View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11472_low_33 (Length: 239)

Name: NF11472_low_33
Description: NF11472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11472_low_33
NF11472_low_33
[»] chr7 (45 HSPs)
chr7 (33-232)||(2297421-2297620)
chr7 (4-88)||(2297326-2297410)
chr7 (9-88)||(46648340-46648419)
chr7 (17-89)||(8571376-8571448)
chr7 (17-88)||(2360444-2360515)
chr7 (1-88)||(8571440-8571527)
chr7 (1-88)||(10422866-10422953)
chr7 (1-88)||(2360507-2360594)
chr7 (17-88)||(10422803-10422874)
chr7 (1-88)||(12171237-12171324)
chr7 (18-89)||(26824993-26825064)
chr7 (23-81)||(10981838-10981896)
chr7 (24-88)||(6585991-6586055)
chr7 (17-81)||(12171316-12171380)
chr7 (1-88)||(8561168-8561255)
chr7 (1-88)||(8595205-8595292)
chr7 (17-88)||(16777887-16777958)
chr7 (23-88)||(28285469-28285534)
chr7 (24-88)||(26824901-26824965)
chr7 (32-88)||(46648716-46648772)
chr7 (17-88)||(8595142-8595213)
chr7 (1-88)||(23797406-23797493)
chr7 (17-83)||(43813125-43813191)
chr7 (17-77)||(8561116-8561176)
chr7 (17-88)||(23797343-23797414)
chr7 (1-88)||(25768614-25768701)
chr7 (1-87)||(21387572-21387658)
chr7 (23-88)||(1706828-1706893)
chr7 (8-88)||(38238778-38238859)
chr7 (1-49)||(16777950-16777998)
chr7 (17-77)||(21099317-21099377)
chr7 (24-88)||(41404010-41404074)
chr7 (31-82)||(11602769-11602820)
chr7 (23-74)||(37101704-37101755)
chr7 (23-89)||(10095713-10095779)
chr7 (23-81)||(46944017-46944075)
chr7 (35-76)||(6586061-6586102)
chr7 (23-88)||(25079202-25079267)
chr7 (22-86)||(7701185-7701249)
chr7 (17-81)||(8169170-8169234)
chr7 (23-83)||(22281884-22281944)
chr7 (8-88)||(24936598-24936678)
chr7 (8-88)||(34703508-34703588)
chr7 (23-83)||(34840614-34840674)
chr7 (22-86)||(46022627-46022691)
[»] chr4 (36 HSPs)
chr4 (1-88)||(28702056-28702143)
chr4 (17-88)||(28702135-28702206)
chr4 (9-86)||(21859479-21859556)
chr4 (9-86)||(21915342-21915419)
chr4 (31-81)||(34134591-34134641)
chr4 (17-79)||(36869976-36870039)
chr4 (23-79)||(21859562-21859618)
chr4 (23-79)||(21915425-21915481)
chr4 (8-88)||(55087776-55087856)
chr4 (24-89)||(17655045-17655110)
chr4 (22-86)||(56364405-56364469)
chr4 (29-88)||(17655148-17655207)
chr4 (17-88)||(36072644-36072715)
chr4 (29-88)||(49481875-49481934)
chr4 (17-83)||(16912439-16912505)
chr4 (31-88)||(35151656-35151713)
chr4 (8-88)||(5281200-5281280)
chr4 (29-81)||(5816625-5816677)
chr4 (31-79)||(44755517-44755565)
chr4 (29-84)||(3740394-3740449)
chr4 (37-88)||(26920766-26920817)
chr4 (1-88)||(36072565-36072652)
chr4 (23-86)||(38381973-38382036)
chr4 (17-83)||(3094340-3094406)
chr4 (8-82)||(13689601-13689675)
chr4 (23-77)||(37255688-37255742)
chr4 (10-88)||(55935983-55936060)
chr4 (23-76)||(26636520-26636573)
chr4 (24-77)||(44171513-44171565)
chr4 (23-88)||(54164893-54164958)
chr4 (8-88)||(5418580-5418660)
chr4 (29-81)||(26920674-26920726)
chr4 (9-89)||(27537050-27537130)
chr4 (22-86)||(39160893-39160957)
chr4 (22-86)||(47181556-47181620)
chr4 (22-86)||(48402490-48402554)
[»] chr1 (36 HSPs)
chr1 (1-81)||(11989367-11989447)
chr1 (1-88)||(29302059-29302147)
chr1 (9-88)||(47752-47831)
chr1 (17-88)||(29302139-29302210)
chr1 (17-88)||(11989304-11989375)
chr1 (31-88)||(47681-47738)
chr1 (25-88)||(13043791-13043854)
chr1 (17-88)||(39075982-39076053)
chr1 (25-81)||(13043723-13043779)
chr1 (17-89)||(27936745-27936817)
chr1 (29-81)||(35156329-35156381)
chr1 (17-89)||(39075843-39075915)
chr1 (29-89)||(35156259-35156319)
chr1 (9-88)||(6758541-6758620)
chr1 (8-91)||(8258008-8258091)
chr1 (23-69)||(39075931-39075977)
chr1 (8-88)||(37734838-37734918)
chr1 (23-82)||(5431420-5431479)
chr1 (9-88)||(13983200-13983279)
chr1 (29-88)||(23575404-23575463)
chr1 (29-88)||(33939383-33939442)
chr1 (29-88)||(49586084-49586143)
chr1 (17-83)||(1409123-1409189)
chr1 (17-83)||(39940560-39940626)
chr1 (9-51)||(41007743-41007785)
chr1 (31-88)||(32914650-32914707)
chr1 (8-88)||(639794-639874)
chr1 (8-79)||(2349821-2349893)
chr1 (8-88)||(3384288-3384368)
chr1 (8-88)||(4602709-4602789)
chr1 (23-83)||(19580273-19580333)
chr1 (8-88)||(31008254-31008334)
chr1 (24-88)||(31998270-31998334)
chr1 (8-88)||(33604056-33604136)
chr1 (22-82)||(46906862-46906922)
chr1 (8-88)||(48022590-48022670)
[»] chr8 (30 HSPs)
chr8 (17-88)||(17087350-17087421)
chr8 (1-83)||(9878973-9879055)
chr8 (18-86)||(17087422-17087490)
chr8 (17-88)||(42749050-42749121)
chr8 (17-82)||(92912-92977)
chr8 (23-83)||(13029394-13029454)
chr8 (14-88)||(92838-92912)
chr8 (17-88)||(9878910-9878981)
chr8 (26-78)||(9232538-9232591)
chr8 (23-72)||(13029338-13029387)
chr8 (24-88)||(24287780-24287844)
chr8 (17-88)||(33070160-33070231)
chr8 (1-88)||(33070223-33070310)
chr8 (29-88)||(40640273-40640332)
chr8 (9-88)||(36916578-36916657)
chr8 (29-88)||(44319516-44319575)
chr8 (31-81)||(14700329-14700379)
chr8 (23-88)||(1739645-1739710)
chr8 (14-51)||(13080120-13080157)
chr8 (23-88)||(13211319-13211384)
chr8 (7-88)||(14381233-14381314)
chr8 (9-78)||(34326311-34326380)
chr8 (24-88)||(2296469-2296533)
chr8 (24-88)||(2382581-2382645)
chr8 (37-85)||(7258679-7258727)
chr8 (8-88)||(9056086-9056166)
chr8 (29-88)||(15037836-15037896)
chr8 (23-83)||(24820377-24820437)
chr8 (23-83)||(28882664-28882724)
chr8 (8-88)||(40098825-40098905)
[»] chr3 (26 HSPs)
chr3 (1-89)||(40470412-40470500)
chr3 (17-88)||(40470492-40470563)
chr3 (23-88)||(22456260-22456325)
chr3 (10-83)||(30578289-30578362)
