View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11472_low_3 (Length: 493)
Name: NF11472_low_3
Description: NF11472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11472_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 9 - 301
Target Start/End: Original strand, 18251867 - 18252159
Alignment:
| Q |
9 |
gagaagaaataacaagagtggtagagaaaagacatggatatataaaataaccaagcaattagatacaaatggttaatgagcatcgaggagaaattgttca |
108 |
Q |
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| T |
18251867 |
gagaagaaataacaagagtggtagagaaaagacgtggatatataaaataaccaaacaattagatacaagtggttaataagtatcgaggagaaattgttca |
18251966 |
T |
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| Q |
109 |
agagaaactgaatttgctttccgaccaaactccaaatcaccggtgtcatttcctagtgagaaggggagggtaaacactagctacaaactatatagtatac |
208 |
Q |
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| T |
18251967 |
agagaaactgagtttgctttctgaccaaactccaaatcaccggtgtcattttctagtgagaaggagagggtaaacactagctacaaactatatagcatac |
18252066 |
T |
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| Q |
209 |
aaagtagaatctttatttagatacttttccaataacatgtcttaatttagtatttgttgtgaaaaagacaatgtaaccatctaagcctccatt |
301 |
Q |
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| T |
18252067 |
aaagtagaatctttatttagatacttttccaataacatgtctcaatttagtatttgttgtgaaaaagacaatgtaaccatctaagccttcatt |
18252159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 310 - 477
Target Start/End: Complemental strand, 18257105 - 18256938
Alignment:
| Q |
310 |
gcatttgttagaatgaccacgatcatcattactcattacatgcatttgtcaatgactattgaatgatcaattcaaattattcaaaaggaatatcaaaaac |
409 |
Q |
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| T |
18257105 |
gcatttgttagaatgaccacgatcatcattactcattacatgcatttgtcaatgactattgaatgatcaattcaaattattcagaaagaatattaaaaat |
18257006 |
T |
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| Q |
410 |
atatatttccactattccacactctatatataatagaaccaatttgaccacaaatacacacaaaatat |
477 |
Q |
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| T |
18257005 |
atatatttccactattccactctctatatataatagaaccaatttgaccacaaatacacacacaatat |
18256938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 310 - 477
Target Start/End: Original strand, 18252468 - 18252630
Alignment:
| Q |
310 |
gcatttgttagaatgaccacgatcatcattactcattacatgcatttgtcaatgactattgaatgatcaattcaaattattcaaaaggaatatcaaaaac |
409 |
Q |
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| T |
18252468 |
gcatttgttagaatgaccacaatcatcattactcattacatgcatttgtcaatgac-----aatgatcaattcaaattattcaaaaggaatataaaaaac |
18252562 |
T |
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| Q |
410 |
atatatttccactattccacactctatatataatagaaccaatttgaccacaaatacacacaaaatat |
477 |
Q |
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| T |
18252563 |
atatatttccactattccactctctatatataatagaaccaatttgaccacaaatacacacacaatat |
18252630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 423 - 474
Target Start/End: Original strand, 18245475 - 18245526
Alignment:
| Q |
423 |
attccacactctatatataatagaaccaatttgaccacaaatacacacaaaa |
474 |
Q |
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| T |
18245475 |
attccactctctatatatagtagaaccaaattgaccacaaaaacacacaaaa |
18245526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 225 - 292
Target Start/End: Original strand, 31221543 - 31221611
Alignment:
| Q |
225 |
ttagatacttttccaataacatgtcttaatttagtattt-gttgtgaaaaagacaatgtaaccatctaa |
292 |
Q |
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| T |
31221543 |
ttagatacttttccaatagcatgtctcattctagtattttgttctgaaaaagacaatctaaccatctaa |
31221611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 217 - 292
Target Start/End: Original strand, 31246112 - 31246188
Alignment:
| Q |
217 |
atctttatttagatacttttccaataacatgtcttaatttagta-tttgttgtgaaaaagacaatgtaaccatctaa |
292 |
Q |
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| T |
31246112 |
atctttatttagatgcttttgcagtaacatatctcaatttagtattttgttacgtaaaagacaatgtagccacctaa |
31246188 |
T |
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