagtgtccgtgtcgtgtccggtgtccgtg 13287494  T
Q  266 tc 267  Q
    ||    
T  13287495 tc 13287496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 218
Target Start/End: Complemental strand, 25630147 - 25630106
Alignment:
Q  177 gacacatacaattacattgaattatgtcattttttcaaaatt 218  Q
    |||||||||||||||| |||||||||| ||||| ||||||||    
T  25630147 gacacatacaattacagtgaattatgtaattttctcaaaatt 25630106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 236
Target Start/End: Complemental strand, 38784848 - 38784799
Alignment:
Q  187 attacattgaattatgtcattttttcaaaattttatccgtgtcaatgtgt 236  Q
    ||||||||||||||| ||||||||||| ||||||||| ||| | ||||||    
T  38784848 attacattgaattatatcattttttcacaattttatcggtgccgatgtgt 38784799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 228
Target Start/End: Original strand, 18106654 - 18106690
Alignment:
Q  192 attgaattatgtcattttttcaaaattttatccgtgt 228  Q
    |||||||||| ||||||||||||||||||||| ||||    
T  18106654 attgaattatatcattttttcaaaattttatcggtgt 18106690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 215
Target Start/End: Complemental strand, 31084389 - 31084337
Alignment:
Q  163 tccgacacgactccgacacatacaattacattgaattatgtcattttttcaaa 215  Q
    |||||||||||  |||||| |  |||||||||||||||||| |||||||||||    
T  31084389 tccgacacgacatcgacacttgtaattacattgaattatgtgattttttcaaa 31084337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 187 - 246
Target Start/End: Original strand, 26915257 - 26915316
Alignment:
Q  187 attacattgaattatgtcattttttcaaaattttatccgtgtcaatgtgtccgtgtcagt 246  Q
    |||||||| |||||||||||||| ||||||||||||||||||| | ||||||||||||||    
T  26915257 attacattaaattatgtcattttctcaaaattttatccgtgtcgacgtgtccgtgtcagt 26915316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 109 - 271
Target Start/End: Complemental strand, 44067631 - 44067474
Alignment:
Q  109 actcatcgtattaggcgtgtcctggtgttggatacaaatca-tgtccgacacgactccgacacgactccgacacatacaattacattgaattatgtcatt 207  Q
    |||| ||| ||||||||||||||||||| ||| ||  |||| ||||||||||||| ||||||||||      || || ||||||| || |||||||||||    
T  44067631 actcctcgaattaggcgtgtcctggtgtcggacacgcatcagtgtccgacacgacaccgacacgac------acttataattacactgtattatgtcatt 44067538  T
Q  208 ttttcaaaattttatccgtgtcaatgtgtccgtgtcagtattgtgtccagtgtccgtgtctgtg 271  Q
    || ||||| | |||||||||||   ||||| ||||| || | |||||  |||||||||||||||    
T  44067537 ttctcaaattattatccgtgtcggcgtgtcagtgtcggtgtggtgtctggtgtccgtgtctgtg 44067474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 229
Target Start/End: Original strand, 34073995 - 34074037
Alignment:
Q  187 attacattgaattatgtcattttttcaaaattttatccgtgtc 229  Q
    |||||||| |||||||||||||||||||||||||||| |||||    
T  34073995 attacattaaattatgtcattttttcaaaattttatcggtgtc 34074037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 237
Target Start/End: Original strand, 34201056 - 34201113
Alignment:
Q  180 acatacaattacattgaattatgtcattttttcaaaattttatccgtgtcaatgtgtc 237  Q
    ||||| |||||||||||||||||||||||| ||||| | ||||  |||||||||||||    
T  34201056 acatataattacattgaattatgtcattttctcaaattattattagtgtcaatgtgtc 34201113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 255
Target Start/End: Complemental strand, 42874564 - 42874496
Alignment:
Q  187 attacattgaattatgtcattttttcaaaattttatccgtgtcaatgtgtccgtgtcagtattgtgtcc 255  Q
    ||||||||||||||||||||||| ||||||| ||| | ||||| | |||||||||| ||| | ||||||    
T  42874564 attacattgaattatgtcattttctcaaaatgttaacggtgtcgacgtgtccgtgttagtgtcgtgtcc 42874496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 228
Target Start/End: Complemental strand, 27733889 - 27733848
Alignment:
Q  187 attacattgaattatgtcattttttcaaaattttatccgtgt 228  Q
    ||||||||||||||| ||||||| ||||||||||||| ||||    
T  27733889 attacattgaattatatcattttctcaaaattttatcggtgt 27733848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 242
