View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11472_low_30 (Length: 243)

Name: NF11472_low_30
Description: NF11472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11472_low_30
NF11472_low_30
[»] chr4 (10 HSPs)
chr4 (2-233)||(23700449-23700680)
chr4 (34-128)||(23697334-23697428)
chr4 (174-204)||(24343518-24343548)
chr4 (131-169)||(28000672-28000710)
chr4 (175-216)||(4672104-4672145)
chr4 (129-169)||(2361915-2361955)
chr4 (174-214)||(11596370-11596410)
chr4 (129-169)||(25950472-25950512)
chr4 (129-169)||(40784032-40784072)
chr4 (129-169)||(53381530-53381570)
[»] chr5 (4 HSPs)
chr5 (174-209)||(6326315-6326350)
chr5 (128-164)||(2419951-2419987)
chr5 (174-209)||(27932241-27932276)
chr5 (174-208)||(21194223-21194257)
[»] chr6 (7 HSPs)
chr6 (129-169)||(8776908-8776948)
chr6 (174-204)||(7569186-7569216)
chr6 (174-216)||(7977848-7977890)
chr6 (174-216)||(12696323-12696365)
chr6 (174-208)||(13360390-13360424)
chr6 (125-162)||(2545531-2545568)
chr6 (129-169)||(34595213-34595253)
[»] scaffold0004 (1 HSPs)
scaffold0004 (174-209)||(92813-92848)
[»] chr8 (6 HSPs)
chr8 (129-164)||(30067968-30068003)
chr8 (174-204)||(7658474-7658504)
chr8 (129-167)||(11927015-11927053)
chr8 (174-204)||(13203652-13203682)
chr8 (129-169)||(11944755-11944795)
chr8 (129-169)||(29510233-29510273)
[»] chr7 (8 HSPs)
chr7 (174-209)||(21880158-21880193)
chr7 (174-209)||(30813818-30813853)
chr7 (174-204)||(27945052-27945082)
chr7 (174-207)||(18233616-18233649)
chr7 (174-207)||(23930227-23930260)
chr7 (128-169)||(43027403-43027444)
chr7 (129-169)||(17852079-17852119)
chr7 (176-204)||(24289831-24289859)
[»] chr2 (4 HSPs)
chr2 (174-216)||(21374717-21374759)
chr2 (174-204)||(23921264-23921294)
chr2 (174-216)||(30717548-30717590)
chr2 (129-169)||(18840953-18840993)
[»] chr1 (4 HSPs)
chr1 (174-216)||(12443478-12443520)
chr1 (174-203)||(23636067-23636096)
chr1 (129-169)||(18471374-18471414)
chr1 (174-210)||(31015048-31015084)
[»] scaffold0154 (1 HSPs)
scaffold0154 (128-161)||(13511-13544)
[»] chr3 (1 HSPs)
chr3 (129-170)||(23657817-23657858)
[»] scaffold0049 (1 HSPs)
scaffold0049 (177-209)||(63779-63811)


Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 2 - 233
Target Start/End: Complemental strand, 23700680 - 23700449
Alignment:
Q  2 tttattattctgccttgtaatcaaacttatatgcaggtgtggcaatcaattttgctatggctgtggttctccttggaataatcagtcccattatgcatgt 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23700680 tttattattctgccttgtaatcaaacttatatgcaggtgtggcaatcaattttgctatggctgtggttctccttggaataatcagtcccattatgcatgt 23700581  T
Q  102 ccaactcaataaaaattgcatggcgagctatgaagtacggacactcatcggattaggtgtgtctcggtagttttacactgaattatgtaattttctcaaa 201  Q
    |||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  23700580 ccaactcaatgaaaattgcatggggagctatgaagtacgaacactcatcggattaggtgtgtctcggtagttttacactgaattatgtaattttctcaat 23700481  T
Q  202 ttactagctttgtcgtcagtgccaatgttcat 233  Q
    |||||||| ||||||||||||||| |||||||    
T  23700480 ttactagcgttgtcgtcagtgccagtgttcat 23700449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 128
Target Start/End: Original strand, 23697334 - 23697428
Alignment:
Q  34 gcaggtgtggcaatcaattttgctatggctgtggttctccttggaataatcagtcccattatgcatgtccaactcaataaaaattgcatggcgag 128  Q
    |||||||||| ||||||||||||||||| ||||| ||  ||||||||| | | |||||||||   ||| |||||  ||| |||||||||| ||||    
T  23697334 gcaggtgtggtaatcaattttgctatggatgtggatccacttggaatactgactcccattataagtgtgcaactggatagaaattgcatgacgag 23697428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 204
Target Start/End: Complemental strand, 24343548 - 24343518
Alignment:
Q  174 ttacactgaattatgtaattttctcaaatta 204  Q
    |||||||||||||||||||||||||||||||    
T  24343548 ttacactgaattatgtaattttctcaaatta 24343518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 169
Target Start/End: Original strand, 28000672 - 28000710
Alignment:
Q  131 atgaagtacggacactcatcggattaggtgtgtctcggt 169  Q
    |||||| ||||||||||||| ||||||||||||||||||    
T  28000672 atgaagcacggacactcatcagattaggtgtgtctcggt 28000710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 216
Target Start/End: Original strand, 4672104 - 4672145