chr3 (32-88)||(26143537-26143593)
chr3 (17-78)||(611587-611648)
chr3 (15-83)||(17109264-17109332)
chr3 (29-88)||(43818857-43818916)
chr3 (10-88)||(54595857-54595934)
chr3 (22-86)||(21217163-21217227)
chr3 (29-81)||(36566721-36566773)
chr3 (29-81)||(43818939-43818991)
chr3 (9-88)||(331864-331943)
chr3 (37-76)||(17109332-17109371)
chr3 (14-89)||(26143465-26143540)
chr3 (10-76)||(36344440-36344507)
chr3 (29-88)||(38677560-38677619)
chr3 (29-79)||(336070-336120)
chr3 (9-51)||(4980339-4980381)
chr3 (24-82)||(36571455-36571513)
chr3 (10-51)||(23444340-23444381)
chr3 (23-88)||(26121619-26121684)
chr3 (23-88)||(26244460-26244525)
chr3 (23-76)||(39836945-39836998)
chr3 (24-89)||(47334723-47334788)
chr3 (23-88)||(48191710-48191775)
[»] chr5 (37 HSPs)
chr5 (17-88)||(20019822-20019893)
chr5 (4-94)||(25772143-25772234)
chr5 (1-88)||(27314533-27314620)
chr5 (17-89)||(1996841-1996913)
chr5 (1-88)||(1996905-1996993)
chr5 (16-88)||(7725027-7725099)
chr5 (24-88)||(25772236-25772300)
chr5 (17-88)||(7724955-7725026)
chr5 (17-88)||(27314470-27314541)
chr5 (13-88)||(34867621-34867696)
chr5 (23-88)||(291878-291943)
chr5 (9-76)||(16899694-16899761)
chr5 (23-88)||(291785-291850)
chr5 (24-79)||(16899768-16899823)
chr5 (23-89)||(29232884-29232950)
chr5 (8-88)||(26300106-26300186)
chr5 (9-88)||(1100123-1100202)
chr5 (8-91)||(19531366-19531449)
chr5 (14-77)||(39035458-39035521)
chr5 (29-83)||(40515227-40515281)
chr5 (8-88)||(13311170-13311249)
chr5 (23-83)||(25792926-25792986)
chr5 (24-88)||(26300192-26300256)
chr5 (8-88)||(35969194-35969274)
chr5 (8-88)||(37944597-37944677)
chr5 (37-88)||(11171997-11172047)
chr5 (29-88)||(26141750-26141809)
chr5 (29-88)||(34867546-34867605)
chr5 (8-83)||(42013822-42013897)
chr5 (17-83)||(1098701-1098767)
chr5 (23-76)||(1098635-1098688)
chr5 (23-88)||(43506174-43506239)
chr5 (24-88)||(12646585-12646649)
chr5 (22-86)||(17625638-17625701)
chr5 (8-88)||(23914836-23914916)
chr5 (29-81)||(25358060-25358112)
chr5 (17-81)||(31963521-31963585)
[»] chr2 (25 HSPs)
chr2 (9-88)||(20057172-20057251)
chr2 (1-88)||(25899833-25899920)
chr2 (17-83)||(23992450-23992516)
chr2 (1-81)||(23992377-23992458)
chr2 (23-76)||(25899918-25899971)
chr2 (14-88)||(4817063-4817136)
chr2 (23-76)||(20057113-20057166)
chr2 (14-81)||(4816988-4817054)
chr2 (12-88)||(12242309-12242385)
chr2 (23-88)||(31102029-31102094)
chr2 (23-88)||(45473072-45473137)
chr2 (22-86)||(3098205-3098269)
chr2 (12-88)||(3123972-3124048)
chr2 (8-88)||(5574175-5574255)
chr2 (22-86)||(25270935-25270999)
chr2 (29-88)||(26234110-26234169)
chr2 (9-88)||(41805269-41805348)
chr2 (17-83)||(44274615-44274681)
chr2 (23-88)||(9431192-9431257)
chr2 (23-88)||(11726575-11726640)
chr2 (24-88)||(13988373-13988436)
chr2 (8-88)||(30902338-30902417)
chr2 (34-90)||(31582374-31582430)
chr2 (22-86)||(41056967-41057031)
chr2 (23-83)||(41824340-41824400)
[»] chr6 (13 HSPs)
chr6 (1-89)||(32254879-32254967)
chr6 (23-91)||(13462925-13462993)
chr6 (23-88)||(14310601-14310666)
chr6 (24-89)||(28554941-28555006)
chr6 (1-88)||(18097055-18097142)
chr6 (29-88)||(31398312-31398371)
chr6 (17-78)||(14173395-14173456)
chr6 (17-78)||(14177931-14177992)
chr6 (8-81)||(21506528-21506601)
chr6 (56-88)||(17268126-17268158)
chr6 (31-83)||(18491749-18491801)
chr6 (7-83)||(30460677-30460753)
chr6 (23-83)||(31632187-31632247)
[»] scaffold1640 (1 HSPs)
scaffold1640 (1-88)||(1195-1282)
[»] scaffold0024 (1 HSPs)
scaffold0024 (23-88)||(120225-120290)
[»] scaffold0149 (1 HSPs)
scaffold0149 (23-83)||(24686-24746)


Alignment Details
Target: chr7 (Bit Score: 168; Significance: 4e-90; HSPs: 45)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 33 - 232
Target Start/End: Original strand, 2297421 - 2297620
Alignment:
Q  33 ttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgtaggtaacatgagtgtaggtttcctaaaaagaacatgagtgtaggt 132  Q
    ||||||||||||||||||||||||||||||  |||||||||| ||||||| || ||||||| ||||||| ||||||||||||||||||||||||||||||    
T  2297421 ttaatgaatgaatctaaaaatcaaacttttgtttatattagtaaccggagaatataggtaagatgagtggaggtttcctaaaaagaacatgagtgtaggt 2297520  T
Q  133 tgtaactgggtaacacactatcctgcagaaagaaaaaagacttgtgcgatccccgggaatattggggttgcaatgatctcgatagtataatgatgtccat 232  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2297521 tgtaattgggtaacacactatcctgcagaaagaaaaaagacttgtgcgatccccgggaatattggggttgcaatgatctcgatagtataatgatgtccat 2297620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 4 - 88
Target Start/End: Complemental strand, 2297410 - 2297326
Alignment:
Q  4 tagtatataataaagactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||    
T  2297410 tagtctataataaagactgcatacgtcatttaatgaatgaatctaaaaatcaaatttttgcttatattagtgaccggagggtgta 2297326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 9 - 88
Target Start/End: Complemental strand, 46648419 - 46648340
Alignment:
Q  9 tataataaagactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||    
T  46648419 tataataaagactacatacatcatttaatgaatgaatctaaaaatcaaatttttgcttatattagtgacaggaggatgta 46648340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 8571448 - 8571376
Alignment:
Q  17 agactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgtag 89  Q
    ||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  8571448 agactacatatgtcatttaatgaatgaatctaaaaatcaaacttttgcttatattagtgaccggagggtgtag 8571376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 2360515 - 2360444