Target Start/End: Complemental strand, 5307123 - 5307048
Alignment:
Q  166 gacacgactccgacacatacaattacattgaattatgtcattttttcaaaattttatccgtgtcaatgtgtccgtgt 242  Q
    |||||||| ||||||| ||  ||| |||||||||||||||| |||||||| | ||||| ||||| | ||||||||||    
T  5307123 gacacgacaccgacacttatgatttcattgaattatgtcat-ttttcaaattattatcagtgtcgacgtgtccgtgt 5307048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 223
Target Start/End: Original strand, 6960693 - 6960729
Alignment:
Q  187 attacattgaattatgtcattttttcaaaattttatc 223  Q
    |||||||| |||||||||||||| |||||||||||||    
T  6960693 attacattaaattatgtcattttctcaaaattttatc 6960729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 243
Target Start/End: Original strand, 14943114 - 14943170
Alignment:
Q  187 attacattgaattatgtcattttttcaaaattttatccgtgtcaatgtgtccgtgtc 243  Q
    |||||| ||||| | |||||||| ||||||||||||  ||||||||||||| |||||    
T  14943114 attacactgaatcaagtcattttctcaaaattttattggtgtcaatgtgtcagtgtc 14943170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 215
Target Start/End: Complemental strand, 22652046 - 22651990
Alignment:
Q  159 cgactccgacacgactccgacacatacaattacattgaattatgtcattttttcaaa 215  Q
    |||| |||||||||| ||||||| |  ||||| |||||||||||| |||||||||||    
T  22652046 cgacaccgacacgacaccgacacttgtaattatattgaattatgtgattttttcaaa 22651990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 234
Target Start/End: Original strand, 25104608 - 25104657
Alignment:
Q  183 tacaattacattgaattatgtcattttttcaaaattttatccgtgtcaatgt 234  Q
    |||| ||||||||||||  |||||||| ||||||||||||| ||||||||||    
T  25104608 tacatttacattgaatt--gtcattttgtcaaaattttatcggtgtcaatgt 25104657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 159
Target Start/End: Complemental strand, 28819328 - 28819256
Alignment:
Q  87 ttataatctgtgaagcacaaatactcatcgtattaggcgtgtcctggtgttggatacaaatcatgtccgacac 159  Q
    |||| |||| ||||||||| |||||| ||| ||||| ||||| | ||||||||||||| ||| |||| |||||    
T  28819328 ttatgatctatgaagcacatatactcctcggattagccgtgttccggtgttggatacatatcgtgtctgacac 28819256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 219
Target Start/End: Complemental strand, 31119129 - 31119097
Alignment:
Q  187 attacattgaattatgtcattttttcaaaattt 219  Q
    ||||||||||||||||||||||| |||||||||    
T  31119129 attacattgaattatgtcattttctcaaaattt 31119097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 215
Target Start/End: Original strand, 31236582 - 31236622
Alignment:
Q  175 ccgacacatacaattacattgaattatgtcattttttcaaa 215  Q
    |||||||||| |||||||||||||||||| ||||| |||||    
T  31236582 ccgacacatataattacattgaattatgtgattttctcaaa 31236622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 190 - 255
Target Start/End: Complemental strand, 10635029 - 10634964
Alignment:
Q  190 acattgaattatgtcattttttcaaaattttatccgtgtcaatgtgtccgtgtcagtattgtgtcc 255  Q
    |||||||||||||||||||||||||||||||||| || || | ||| |||||||||| ||||||||    
T  10635029 acattgaattatgtcattttttcaaaattttatcagtatcgacgtgcccgtgtcagtgttgtgtcc 10634964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 188 - 233
Target Start/End: Complemental strand, 28663533 - 28663488
Alignment:
Q  188 ttacattgaattatgtcattttttcaaaattttatccgtgtcaatg 233  Q
    |||||||||||||||||||||| |||||||||||||||||||||||    
T  28663533 ttacattgaattatgtcattttctcaaaattttatccgtgtcaatg 28663488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 187 - 243
Target Start/End: Original strand, 34589723 - 34589779
Alignment:
Q  187 attacattgaattatgtcattttttcaaaattttatccgtgtcaatgtgtccgtgtc 243  Q
    ||||||||||||||||||||||| ||||| | ||||| |||||||||||||||||||    
T  34589723 attacattgaattatgtcattttctcaaattgttatcggtgtcaatgtgtccgtgtc 34589779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 223
Target Start/End: Complemental strand, 49887799 - 49887762
Alignment:
