View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11472_low_32 (Length: 241)
Name: NF11472_low_32
Description: NF11472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11472_low_32 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 38214034 - 38213812
Alignment:
| Q |
1 |
taccgcaatttcaaagctactgagttatcttctgtctcttccacttccttctctgattctgcattgcaaagcaatgagcttgatgcttatggtagaagaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38214034 |
taccgcaatttcaaagctactgagttatcttctgtctcttccacttccttctctgattctgcattgcaaagcaatgagcttgatgcttatggtagaagaa |
38213935 |
T |
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| Q |
101 |
gattgagatgggttcagaaatactttatgatctataattactgcaacgatcttaagcgattcccagaaggtattcctgctgagtgtaagcgtccaaggtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38213934 |
gattgagatgggttcagaaatactttatgatctataattactgcaacgatcttaagcgattcccagaaggtattcctgctgagtgtaagcgtccaaggtt |
38213835 |
T |
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| Q |
201 |
ctgatgagagatcaatgatgaag |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
38213834 |
ctgatgagagatcaatgatgaag |
38213812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 38218253 - 38218031
Alignment:
| Q |
1 |
taccgcaatttcaaagctactgagttatcttctgtctcttccacttccttctctgattctgcattgcaaagcaatgagcttgatgcttatggtagaagaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38218253 |
taccgcaatttcaaagctactgagttatcttctgtctcttccacttccttctctgattctgcattgcaaagcaatgagcttgatgcttatggtagaagaa |
38218154 |
T |
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| Q |
101 |
gattgagatgggttcagaaatactttatgatctataattactgcaacgatcttaagcgattcccagaaggtattcctgctgagtgtaagcgtccaaggtt |
200 |
Q |
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| T |
38218153 |
gattgagatgggttcagaaatactttatgatctataattactgcaacgatcttaagcgattcccagaaggtattcctgctgagtgtaagcgtccaaggtt |
38218054 |
T |
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| Q |
201 |
ctgatgagagatcaatgatgaag |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
38218053 |
ctgatgagagatcaatgatgaag |
38218031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 42991471 - 42991666
Alignment:
| Q |
1 |
taccgcaatttcaaagctactgagttatcttctgtctcttccacttccttctctgattctgcattgcaaagcaatgagcttgatgcttatggtagaagaa |
100 |
Q |
| |
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||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |
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| T |
42991471 |
taccgcaatttcaaagctactgaattatc--ctgtctcttccacttccttctctgattctgcattgcagagcaacgagcttgatgcttatggtagaagaa |
42991568 |
T |
|
| Q |
101 |
gattgagatgggttcagaaatactttatgatctataattactgcaacgatcttaagcgattcccagaaggtattcctgctgagtgtaagcgtccaagg |
198 |
Q |
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||||||||||||||||||| || || ||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||| ||||| |
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| T |
42991569 |
gattgagatgggttcagaagtatttcatgatatataattactgcaacgatcttaagcgatttccacaaggtattcctgctgagtgtaggcgttcaagg |
42991666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 52 - 187
Target Start/End: Original strand, 35018213 - 35018348
Alignment:
| Q |
52 |
tctgattctgcattgcaaagcaatgagcttgatgcttatggtagaagaagattgagatgggttcagaaatactttatgatctataattactgcaacgatc |
151 |
Q |
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|||||| ||| || ||||| |||||||||||||||||||||||||||||||||||||||||||| || || || ||||| ||||| || || || |||| |
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| T |
35018213 |
tctgatgctgaatggcaaataaatgagcttgatgcttatggtagaagaagattgagatgggttcaaaagtatttcatgatttataactattgtaatgatc |
35018312 |
T |
|
| Q |
152 |
ttaagcgattcccagaaggtattcctgctgagtgta |
187 |
Q |
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|||||||||||||| ||||| |||||| |||||||| |
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| T |
35018313 |
ttaagcgattcccacaaggtgttcctgttgagtgta |
35018348 |
T |
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