Alignment:
Q  17 agactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||    
T  2360515 agactacatacgtcatttaatgaatgaatctaaaaatcaaatttttgcttatattagtgaccggagggtgta 2360444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 8571440 - 8571527
Alignment:
Q  1 atgtagtatataataaagactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    ||||||| |||||||||| || ||||| ||||||||||||||||| ||||||||||| |||| |||||||||||||||||||| ||||    
T  8571440 atgtagtctataataaagtctacatacatcatttaatgaatgaatttaaaaatcaaatttttgcttatattagtgaccggagggtgta 8571527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 10422866 - 10422953
Alignment:
Q  1 atgtagtatataataaagactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    ||||||| ||||||||||  | ||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||| ||||    
T  10422866 atgtagtctataataaagtttacatacgtcatttaatgaatgaatctaaaaattaaatttttgcttatattagtgaccggagggtgta 10422953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 2360507 - 2360594
Alignment:
Q  1 atgtagtatataataaagactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    ||||||| |||||||||| |  ||||||| ||||||| ||||||||||||||||||| |||| |||||||||||||||||||| ||||    
T  2360507 atgtagtctataataaagtccacatacgttatttaataaatgaatctaaaaatcaaatttttccttatattagtgaccggagggtgta 2360594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 10422874 - 10422803
Alignment:
Q  17 agactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    ||||| |||||||||||||| |||||||||||||||| ||| |||| |||||||||||||||||||||||||    
T  10422874 agactacatacgtcatttaacgaatgaatctaaaaattaaatttttgcttatattagtgaccggaggatgta 10422803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 12171324 - 12171237
Alignment:
Q  1 atgtagtatataataaagactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    ||||||| |||||||||  || ||||||| ||||||||||||||||||||||||||| |||| ||||||||| |||||||||| ||||    
T  12171324 atgtagtctataataaaatctacatacgttatttaatgaatgaatctaaaaatcaaatttttgcttatattaatgaccggagggtgta 12171237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 26824993 - 26825064
Alignment:
Q  18 gactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgtag 89  Q
    |||| |||| |||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||    
T  26824993 gactacatatgtcatttaatgaatgaatttaaaaatcaaatttttacttatattagtgatcggaggatgtag 26825064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 23 - 81
Target Start/End: Complemental strand, 10981896 - 10981838
Alignment:
Q  23 catacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccgga 81  Q
    |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||    
T  10981896 catacgtcatctaatgaatgaatctaaaaattaaacttttacttatattagtgaccgga 10981838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 6586055 - 6585991
Alignment:
Q  24 atacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    ||||||||||||||||||||| |||||||||||||||||  ||||||||||||||||||| ||||    
T  6586055 atacgtcatttaatgaatgaagctaaaaatcaaacttttgtttatattagtgaccggagggtgta 6585991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 12171316 - 12171380
Alignment:
Q  17 agactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccgga 81  Q
    ||||| ||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  12171316 agactacatacatcatttaataaatgaatctaaaaatcaaatttttacttatattagtgaccgga 12171380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 8561168 - 8561255
Alignment:
Q  1 atgtagtatataataaagactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    ||||||| ||||||||||||| ||||| | ||||||| ||||||| ||||||||||| ||||| ||||||||||||| ||||| ||||    
T  8561168 atgtagtctataataaagactacatacattatttaataaatgaatttaaaaatcaaatttttatttatattagtgacaggagggtgta 8561255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 8595205 - 8595292
Alignment:
Q  1 atgtagtatataataaagactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    ||||||| |||||||||  || ||||| |||||||||||||||||  |||||||||| |||| |||||||||||||||||||| ||||    
T  8595205 atgtagtctataataaatgctacatacatcatttaatgaatgaattcaaaaatcaaatttttgcttatattagtgaccggagggtgta 8595292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 16777958 - 16777887
Alignment:
Q  17 agactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    ||||| ||||| ||||||||| ||||||||||||||| |||||||| |||||||||||||||||||| ||||    
T  16777958 agactacatacatcatttaataaatgaatctaaaaattaaacttttgcttatattagtgaccggagggtgta 16777887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 28285469 - 28285534
Alignment:
Q  23 catacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    ||||| ||||||||||||||||| ||||||||||| |||| ||||||||| |||||||||||||||    
T  28285469 catacatcatttaatgaatgaatttaaaaatcaaatttttgcttatattaatgaccggaggatgta 28285534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 26824965 - 26824901
Alignment:
Q  24 atacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    |||||||||||||||||||||||||||||| ||| |||| |||||| ||||||||||||| ||||    
T  26824965 atacgtcatttaatgaatgaatctaaaaattaaatttttgcttatactagtgaccggagggtgta 26824901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 88
Target Start/End: Original strand, 46648716 - 46648772
Alignment:
Q  32 tttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    |||||| ||||||||||||||||||| |||| |||||||||||||||||||| ||||    
T  46648716 tttaataaatgaatctaaaaatcaaaattttgcttatattagtgaccggagggtgta 46648772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 8595213 - 8595142