Q  186 aattacattgaattatgtcattttttcaaaattttatc 223  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  49887799 aattacattgaattatgtcatttcttcaaaattttatc 49887762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 223
Target Start/End: Complemental strand, 13307919 - 13307883
Alignment:
Q  187 attacattgaattatgtcattttttcaaaattttatc 223  Q
    ||||||||||||||||||||||| |||||||||||||    
T  13307919 attacattgaattatgtcattttctcaaaattttatc 13307883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 243
Target Start/End: Complemental strand, 37496746 - 37496690
Alignment:
Q  187 attacattgaattatgtcattttttcaaaattttatccgtgtcaatgtgtccgtgtc 243  Q
    ||||||||||||||||||||||| ||||||  ||||| ||||||| ||||| |||||    
T  37496746 attacattgaattatgtcattttctcaaaaaattatcggtgtcaacgtgtcagtgtc 37496690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 176 - 271
Target Start/End: Complemental strand, 24343560 - 24343465
Alignment:
Q  176 cgacacatacaattacattgaattatgtcattttttcaaaattttatccgtgtcaatgtgtccgtgtcagtattgtgtccagtgtccgtgtctgtg 271  Q
    |||||| || ||||||| |||||||||| ||||| ||||| | |||||||||||   ||||| | ||| || | |||||| |||||||||||||||    
T  24343560 cgacacctataattacactgaattatgtaattttctcaaattattatccgtgtcggcgtgtcggcgtccgtgtcgtgtccggtgtccgtgtctgtg 24343465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 230
Target Start/End: Complemental strand, 44362708 - 44362665
Alignment:
Q  187 attacattgaattatgtcattttttcaaaattttatccgtgtca 230  Q
    |||||||| |||||||||||||| ||||||||||||| ||||||    
T  44362708 attacattaaattatgtcattttctcaaaattttatcggtgtca 44362665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 229
Target Start/End: Original strand, 18513234 - 18513300
Alignment:
Q  163 tccgacacgactccgacacatacaattacattgaattatgtcattttttcaaaattttatccgtgtc 229  Q
    |||||||| || | ||||||||  ||||||||||||||||||||||| ||||| | ||||| |||||    
T  18513234 tccgacacaacactgacacatatgattacattgaattatgtcattttctcaaattattatcggtgtc 18513300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 254
Target Start/End: Original strand, 19230315 - 19230393
Alignment:
Q  176 cgacacatacaattacattgaattatgtcattttttcaaaattttatccgtgtcaatgtgtccgtgtcagtattgtgtc 254  Q
    |||||| || |||||||||||||||||| ||||| ||||| | |||||  |||| ||||||| ||||  ||||||||||    
T  19230315 cgacacctataattacattgaattatgttattttctcaaattattatctatgtccatgtgtcagtgtttgtattgtgtc 19230393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 220
Target Start/End: Original strand, 10164871 - 10164904
Alignment:
Q  187 attacattgaattatgtcattttttcaaaatttt 220  Q
    |||||||||||||||||||||||||||| |||||    
T  10164871 attacattgaattatgtcattttttcaagatttt 10164904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 215
Target Start/End: Original strand, 12895109 - 12895161
Alignment:
Q  163 tccgacacgactccgacacatacaattacattgaattatgtcattttttcaaa 215  Q
    ||||||||||| ||||||| |  |||||| ||||||||||| |||||||||||    
T  12895109 tccgacacgacaccgacacttgtaattactttgaattatgtgattttttcaaa 12895161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 243
Target Start/End: Complemental strand, 56049930 - 56049863
Alignment:
Q  175 ccgacacatacaattacattgaattatgtcattttttcaaaattttatccgtgtcaatgtgtccgtgtc 243  Q
    ||||||||||  ||||||||||| ||||||| ||| ||||| | ||||| ||||| |||||||||||||    
T  56049930 ccgacacatatgattacattgaactatgtca-tttctcaaattattatcggtgtcgatgtgtccgtgtc 56049863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 187 - 271
Target Start/End: Original strand, 43586022 - 43586106
Alignment:
Q  187 attacattgaattatgtcattttttcaaaattttatccgtgtcaatgtgtccgtgtcagtattgtgtccagtgtccgtgtctgtg 271  Q
    ||||||||||||||||||||||| ||||||||||||| ||||  | ||||| |||||||||  |||||| |||||| ||| ||||    
T  43586022 attacattgaattatgtcattttctcaaaattttatctgtgttgacgtgtcagtgtcagtaccgtgtccggtgtccatgtatgtg 43586106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 215