Alignment:
Q  175 tacactgaattatgtaattttctcaaattactagctttgtcg 216  Q
    |||||||||||||||||||||| ||||||| ||||| |||||    
T  4672104 tacactgaattatgtaattttcccaaattattagctgtgtcg 4672145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 169
Target Start/End: Original strand, 2361915 - 2361955
Alignment:
Q  129 ctatgaagtacggacactcatcggattaggtgtgtctcggt 169  Q
    |||||||| |||||||||| || ||||||||||||||||||    
T  2361915 ctatgaagcacggacactcgtcagattaggtgtgtctcggt 2361955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 214
Target Start/End: Original strand, 11596370 - 11596410
Alignment:
Q  174 ttacactgaattatgtaattttctcaaattactagctttgt 214  Q
    |||||||||||||||| ||||| |||||||| |||||||||    
T  11596370 ttacactgaattatgtgattttttcaaattattagctttgt 11596410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 169
Target Start/End: Original strand, 25950472 - 25950512
Alignment:
Q  129 ctatgaagtacggacactcatcggattaggtgtgtctcggt 169  Q
    |||||||| | |||||||| |||||||||||||||||||||    
T  25950472 ctatgaagcatggacactcctcggattaggtgtgtctcggt 25950512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 169
Target Start/End: Complemental strand, 40784072 - 40784032
Alignment:
Q  129 ctatgaagtacggacactcatcggattaggtgtgtctcggt 169  Q
    |||||||| |||||||||| |||||||||||||||| ||||    
T  40784072 ctatgaagcacggacactcctcggattaggtgtgtcccggt 40784032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 169
Target Start/End: Original strand, 53381530 - 53381570
Alignment:
Q  129 ctatgaagtacggacactcatcggattaggtgtgtctcggt 169  Q
    |||||||| |||||||||| |||||||||||||||| ||||    
T  53381530 ctatgaagcacggacactcctcggattaggtgtgtcccggt 53381570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 209
Target Start/End: Original strand, 6326315 - 6326350
Alignment:
Q  174 ttacactgaattatgtaattttctcaaattactagc 209  Q
    ||||||||||||||||||||||||||||||||||||    
T  6326315 ttacactgaattatgtaattttctcaaattactagc 6326350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 164
Target Start/End: Complemental strand, 2419987 - 2419951
Alignment:
Q  128 gctatgaagtacggacactcatcggattaggtgtgtc 164  Q
    ||||||||| |||||||||||||||||||||||||||    
T  2419987 gctatgaagcacggacactcatcggattaggtgtgtc 2419951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 209
Target Start/End: Complemental strand, 27932276 - 27932241
Alignment:
Q  174 ttacactgaattatgtaattttctcaaattactagc 209  Q
    ||||||||||||||||||||||||||||||| ||||    
T  27932276 ttacactgaattatgtaattttctcaaattattagc 27932241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 208
Target Start/End: Original strand, 21194223 - 21194257
Alignment:
Q  174 ttacactgaattatgtaattttctcaaattactag 208  Q
    |||||||||||||||| ||||||||||||||||||    
T  21194223 ttacactgaattatgtgattttctcaaattactag 21194257  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 169
Target Start/End: Original strand, 8776908 - 8776948
Alignment:
Q  129 ctatgaagtacggacactcatcggattaggtgtgtctcggt 169  Q
    |||||||| |||||||||| |||||||||||||||||||||    
T  8776908 ctatgaagcacggacactcctcggattaggtgtgtctcggt 8776948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 204
Target Start/End: Original strand, 7569186 - 7569216
Alignment:
Q  174 ttacactgaattatgtaattttctcaaatta 204  Q
    |||||||||||||||||||||||||||||||    
T  7569186 ttacactgaattatgtaattttctcaaatta 7569216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 216
Target Start/End: Original strand, 7977848 - 7977890
Alignment:
Q  174 ttacactgaattatgtaattttctcaaattactagctttgtcg 216  Q
    |||||||||||||||||||||| |||||||| ||||| |||||    
T  7977848 ttacactgaattatgtaattttttcaaattattagctgtgtcg 7977890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 216
Target Start/End: Complemental strand, 12696365 - 12696323
Alignment:
Q  174 ttacactgaattatgtaattttctcaaattactagctttgtcg 216  Q
    |||||||||||||||||||||| |||||||| ||||| |||||    
T  12696365 ttacactgaattatgtaattttttcaaattattagctgtgtcg 12696323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 208
Target Start/End: Original strand, 13360390 - 13360424
Alignment:
Q  174 ttacactgaattatgtaattttctcaaattactag 208  Q