Alignment:
Q  17 agactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    ||||| ||||| ||||||||||||||||||||||||  ||| |||| |||||||| ||||||||||| ||||    
T  8595213 agactacatacatcatttaatgaatgaatctaaaaaataaattttttcttatatttgtgaccggagggtgta 8595142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 23797406 - 23797493
Alignment:
Q  1 atgtagtatataataaagactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    ||||||| ||||||||||||   |||| ||||| | |||||||||||||||  |||| ||||||||||| ||||||||||||| ||||    
T  23797406 atgtagtctataataaagaccagatacatcattaattgaatgaatctaaaatgcaaaattttacttataatagtgaccggagggtgta 23797493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 43813191 - 43813125
Alignment:
Q  17 agactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggagg 83  Q
    ||||| ||||| ||||||| ||||||||||||||||| ||| |||| |||||| |||||||||||||    
T  43813191 agactacatacttcatttattgaatgaatctaaaaattaaatttttgcttataatagtgaccggagg 43813125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 8561176 - 8561116
Alignment:
Q  17 agactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgac 77  Q
    ||||| ||||||||||||||| |||||| |||||||||||||||||  ||| |||||||||    
T  8561176 agactacatacgtcatttaattaatgaacctaaaaatcaaacttttggttacattagtgac 8561116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 23797414 - 23797343
Alignment:
Q  17 agactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    ||||| ||||| |||||||||||||||||||||||  |||| |||| |||||| ||||||||| ||| ||||    
T  23797414 agactacatacatcatttaatgaatgaatctaaaatgcaaaattttgcttataatagtgaccgaagggtgta 23797343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 25768701 - 25768614
Alignment:
Q  1 atgtagtatataataaagactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    ||||||| ||||||||||||| ||||  |||||   ||||||||| |||||    |||||||||||||| ||||||||||||||||||    
T  25768701 atgtagtctataataaagactacatagatcattacttgaatgaatataaaatgataacttttacttataatagtgaccggaggatgta 25768614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 21387658 - 21387572
Alignment:
Q  1 atgtagtatataataaagactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgt 87  Q
    |||| |||||||||||||||| ||||| ||||| | |||||||||||| |||    | |||| ||||||||||||||| ||||||||    
T  21387658 atgtggtatataataaagactacatacatcattaattgaatgaatctagaaaatggatttttgcttatattagtgaccagaggatgt 21387572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 88
Target Start/End: Complemental strand, 1706893 - 1706828
Alignment:
Q  23 catacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    ||||| ||||| | |||||| |||||||||  ||| ||||||||||||||||||||||||| ||||    
T  1706893 catacatcattaattgaatgtatctaaaaaataaatttttacttatattagtgaccggagggtgta 1706828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 38238859 - 38238778
Alignment:
Q  8 atataataaagactgcatacgtcatttaatgaatgaatctaaaaa-tcaaacttttacttatattagtgaccggaggatgta 88  Q
    |||||||||||||  ||||| ||||| | |||||| ||||||||| | ||| |||| |||||||||||||||||||| ||||    
T  38238859 atataataaagaccacatacatcattaattgaatgtatctaaaaagtgaaatttttgcttatattagtgaccggagggtgta 38238778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 16777950 - 16777998
Alignment:
Q  1 atgtagtatataataaagactgcatacgtcatttaatgaatgaatctaa 49  Q
    ||||||| ||||||||||||| ||||| ||||||||| |||||||||||    
T  16777950 atgtagtctataataaagactacatacatcatttaataaatgaatctaa 16777998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 21099317 - 21099377
Alignment:
Q  17 agactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgac 77  Q
    ||||| ||||||||||||| ||||||||| ||||||   |||||||||||||| |||||||    
T  21099317 agactacatacgtcatttattgaatgaatataaaaagtgaacttttacttataatagtgac 21099377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 41404074 - 41404010
Alignment:
Q  24 atacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    |||| |||||||||||||||||||||||    || |||| |||||| ||||||||||||||||||    
T  41404074 atacatcatttaatgaatgaatctaaaatgataatttttgcttataatagtgaccggaggatgta 41404010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 82
Target Start/End: Complemental strand, 11602820 - 11602769
Alignment:
Q  31 atttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggag 82  Q
    |||||||||||||| |||||||   |||||||||||||| ||||||||||||    
T  11602820 atttaatgaatgaacctaaaaaatcaacttttacttataatagtgaccggag 11602769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 74
Target Start/End: Complemental strand, 37101755 - 37101704
Alignment:
Q  23 catacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagt 74  Q
    ||||| |||||||||||||||||||||||  |||| ||||||||||| ||||    
T  37101755 catacatcatttaatgaatgaatctaaaatgcaaagttttacttataatagt 37101704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 89
Target Start/End: Complemental strand, 10095779 - 10095713
Alignment:
Q  23 catacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgtag 89  Q
    ||||| |||||||||||||||||||||||    || |||| |||||| ||||||||||||| |||||    
T  10095779 catacatcatttaatgaatgaatctaaaatgttaatttttgcttataatagtgaccggagggtgtag 10095713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 81
Target Start/End: Original strand, 46944017 - 46944075
Alignment:
Q  23 catacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccgga 81  Q
    ||||| ||||| | |||||| |||||||||| ||| |||||||||||||| ||||||||    