Target Start/End: Original strand, 12668417 - 12668468
Alignment:
Q  164 ccgacacgactccgacacatacaattacattgaattatgtcattttttcaaa 215  Q
    |||||||||| ||||||| || ||||||| ||||||||||||||||||||||    
T  12668417 ccgacacgacaccgacacttataattacactgaattatgtcattttttcaaa 12668468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 187 - 242
Target Start/End: Original strand, 13501095 - 13501150
Alignment:
Q  187 attacattgaattatgtcattttttcaaaattttatccgtgtcaatgtgtccgtgt 242  Q
    ||||||||||||||||||||||| | ||||||||||| | ||| ||||||||||||    
T  13501095 attacattgaattatgtcattttcttaaaattttatcggcgtcgatgtgtccgtgt 13501150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 242
Target Start/End: Original strand, 37491860 - 37491927
Alignment:
Q  175 ccgacacatacaattacattgaattatgtcattttttcaaaattttatccgtgtcaatgtgtccgtgt 242  Q
    |||||||||  ||||||||||||||| || ||||| ||||||||||||| || || ||||||| ||||    
T  37491860 ccgacacatttaattacattgaattaagttattttctcaaaattttatcagtatcgatgtgtcagtgt 37491927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 243
Target Start/End: Complemental strand, 39399948 - 39399898
Alignment:
Q  193 ttgaattatgtcattttttcaaaattttatccgtgtcaatgtgtccgtgtc 243  Q
    ||||||||||||||||| | ||||||| ||| ||||||||||||| |||||    
T  39399948 ttgaattatgtcattttctaaaaatttcatcggtgtcaatgtgtcagtgtc 39399898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 231
Target Start/End: Original strand, 45000845 - 45000906
Alignment:
Q  169 acgactccgacacatacaattacattgaattatgtcattttttcaaaattttatccgtgtcaa 231  Q
    ||||| ||||||||||  ||||||||||||| ||||||||| || |||||||||| |||||||    
T  45000845 acgacaccgacacatatgattacattgaattgtgtcattttctc-aaattttatcggtgtcaa 45000906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 229
Target Start/End: Complemental strand, 30563450 - 30563409
Alignment:
Q  188 ttacattgaattatgtcattttttcaaaattttatccgtgtc 229  Q
    |||||||||||||||||||||| ||||| | |||||||||||    
T  30563450 ttacattgaattatgtcattttctcaaattattatccgtgtc 30563409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 215
Target Start/End: Complemental strand, 15528414 - 15528366
Alignment:
Q  167 acacgactccgacacatacaattacattgaattatgtcattttttcaaa 215  Q
    ||||||| |||||| || ||||||||||||||| ||| |||||||||||    
T  15528414 acacgacaccgacaaattcaattacattgaattgtgtgattttttcaaa 15528366  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 210
Target Start/End: Original strand, 28341865 - 28341909
Alignment:
Q  166 gacacgactccgacacatacaattacattgaattatgtcattttt 210  Q
    |||||||| ||||||  || |||||||||||||||||||||||||    
T  28341865 gacacgacaccgacatctataattacattgaattatgtcattttt 28341909  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 271
Target Start/End: Complemental strand, 37497162 - 37497078
Alignment:
Q  187 attacattgaattatgtcattttttcaaaattttatccgtgtcaatgtgtccgtgtcagtattgtgtccagtgtccgtgtctgtg 271  Q
    ||||||||||||| || |||||| ||||| | ||||| ||||| ||||||| ||||  || ||||||||| |||| |||| ||||    
T  37497162 attacattgaattgtggcattttctcaaattattatcagtgtcgatgtgtcagtgtttgttttgtgtccaatgtctgtgtttgtg 37497078  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 229
Target Start/End: Complemental strand, 40682026 - 40681982
Alignment:
Q  185 caattacattgaattatgtcattttttcaaaattttatccgtgtc 229  Q
    ||||||||||||||||||||||||| ||||| | ||||| |||||    
T  40682026 caattacattgaattatgtcattttctcaaattattatcggtgtc 40681982  T

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Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 223
Target Start/End: Complemental strand, 42665650 - 42665614
Alignment:
Q  187 attacattgaattatgtcattttttcaaaattttatc 223  Q
    |||||||||||| ||||||| ||||||||||||||||    
T  42665650 attacattgaatcatgtcatcttttcaaaattttatc 42665614  T