    |||||||||||||||| ||||||||||||||||||    
T  13360390 ttacactgaattatgtgattttctcaaattactag 13360424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 162
Target Start/End: Complemental strand, 2545568 - 2545531
Alignment:
Q  125 cgagctatgaagtacggacactcatcggattaggtgtg 162  Q
    ||||||||||| ||||||||||||| ||||||||||||    
T  2545568 cgagctatgaaatacggacactcattggattaggtgtg 2545531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 169
Target Start/End: Complemental strand, 34595253 - 34595213
Alignment:
Q  129 ctatgaagtacggacactcatcggattaggtgtgtctcggt 169  Q
    |||||||| |||||||||| |||||||||||||||| ||||    
T  34595253 ctatgaagcacggacactcctcggattaggtgtgtcccggt 34595213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 209
Target Start/End: Complemental strand, 92848 - 92813
Alignment:
Q  174 ttacactgaattatgtaattttctcaaattactagc 209  Q
    ||||||||||||||||||||||||||||||| ||||    
T  92848 ttacactgaattatgtaattttctcaaattattagc 92813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 164
Target Start/End: Original strand, 30067968 - 30068003
Alignment:
Q  129 ctatgaagtacggacactcatcggattaggtgtgtc 164  Q
    |||||||| |||||||||||||||||||||||||||    
T  30067968 ctatgaagcacggacactcatcggattaggtgtgtc 30068003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 204
Target Start/End: Complemental strand, 7658504 - 7658474
Alignment:
Q  174 ttacactgaattatgtaattttctcaaatta 204  Q
    |||||||||||||||||||||||||||||||    
T  7658504 ttacactgaattatgtaattttctcaaatta 7658474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 167
Target Start/End: Original strand, 11927015 - 11927053
Alignment:
Q  129 ctatgaagtacggacactcatcggattaggtgtgtctcg 167  Q
    |||||||| ||||||||||||||||||||| ||||||||    
T  11927015 ctatgaagcacggacactcatcggattaggcgtgtctcg 11927053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 204
Target Start/End: Complemental strand, 13203682 - 13203652
Alignment:
Q  174 ttacactgaattatgtaattttctcaaatta 204  Q
    |||||||||||||||||||||||||||||||    
T  13203682 ttacactgaattatgtaattttctcaaatta 13203652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 169
Target Start/End: Complemental strand, 11944795 - 11944755
Alignment:
Q  129 ctatgaagtacggacactcatcggattaggtgtgtctcggt 169  Q
    |||||||| ||| ||||||||||||||||| ||||||||||    
T  11944795 ctatgaagcacgaacactcatcggattaggcgtgtctcggt 11944755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 169
Target Start/End: Original strand, 29510233 - 29510273
Alignment:
Q  129 ctatgaagtacggacactcatcggattaggtgtgtctcggt 169  Q
    |||||||| |||||||||| |||||||||||||||| ||||    
T  29510233 ctatgaagcacggacactcctcggattaggtgtgtcccggt 29510273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 209
Target Start/End: Complemental strand, 21880193 - 21880158
Alignment:
Q  174 ttacactgaattatgtaattttctcaaattactagc 209  Q
    ||||||||||||||||||||||||||||||| ||||    
T  21880193 ttacactgaattatgtaattttctcaaattattagc 21880158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 209
Target Start/End: Complemental strand, 30813853 - 30813818
Alignment:
Q  174 ttacactgaattatgtaattttctcaaattactagc 209  Q
    ||||||||||||||||||||||||||||||| ||||    
T  30813853 ttacactgaattatgtaattttctcaaattattagc 30813818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 204
Target Start/End: Complemental strand, 27945082 - 27945052
Alignment:
Q  174 ttacactgaattatgtaattttctcaaatta 204  Q
    |||||||||||||||||||||||||||||||    
T  27945082 ttacactgaattatgtaattttctcaaatta 27945052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 207
Target Start/End: Original strand, 18233616 - 18233649
Alignment:
Q  174 ttacactgaattatgtaattttctcaaattacta 207  Q
    |||||||||||||||| |||||||||||||||||    
T  18233616 ttacactgaattatgtcattttctcaaattacta 18233649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 207
Target Start/End: Complemental strand, 23930260 - 23930227
Alignment:
Q  174 ttacactgaattatgtaattttctcaaattacta 207  Q
    |||||||||||||||| |||||||||||||||||    
T  23930260 ttacactgaattatgtcattttctcaaattacta 23930227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 169