T  46944017 catacatcattaattgaatgtatctaaaaattaaatttttacttatattaatgaccgga 46944075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 76
Target Start/End: Original strand, 6586061 - 6586102
Alignment:
Q  35 aatgaatgaatctaaaaatcaaacttttacttatattagtga 76  Q
    |||||||||| |||||||||||||||||  ||||||||||||    
T  6586061 aatgaatgaagctaaaaatcaaacttttgtttatattagtga 6586102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 88
Target Start/End: Complemental strand, 25079267 - 25079202
Alignment:
Q  23 catacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    ||||| ||||| | |||||| |||||||||  | | |||| |||||||||||||||||||||||||    
T  25079267 catacatcattaattgaatgtatctaaaaagtagatttttgcttatattagtgaccggaggatgta 25079202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 7701249 - 7701185
Alignment:
Q  22 gcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatg 86  Q
    |||||| |||||||||||||||||||||||   | | |||| |||||| ||||||||||| ||||    
T  7701249 gcatacatcatttaatgaatgaatctaaaatgtagatttttgcttataatagtgaccggatgatg 7701185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 8169170 - 8169234
Alignment:
Q  17 agactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccgga 81  Q
    ||||| ||||| ||||||| ||||||||||||||||   ||||||| |||||| |||| ||||||    
T  8169170 agactacatacatcatttattgaatgaatctaaaaagttaacttttgcttataatagtaaccgga 8169234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 83
Target Start/End: Original strand, 22281884 - 22281944
Alignment:
Q  23 catacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggagg 83  Q
    ||||| ||||||||||||| |||||||||  |||| |||| |||||| || ||||||||||    
T  22281884 catacatcatttaatgaataaatctaaaatacaaagttttgcttataataatgaccggagg 22281944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 24936598 - 24936678
Alignment:
Q  8 atataataaagactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    |||||||||||||  ||||| ||||| | |||||  |||||||||   || ||||| |||||||||| |||||||||||||    
T  24936598 atataataaagaccacatacatcattaattgaatatatctaaaaagtgaatttttatttatattagtaaccggaggatgta 24936678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 34703508 - 34703588
Alignment:
Q  8 atataataaagactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    |||||||||||||   |||| ||||| | |||||| |||||||||   || |||| |||||||||||||||||||| ||||    
T  34703508 atataataaagaccatatacatcattaattgaatgtatctaaaaagtgaatttttgcttatattagtgaccggagggtgta 34703588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 83
Target Start/End: Complemental strand, 34840674 - 34840614
Alignment:
Q  23 catacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggagg 83  Q
    ||||| ||||||| ||||||||||||||||   ||||||| |||||| || ||||||||||    
T  34840674 catacatcatttattgaatgaatctaaaaagtgaacttttgcttataataatgaccggagg 34840614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #45
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 46022627 - 46022691
Alignment:
Q  22 gcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatg 86  Q
    |||||| |||||||||||||||||||||||   | | |||| |||||| ||||||||||| ||||    
T  46022627 gcatacatcatttaatgaatgaatctaaaatgtagattttttcttataatagtgaccggatgatg 46022691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 28702143 - 28702056
Alignment:
Q  1 atgtagtatataataaagactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    ||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  28702143 atgtagtctataataaagactacatacatcatttaatgaatgaatctaaaaatcaaacttttgcttatattagtgaccggagggtgta 28702056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 28702135 - 28702206
Alignment:
Q  17 agactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||    
T  28702135 agactacatacgtcatttaatgaatgaacctaaaaatcaaacttttgcttatattagtgaccggagggtgta 28702206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 9 - 86
Target Start/End: Complemental strand, 21859556 - 21859479
Alignment:
Q  9 tataataaagactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatg 86  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||  ||||||||||||||||| ||||    
T  21859556 tataataaagactacatacatcatttaatgaatgaatctaaaaatcaaatttttgtttatattagtgaccggaagatg 21859479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 9 - 86
Target Start/End: Complemental strand, 21915419 - 21915342
Alignment:
Q  9 tataataaagactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatg 86  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||  ||||||||||||||||| ||||    
T  21915419 tataataaagactacatacatcatttaatgaatgaatctaaaaatcaaatttttgtttatattagtgaccggaagatg 21915342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 34134591 - 34134641
Alignment:
Q  31 atttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccgga 81  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  34134591 atttaatgaatgaatctaaaaatcaaatttttacttatattagtgaccgga 34134641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 36870039 - 36869976
Alignment:
Q  17 agactgcatacgtcatttaatgaatgaatctaaaaatcaaactttta-cttatattagtgaccg 79  Q
    ||||| ||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||    
T  36870039 agacttcatacgtcatttattgaatgaatctaaaaattaaacttttagcttatattagtgaccg 36869976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 79
Target Start/End: Original strand, 21859562 - 21859618
Alignment:
Q  23 catacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccg 79  Q