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Target: scaffold0122 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 10319 - 10367
Alignment:
Q  192 attgaattatgtcattttttcaaaattttatccgtgtcaatgtgtccgt 240  Q
    ||||||| |||||||||| ||||||||||||| ||||||||||||||||    
T  10319 attgaataatgtcattttgtcaaaattttatctgtgtcaatgtgtccgt 10367  T

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Target: scaffold0007 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 176 - 271
Target Start/End: Original strand, 225274 - 225369
Alignment:
Q  176 cgacacatacaattacattgaattatgtcattttttcaaaattttatccgtgtcaatgtgtccgtgtcagtattgtgtccagtgtccgtgtctgtg 271  Q
    |||||| || |||||||||| ||||||||||||| ||||| | ||||| |||||   ||||| ||||| || | |||||| |||||||||||||||    
T  225274 cgacacttataattacattgtattatgtcattttctcaaattattatctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtgtctgtg 225369  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 229
Target Start/End: Original strand, 24462287 - 24462329
Alignment:
Q  187 attacattgaattatgtcattttttcaaaattttatccgtgtc 229  Q
    ||||||||||||||||||||||||||||||||| ||| |||||    
T  24462287 attacattgaattatgtcattttttcaaaatttgatcagtgtc 24462329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 215
Target Start/End: Original strand, 1486702 - 1486754
Alignment:
Q  163 tccgacacgactccgacacatacaattacattgaattatgtcattttttcaaa 215  Q
    ||||||||||| ||||||| || ||||||| |||||||||| |||||||||||    
T  1486702 tccgacacgacaccgacacttataattacactgaattatgtgattttttcaaa 1486754  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 40747780 - 40747832
Alignment:
Q  177 gacacatacaattacattgaattatgtcattttttcaaaattttatccgtgtc 229  Q
    ||||| || |||||||||||||||||||||||| ||||| | |||||||||||    
T  40747780 gacacctataattacattgaattatgtcattttctcaaattattatccgtgtc 40747832  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 87 - 138
Target Start/End: Original strand, 38078594 - 38078645
Alignment:
Q  87 ttataatctgtgaagcacaaatactcatcgtattaggcgtgtcctggtgttg 138  Q
    ||||| ||| |||||||| ||||||| ||| |||||||||||||||||||||    
T  38078594 ttatattctatgaagcacgaatactcctcggattaggcgtgtcctggtgttg 38078645  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 215
Target Start/End: Original strand, 30847727 - 30847765
Alignment:
Q  177 gacacatacaattacattgaattatgtcattttttcaaa 215  Q
    ||||||||  |||||||||||||||||||||||||||||    
T  30847727 gacacatatgattacattgaattatgtcattttttcaaa 30847765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 215
Target Start/End: Complemental strand, 6427413 - 6427364
Alignment:
Q  166 gacacgactccgacacatacaattacattgaattatgtcattttttcaaa 215  Q
    |||||||| || ||||||| |||||||||||||||||| ||||| |||||    
T  6427413 gacacgacaccaacacatataattacattgaattatgtgattttctcaaa 6427364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 267
Target Start/End: Complemental strand, 16925656 - 16925575
Alignment:
Q  187 attacattgaattatgtcatttttt-caaaattttatccgtgtcaatgtgtccgtgtcagtattgtgtccagtgtccgtgtc 267  Q
    ||||||||||||| ||| ||||||| |||||||||||| || || |  ||||||||||||| |  ||||||||| |||||||    
T  16925656 attacattgaattgtgttatttttttcaaaattttatcggtatcgacatgtccgtgtcagtgtcatgtccagtgcccgtgtc 16925575  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 267
Target Start/End: Original strand, 23531794 - 23531875
Alignment:
Q  186 aattacattgaattatgtcattttttcaaaattttatccgtgtcaatgtgtccgtgtcagtattgtgtccagtgtccgtgtc 267  Q
    |||||||||||||||||| || |||||||| | ||| | || |  | ||||| ||||| |||| ||||||||||||||||||    
T  23531794 aattacattgaattatgtgatattttcaaattattagcagtattgaagtgtcggtgtccgtatcgtgtccagtgtccgtgtc 23531875  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 23636054 - 23636099
Alignment:
Q  175 ccgacacatacaattacattgaattatgtcattttttcaaaatttt 220  Q
    |||||||||||||||||| |||||||||| ||||| ||||| ||||    
