View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11472_low_26 (Length: 272)
Name: NF11472_low_26
Description: NF11472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11472_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 12 - 210
Target Start/End: Complemental strand, 225554 - 225346
Alignment:
| Q |
12 |
agagaaccaattgtaacgaccagcgaatgaagagtcgattaaaggcaaaagagagtcttgtgtaattgttggaggcaagtgccgaatcaccaccttcgta |
111 |
Q |
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| T |
225554 |
agagaaccaattgtaacgaccagcgaaggaagagtcgattaaaggcaaaagagagtcttgtgtaattgttggaggcaagtgccgaatcaccaccttcgta |
225455 |
T |
|
| Q |
112 |
cgatccgacatcacaaaattcaattc----------aattatcggattctatcacatctccgctgcttctcaattttgtttgaggaagaggaggatatca |
201 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
225454 |
cgatccgacatcacaaaattcaattcaattcaattcaattatcggattctatcacatctccgctgcttctcaattttgtttgaggaagaggatgatatca |
225355 |
T |
|
| Q |
202 |
atcaattca |
210 |
Q |
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||||||||| |
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| T |
225354 |
atcaattca |
225346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 18 - 177
Target Start/End: Original strand, 17864076 - 17864241
Alignment:
| Q |
18 |
ccaattgtaacgaccagcgaatgaagagtcgattaaaggcaaaagagagtcttgtgtaattgttggaggcaagtgccgaatcaccaccttcgtacgatcc |
117 |
Q |
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|||||||||||||| |||||| |||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
17864076 |
ccaattgtaacgactagcgaaggaagagtcaattaagggcataagagagtcttgtgtaattgttggaggcaagtgccgaatcaccaccttcgtactatcc |
17864175 |
T |
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| Q |
118 |
gacatcac------aaaattcaattcaattatcggattctatcacatctccgctgcttctcaattt |
177 |
Q |
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| T |
17864176 |
gacatcaccctacttcgattcaattcaattattggattggatcacatctccgctgcttctcaattt |
17864241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 34 - 177
Target Start/End: Original strand, 52189747 - 52189896
Alignment:
| Q |
34 |
gcgaatgaagagtcgattaaaggcaaaagagagtcttgtgtaattgttggaggcaagtgccgaatcaccaccttcgtacgatccgacatcac------aa |
127 |
Q |
| |
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||||| |||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
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| T |
52189747 |
gcgaaggaagagtcaattaagggcataagagagtcttgtgtaattgttggaggcaagtgccgaatcaccaccttcgtactatcccacatcaccctacttc |
52189846 |
T |
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| Q |
128 |
aattcaattcaattatcggattctatcacatctccgctgcttctcaattt |
177 |
Q |
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||||||||||||||| ||||| |||||||||||||||||||||||||| |
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| T |
52189847 |
gattcaattcaattattggattggatcacatctccgctgcttctcaattt |
52189896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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