    ||||||| ||||||||||||||||||||||||||| ||||| |||||||||| ||||    
T  21859562 catacgttatttaatgaatgaatctaaaaatcaaaattttatttatattagtaaccg 21859618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 79
Target Start/End: Original strand, 21915425 - 21915481
Alignment:
Q  23 catacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccg 79  Q
    ||||||| ||||||||||||||||||||||||||| ||||| |||||||||| ||||    
T  21915425 catacgttatttaatgaatgaatctaaaaatcaaaattttatttatattagtaaccg 21915481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 55087776 - 55087856
Alignment:
Q  8 atataataaagactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    ||||||||||||| |||||| ||||| | |||||| |||||||||| | | |||| |||||||||||||||||||| ||||    
T  55087776 atataataaagaccgcatacatcattaattgaatgtatctaaaaattagatttttgcttatattagtgaccggagggtgta 55087856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 17655110 - 17655045
Alignment:
Q  24 atacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgtag 89  Q
    |||||| |||||||||||||||||||||| |||| ||||  ||||||||||||| ||||| |||||    
T  17655110 atacgttatttaatgaatgaatctaaaaaccaaaattttgtttatattagtgactggagggtgtag 17655045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 56364405 - 56364469
Alignment:
Q  22 gcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatg 86  Q
    |||||| |||||||||||||||||||||||   | | ||||||||||| ||||||||||||||||    
T  56364405 gcatacatcatttaatgaatgaatctaaaatgtagatttttacttataatagtgaccggaggatg 56364469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 88
Target Start/End: Original strand, 17655148 - 17655207
Alignment:
Q  29 tcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    ||||||||||||||||||||||||||||| ||||  |||| ||||||| |||||| ||||    
T  17655148 tcatttaatgaatgaatctaaaaatcaaatttttgtttatcttagtgatcggagggtgta 17655207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 36072644 - 36072715
Alignment:
Q  17 agactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    ||||| ||||| ||||||||||||||||| |||||  |||| ||||||||||| ||||||| ||| ||||||    
T  36072644 agactacatacatcatttaatgaatgaatttaaaatgcaaagttttacttataatagtgactggaagatgta 36072715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 88
Target Start/End: Complemental strand, 49481934 - 49481875
Alignment:
Q  29 tcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    ||||| |||||||||||||||||   |||||||| |||||| ||||||||||||||||||    
T  49481934 tcattaaatgaatgaatctaaaatgtaaacttttgcttataatagtgaccggaggatgta 49481875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 16912505 - 16912439
Alignment:
Q  17 agactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggagg 83  Q
    ||||| ||||| ||||||| ||||||||||||||||| | ||||||||||||| || ||| ||||||    
T  16912505 agactacatacatcatttattgaatgaatctaaaaattacacttttacttataatattgatcggagg 16912439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 88
Target Start/End: Complemental strand, 35151713 - 35151656
Alignment:
Q  31 atttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    |||||||||||||||||||||   ||| ||||||||||| ||||||||||||| ||||    
T  35151713 atttaatgaatgaatctaaaatataaaattttacttataatagtgaccggagggtgta 35151656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 5281200 - 5281280
Alignment:
Q  8 atataataaagactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    ||||||||||||   ||||| ||||| | |||||| |||||||||   || ||||||||||||||||||||||||| ||||    
T  5281200 atataataaagatcacatacatcattaattgaatgtatctaaaaagtgaatttttacttatattagtgaccggagggtgta 5281280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 5816625 - 5816677
Alignment:
Q  29 tcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccgga 81  Q
    |||||||||||||||||||||||  |||| ||||| ||||| |||||||||||    
T  5816625 tcatttaatgaatgaatctaaaatgcaaagttttatttataatagtgaccgga 5816677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 79
Target Start/End: Original strand, 44755517 - 44755565
Alignment:
Q  31 atttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccg 79  Q
    |||||||||||||||||||||  |||| ||||||||||| |||||||||    
T  44755517 atttaatgaatgaatctaaaatgcaaagttttacttataatagtgaccg 44755565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 84
Target Start/End: Original strand, 3740394 - 3740449
Alignment:
Q  29 tcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggagga 84  Q
    ||||||| |||||||| |||||||   ||||||| |||||||||||||||||||||    
T  3740394 tcatttattgaatgaacctaaaaagtcaacttttgcttatattagtgaccggagga 3740449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 88
Target Start/End: Original strand, 26920766 - 26920817
Alignment:
Q  37 tgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    |||||||||||||||  |||| ||||||||||| |||||| |||||||||||    
T  26920766 tgaatgaatctaaaatgcaaagttttacttataatagtgagcggaggatgta 26920817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 36072652 - 36072565
Alignment:
Q  1 atgtagtatataataaagactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    ||||||| ||||||||||||   |||| ||||  | |||||||||||||||  |||| |||| |||||| ||||||||||||| ||||    
T  36072652 atgtagtctataataaagaccatatacatcataaattgaatgaatctaaaatgcaaaattttgcttataatagtgaccggagggtgta 36072565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 86
Target Start/End: Complemental strand, 38382036 - 38381973
Alignment:
Q  23 catacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatg 86  Q