T  23636054 ccgacacatacaattacactgaattatgtaattttctcaaattttt 23636099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 244
Target Start/End: Original strand, 40686775 - 40686832
Alignment:
Q  187 attacattgaattatgtcattttttcaaaattttatccgtgtcaatgtgtccgtgtca 244  Q
    ||||||||||||||| ||||||| |||||||||||||  |||| | ||||| ||||||    
T  40686775 attacattgaattatatcattttatcaaaattttatcgatgtcgacgtgtcagtgtca 40686832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 219
Target Start/End: Original strand, 18946051 - 18946083
Alignment:
Q  187 attacattgaattatgtcattttttcaaaattt 219  Q
    ||||||||||||||||||||||| |||||||||    
T  18946051 attacattgaattatgtcattttctcaaaattt 18946083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 238
Target Start/End: Complemental strand, 19637827 - 19637759
Alignment:
Q  170 cgactccgacacatacaattacattgaattatgtcattttttcaaaattttatccgtgtcaatgtgtcc 238  Q
    |||| ||||||||||  |||||||||||| |||||||||| | ||| | ||||| ||||| ||||||||    
T  19637827 cgacaccgacacatatgattacattgaataatgtcattttcttaaattattatcggtgtcgatgtgtcc 19637759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 228
Target Start/End: Original strand, 22794084 - 22794136
Alignment:
Q  176 cgacacatacaattacattgaattatgtcattttttcaaaattttatccgtgt 228  Q
    |||||| || ||||||| || ||||||||||||||||||| | ||||||||||    
T  22794084 cgacacctataattacactgtattatgtcattttttcaaattattatccgtgt 22794136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 243
Target Start/End: Original strand, 18125 - 18181
Alignment:
Q  187 attacattgaattatgtcattttttcaaaattttatccgtgtcaatgtgtccgtgtc 243  Q
    ||||||||||||||||| ||||| ||||||||||||| ||||| | ||||| |||||    
T  18125 attacattgaattatgttattttctcaaaattttatcggtgtcgacgtgtcagtgtc 18181  T

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Target: scaffold0504 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 188 - 231
Target Start/End: Original strand, 8715 - 8758
Alignment:
Q  188 ttacattgaattatgtcattttttcaaaattttatccgtgtcaa 231  Q
    ||||||||||| |||||||||| |||||||||||||| ||||||    
T  8715 ttacattgaatcatgtcattttctcaaaattttatccatgtcaa 8758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 216
Target Start/End: Complemental strand, 101052 - 101013
Alignment:
Q  177 gacacatacaattacattgaattatgtcattttttcaaaa 216  Q
    |||||||| |||||||||||||||||||||||||| ||||    
T  101052 gacacatataattacattgaattatgtcattttttaaaaa 101013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 143
Target Start/End: Complemental strand, 16261 - 16215
Alignment:
Q  97 tgaagcacaaatactcatcgtattaggcgtgtcctggtgttggatac 143  Q
    ||||||||||||||| |||| ||||| ||||||| ||||||||||||    
T  16261 tgaagcacaaatactaatcggattagacgtgtcccggtgttggatac 16215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 243
Target Start/End: Complemental strand, 99956 - 99879
Alignment:
Q  166 gacacgactccgacacatacaattacattgaattatgtcattttttcaaaattttatccgtgtcaatgtgtccgtgtc 243  Q
    |||||||| || ||||||| |||||||||||||||||| ||||| | ||| | ||||| ||||| |  ||||||||||    
T  99956 gacacgacaccaacacatataattacattgaattatgttattttctaaaattattatcggtgtcgacatgtccgtgtc 99879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0314 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 223
Target Start/End: Complemental strand, 8990 - 8954
Alignment:
Q  187 attacattgaattatgtcattttttcaaaattttatc 223  Q
    ||||| ||||||||||||||||| |||||||||||||    
T  8990 attacgttgaattatgtcattttctcaaaattttatc 8954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 211
Target Start/End: Complemental strand, 23486 - 23438
Alignment:
Q  163 tccgacacgactccgacacatacaattacattgaattatgtcatttttt 211  Q
    ||||||||||| ||||||| || ||||||| |||||||||| |||||||    
T  23486 tccgacacgacaccgacacttataattacactgaattatgtgatttttt 23438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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