View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11472_low_28 (Length: 250)

Name: NF11472_low_28
Description: NF11472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11472_low_28
NF11472_low_28
[»] chr1 (4 HSPs)
chr1 (96-233)||(26496050-26496184)
chr1 (1-43)||(16960945-16960987)
chr1 (1-40)||(25868922-25868961)
chr1 (148-192)||(16960828-16960872)
[»] chr8 (1 HSPs)
chr8 (1-70)||(38016354-38016427)
[»] chr6 (4 HSPs)
chr6 (148-204)||(4092060-4092115)
chr6 (134-204)||(4435824-4435893)
chr6 (1-45)||(4435724-4435768)
chr6 (1-40)||(4091945-4091984)
[»] chr5 (1 HSPs)
chr5 (134-204)||(37719265-37719334)
[»] chr3 (2 HSPs)
chr3 (134-204)||(46594945-46595014)
chr3 (1-46)||(46595069-46595114)
[»] chr4 (2 HSPs)
chr4 (1-58)||(47521207-47521264)
chr4 (148-204)||(47521322-47521377)
[»] chr2 (1 HSPs)
chr2 (58-105)||(17950235-17950282)


Alignment Details
Target: chr1 (Bit Score: 99; Significance: 6e-49; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 96 - 233
Target Start/End: Original strand, 26496050 - 26496184
Alignment:
Q  96 aagctatgtattttgacataaacacttcaagaatggtggatgcatttgttgttgtagaatcgcttttgttttaacaggttgtatataactgatttttaga 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |||| ||||||||    
T  26496050 aagctatgtattttgacataaacacttcaagaatggtggatgcatttgttgctgtagaatctcttttgttttaacaggttgtatatcactg-tttttaga 26496148  T
Q  196 atttctttagttgcaacctaccaatatgtgactctttt 233  Q
    |||| |||||||| |||||||||  |||||||||||||    
T  26496149 atttgtttagttgaaacctacca--atgtgactctttt 26496184  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 16960987 - 16960945
Alignment:
Q  1 aaacaatggtgattttgagaataaaaagtggtaaaaagaatgg 43  Q
    ||||||||||  |||||||||||||||||||||||||||||||    
T  16960987 aaacaatggtatttttgagaataaaaagtggtaaaaagaatgg 16960945  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 25868922 - 25868961
Alignment:
Q  1 aaacaatggtgattttgagaataaaaagtggtaaaaagaa 40  Q
    ||||||||||  ||||||||||||||||||||||||||||    
T  25868922 aaacaatggtatttttgagaataaaaagtggtaaaaagaa 25868961  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 192
Target Start/End: Complemental strand, 16960872 - 16960828
Alignment:
Q  148 tgtagaatcgcttttgttttaacaggttgtatataactgattttt 192  Q
    ||||||||| |||||||||||||||||| ||||| |||| |||||    
T  16960872 tgtagaatctcttttgttttaacaggttttatatcactgtttttt 16960828  T

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Target: chr8 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 38016427 - 38016354
Alignment:
Q  1 aaacaatggtgattttgagaataaaaagtggtaaaaagaa----tggagggttttgtttaatcaaaagaaattg 70  Q
    ||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||    
T  38016427 aaacaatggtgattttgagaataaaaagtggtaaaaagaatggatggagggttttgtttaatcaaaagaaattg 38016354  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 148 - 204
Target Start/End: Original strand, 4092060 - 4092115
Alignment:
Q  148 tgtagaatcgcttttgttttaacaggttgtatataactgatttttagaatttcttta 204  Q
    ||||||||| |||||||||||||||||||||||| |||| |||||||||||| ||||    
T  4092060 tgtagaatctcttttgttttaacaggttgtatatcactg-tttttagaatttgttta 4092115  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 134 - 204
Target Start/End: Original strand, 4435824 - 4435893
Alignment:
Q  134 gatgcatttgttgttgtagaatcgcttttgttttaacaggttgtatataactgatttttagaatttcttta 204  Q
    |||||||||||   ||||||||| |||||||||||||||||||||||| |||| |||||| ||||| ||||    
T  4435824 gatgcatttgtcaatgtagaatctcttttgttttaacaggttgtatatcactg-tttttataatttgttta 4435893  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 4435724 - 4435768
Alignment:
Q  1 aaacaatggtgattttgagaataaaaagtggtaaaaagaatggag 45  Q
    ||||||||||  |||||||||||||||||||||||||||| ||||    
T  4435724 aaacaatggtatttttgagaataaaaagtggtaaaaagaacggag 4435768  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 4091945 - 4091984
Alignment:
Q  1 aaacaatggtgattttgagaataaaaagtggtaaaaagaa 40  Q
    ||||||||||  ||||||||||||||||||||||||||||    
T  4091945 aaacaatggtatttttgagaataaaaagtggtaaaaagaa 4091984  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 134 - 204
Target Start/End: Complemental strand, 37719334 - 37719265
Alignment:
Q  134 gatgcatttgttgttgtagaatcgcttttgttttaacaggttgtatataactgatttttagaatttcttta 204  Q
    |||||||||||   ||||||||| |||||||||||||||||||||||| |||| |||||| ||||| ||||    
T  37719334 gatgcatttgtcaatgtagaatctcttttgttttaacaggttgtatatcactg-tttttataatttgttta 37719265  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 134 - 204
Target Start/End: Complemental strand, 46595014 - 46594945
Alignment:
Q  134 gatgcatttgttgttgtagaatcgcttttgttttaacaggttgtatataactgatttttagaatttcttta 204  Q
    |||||||||||   ||||||||| |||||||||||||||||||||||| |||| |||||| ||||| ||||    
T  46595014 gatgcatttgtcaatgtagaatctcttttgttttaacaggttgtatatcactg-tttttataatttgttta 46594945  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 46595114 - 46595069
Alignment:
Q  1 aaacaatggtgattttgagaataaaaagtggtaaaaagaatggagg 46  Q
    ||||||||||  |||||||||||||||||||||||||||| |||||    
T  46595114 aaacaatggtatttttgagaataaaaagtggtaaaaagaacggagg 46595069  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 47521207 - 47521264
Alignment:
Q  1 aaacaatggtgattttgagaataaaaagtggtaaaaagaatggagggttttgtttaat 58  Q
    ||||||||||  |||||||||||||||||||||||||||| ||  |||| ||||||||    
T  47521207 aaacaatggtatttttgagaataaaaagtggtaaaaagaacggcaggttctgtttaat 47521264  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 204
Target Start/End: Original strand, 47521322 - 47521377
Alignment:
Q  148 tgtagaatcgcttttgttttaacaggttgtatataactgatttttagaatttcttta 204  Q
    ||||||||| ||||||||| |||||||||||||| | || |||||||||||| ||||    
T  47521322 tgtagaatctcttttgtttaaacaggttgtatatcattg-tttttagaatttgttta 47521377  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 105
Target Start/End: Original strand, 17950235 - 17950282
Alignment:
Q  58 tcaaaagaaattgctaaagaatgttgaaattatgaataaagctatgta 105  Q
    ||||||||||||| | ||| ||||||||| ||||||||||||||||||    
T  17950235 tcaaaagaaattgttgaaggatgttgaaactatgaataaagctatgta 17950282  T

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