    ||||| ||||||||| |||||||||||||   ||| |||| |||||| ||||||||||||||||    
T  38382036 catacatcatttaatcaatgaatctaaaatgtaaatttttgcttataatagtgaccggaggatg 38381973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 3094340 - 3094406
Alignment:
Q  17 agactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggagg 83  Q
    ||||| ||||||||||||| |||||||| |||||||   |||||||  ||||| |||||||||||||    
T  3094340 agactacatacgtcatttattgaatgaacctaaaaagtcaacttttggttataatagtgaccggagg 3094406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 82
Target Start/End: Original strand, 13689601 - 13689675
Alignment:
Q  8 atataataaagactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggag 82  Q
    |||||||||||||  ||||| | ||| | ||||||||||||||||   || |||| |||||||||||||||||||    
T  13689601 atataataaagacaacatacattattaattgaatgaatctaaaaagtgaatttttgcttatattagtgaccggag 13689675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 77
Target Start/End: Complemental strand, 37255742 - 37255688
Alignment:
Q  23 catacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgac 77  Q
    ||||| ||||||| |||||||||||||||| | ||||||| |||||| |||||||    
T  37255742 catacatcatttattgaatgaatctaaaaaaccaacttttgcttataatagtgac 37255688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 88
Target Start/End: Complemental strand, 55936060 - 55935983
Alignment:
Q  10 ataataaagactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    |||||||||||   |||| ||||||||||||||||||||||| | |   |||| |||||| ||||||||||||||||||    
T  55936060 ataataaagacgatatacatcatttaatgaatgaatctaaaatt-atgtttttgcttataatagtgaccggaggatgta 55935983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 26636520 - 26636573
Alignment:
Q  23 catacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtga 76  Q
    ||||| ||||||| ||||||||||||||||  ||| ||||||||||| ||||||    
T  26636520 catacatcatttattgaatgaatctaaaaaataaatttttacttataatagtga 26636573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 44171513 - 44171565
Alignment:
Q  24 atacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgac 77  Q
    |||| |||||||||||||||| ||||||||| ||||||| |||||| |||||||    
T  44171513 atacatcatttaatgaatgaacctaaaaatc-aacttttgcttataatagtgac 44171565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 54164893 - 54164958
Alignment:
Q  23 catacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    ||||| ||||||| ||||||||||||||||  | | |||| |||||| ||||||||||||| ||||    
T  54164893 catacatcatttattgaatgaatctaaaaaatagatttttgcttataatagtgaccggagggtgta 54164958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 5418580 - 5418660
Alignment:
Q  8 atataataaagactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    |||||||||||||  ||||| ||||| | | |||| |||||||||  ||| |||| ||||||||||||| |||||| ||||    
T  5418580 atataataaagaccacatacatcattaattcaatgtatctaaaaagtaaatttttgcttatattagtgatcggagggtgta 5418660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 81
Target Start/End: Complemental strand, 26920726 - 26920674
Alignment:
Q  29 tcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccgga 81  Q
    |||||||| ||||||||||||||  |||| |||| |||||| |||||||||||    
T  26920726 tcatttaacgaatgaatctaaaatacaaaattttgcttataatagtgaccgga 26920674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 27537130 - 27537050
Alignment:
Q  9 tataataaagactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgtag 89  Q
    |||||||||||   | ||| |||||||||||||||||||||||   ||| |||| |||||| || ||||| ||||||||||    
T  27537130 tataataaagatcacttacatcatttaatgaatgaatctaaaatgtaaatttttgcttataataatgaccagaggatgtag 27537050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 39160893 - 39160957
Alignment:
Q  22 gcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatg 86  Q
    |||||| |||||||||||||||||||||||   | | ||||  ||||| ||||||||||||||||    
T  39160893 gcatacatcatttaatgaatgaatctaaaatgtagatttttgtttataatagtgaccggaggatg 39160957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 47181620 - 47181556
Alignment:
Q  22 gcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatg 86  Q
    |||||| ||||||||||||||||| |||||   | | |||| |||||| ||||||||||||||||    
T  47181620 gcatacatcatttaatgaatgaatttaaaatgtagatttttgcttataatagtgaccggaggatg 47181556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 48402490 - 48402554
Alignment:
Q  22 gcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatg 86  Q
    |||||| |||||||||||||||||||||||   | | |||| |||||| ||||| ||||||||||    
T  48402490 gcatacatcatttaatgaatgaatctaaaatatagatttttgcttataatagtggccggaggatg 48402554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 11989367 - 11989447
Alignment:
Q  1 atgtagtatataataaagactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccgga 81  Q
    ||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  11989367 atgtagtctataataaagactacatacatcatttaatgaatgaatctaaaaatcaaacttttgcttatattagtgaccgga 11989447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 29302147 - 29302059
Alignment:
Q  1 atgtagtatataataaa-gactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    ||||||| ||||||||| | || ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||    
T  29302147 atgtagtctataataaaagtctacatacgtcatttaatgaatgaatctaaaaatcaaatttttgcttatattagtgaccggagggtgta 29302059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 9 - 88
Target Start/End: Original strand, 47752 - 47831