Target Start/End: Original strand, 43027403 - 43027444
Alignment:
Q  128 gctatgaagtacggacactcatcggattaggtgtgtctcggt 169  Q
    ||||||||| ||||||||||||||||||||| ||||| ||||    
T  43027403 gctatgaagcacggacactcatcggattaggcgtgtcccggt 43027444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 169
Target Start/End: Complemental strand, 17852119 - 17852079
Alignment:
Q  129 ctatgaagtacggacactcatcggattaggtgtgtctcggt 169  Q
    |||||||| |||||||||| ||| |||||||||||||||||    
T  17852119 ctatgaagcacggacactcctcgaattaggtgtgtctcggt 17852079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 204
Target Start/End: Complemental strand, 24289859 - 24289831
Alignment:
Q  176 acactgaattatgtaattttctcaaatta 204  Q
    |||||||||||||||||||||||||||||    
T  24289859 acactgaattatgtaattttctcaaatta 24289831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 216
Target Start/End: Original strand, 21374717 - 21374759
Alignment:
Q  174 ttacactgaattatgtaattttctcaaattactagctttgtcg 216  Q
    |||||||||||||||||||||| |||||||| ||||| |||||    
T  21374717 ttacactgaattatgtaattttttcaaattattagctgtgtcg 21374759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 204
Target Start/End: Complemental strand, 23921294 - 23921264
Alignment:
Q  174 ttacactgaattatgtaattttctcaaatta 204  Q
    |||||||||||||||||||||||||||||||    
T  23921294 ttacactgaattatgtaattttctcaaatta 23921264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 216
Target Start/End: Original strand, 30717548 - 30717590
Alignment:
Q  174 ttacactgaattatgtaattttctcaaattactagctttgtcg 216  Q
    |||||||||||||||| ||||| |||||||| |||||||||||    
T  30717548 ttacactgaattatgtgattttttcaaattattagctttgtcg 30717590  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 169
Target Start/End: Original strand, 18840953 - 18840993
Alignment:
Q  129 ctatgaagtacggacactcatcggattaggtgtgtctcggt 169  Q
    |||||||| |||||||||| |||||||||||||||| ||||    
T  18840953 ctatgaagcacggacactcctcggattaggtgtgtcccggt 18840993  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 216
Target Start/End: Original strand, 12443478 - 12443520
Alignment:
Q  174 ttacactgaattatgtaattttctcaaattactagctttgtcg 216  Q
    |||||||||||||||| |||||||||||||| ||||| |||||    
T  12443478 ttacactgaattatgtgattttctcaaattattagctgtgtcg 12443520  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 203
Target Start/End: Original strand, 23636067 - 23636096
Alignment:
Q  174 ttacactgaattatgtaattttctcaaatt 203  Q
    ||||||||||||||||||||||||||||||    
T  23636067 ttacactgaattatgtaattttctcaaatt 23636096  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 169
Target Start/End: Complemental strand, 18471414 - 18471374
Alignment:
Q  129 ctatgaagtacggacactcatcggattaggtgtgtctcggt 169  Q
    ||||||||||||||||||| ||| ||||||||||| |||||    
T  18471414 ctatgaagtacggacactcctcgaattaggtgtgtttcggt 18471374  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 31015084 - 31015048
Alignment:
Q  174 ttacactgaattatgtaattttctcaaattactagct 210  Q
    |||||||||||||||| |||||||||||||| |||||    
T  31015084 ttacactgaattatgtgattttctcaaattattagct 31015048  T

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Target: scaffold0154 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 161
Target Start/End: Complemental strand, 13544 - 13511
Alignment:
Q  128 gctatgaagtacggacactcatcggattaggtgt 161  Q
    |||||||||||||||||||| |||||||||||||    
T  13544 gctatgaagtacggacactcctcggattaggtgt 13511  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 170
Target Start/End: Complemental strand, 23657858 - 23657817
Alignment:
Q  129 ctatgaagtacggacactcatcggattaggtgtgtctcggta 170  Q
    ||||||||||||||||||  |||||||||||||||| |||||    
T  23657858 ctatgaagtacggacacttttcggattaggtgtgtcccggta 23657817  T

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Target: scaffold0049 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 209
Target Start/End: Complemental strand, 63811 - 63779
Alignment:
Q  177 cactgaattatgtaattttctcaaattactagc 209  Q
    |||||||||||||||||||||||||||| ||||    
T  63811 cactgaattatgtaattttctcaaattattagc 63779  T

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