Alignment:
Q  9 tataataaagactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||||||| |||| ||||||||| |||||||||| ||||    
T  47752 tataataaagactacatacatcatttaatgaatgaatctaaaaatcaaagttttgcttatattaatgaccggagggtgta 47831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 29302139 - 29302210
Alignment:
Q  17 agactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||    
T  29302139 agactacatacgtcatttaatgaatgaatctaaaaatcaaatttttgcttatattagtgaccggagggtgta 29302210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 11989375 - 11989304
Alignment:
Q  17 agactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||| ||||    
T  11989375 agactacatacgtcatttaatgaatgaacctaaaaatcaaacttttgcttatatcagtgaccggagggtgta 11989304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 31 - 88
Target Start/End: Complemental strand, 47738 - 47681
Alignment:
Q  31 atttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  47738 atttaatgaatgaatctaaaaatcaaaattttacttatattagtgaccggagggtgta 47681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 25 - 88
Target Start/End: Original strand, 13043791 - 13043854
Alignment:
Q  25 tacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||| ||||    
T  13043791 tacgtcatttaataaatgaatctaaaaatcaaacttttgcttatattagtgatcggagggtgta 13043854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 39075982 - 39076053
Alignment:
Q  17 agactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    ||||| ||||| ||||||||||||||||||||||| |||||||||| |||||| |||||||| |||||||||    
T  39075982 agactacatacatcatttaatgaatgaatctaaaattcaaacttttgcttatactagtgacccgaggatgta 39076053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 13043779 - 13043723
Alignment:
Q  25 tacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccgga 81  Q
    ||||||||||||| ||||||||||||||||||||||||  |||||||||||||||||    
T  13043779 tacgtcatttaataaatgaatctaaaaatcaaacttttgtttatattagtgaccgga 13043723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 27936745 - 27936817
Alignment:
Q  17 agactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgtag 89  Q
    ||||| ||||||||||||||| ||||||||||||||||||  |||| |||||||||||||| ||||| |||||    
T  27936745 agactacatacgtcatttaataaatgaatctaaaaatcaattttttgcttatattagtgactggagggtgtag 27936817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 35156329 - 35156381
Alignment:
Q  29 tcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccgga 81  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  35156329 tcatttaatgaatgaatctaaaaataaaacttttgcttatattagtgaccgga 35156381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 39075915 - 39075843
Alignment:
Q  17 agactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgtag 89  Q
    ||||| ||||| ||||||||||||||||||||||| |||||||||| |||||| |||||||| |||| |||||    
T  39075915 agactacatacatcatttaatgaatgaatctaaaattcaaacttttgcttatactagtgaccagagggtgtag 39075843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 89
Target Start/End: Complemental strand, 35156319 - 35156259
Alignment:
Q  29 tcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgtag 89  Q
    ||||||||||||||||||||||||| ||| ||||  ||||||||||||||||||| |||||    
T  35156319 tcatttaatgaatgaatctaaaaataaaatttttgtttatattagtgaccggagggtgtag 35156259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 88
Target Start/End: Complemental strand, 6758620 - 6758541
Alignment:
Q  9 tataataaagactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    |||||||||||||  |||| ||||| | ||||||||| |||||  |||| |||| |||||| ||||||||||||||||||    
T  6758620 tataataaagactatatacatcattaattgaatgaatgtaaaatgcaaagttttgcttataatagtgaccggaggatgta 6758541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 91
Target Start/End: Original strand, 8258008 - 8258091
Alignment:
Q  8 atataataaagactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgtaggt 91  Q
    |||||||||||||  ||||| ||||| | |||||| |||||||||   || |||| |||||||||||||||||||| |||||||    
T  8258008 atataataaagaccacatacatcattaattgaatgtatctaaaaagtgaatttttgcttatattagtgaccggagggtgtaggt 8258091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 23 - 69
Target Start/End: Complemental strand, 39075977 - 39075931
Alignment:
Q  23 catacgtcatttaatgaatgaatctaaaaatcaaacttttacttata 69  Q
    ||||| ||||||||||||||||||||||| |||||||||| ||||||    
T  39075977 catacatcatttaatgaatgaatctaaaattcaaacttttgcttata 39075931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 37734838 - 37734918
Alignment:
Q  8 atataataaagactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    ||||||||||||| |||||| ||||| | |||||| |||||||||    | |||| |||||||||||||||||||| ||||    
T  37734838 atataataaagaccgcatacatcattaattgaatgtatctaaaaagtggatttttgcttatattagtgaccggagggtgta 37734918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 82
Target Start/End: Original strand, 5431420 - 5431479
Alignment:
Q  23 catacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggag 82  Q
    ||||| ||||||| ||||||||||||||||   || |||| |||||||||||||||||||    
T  5431420 catacatcatttattgaatgaatctaaaaagttaatttttgcttatattagtgaccggag 5431479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 88
Target Start/End: Complemental strand, 13983279 - 13983200
Alignment:
Q  9 tataataaagactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    |||||| ||||||| |||  ||||| | |||||||||||| |||  ||| |||| ||||||||| |||||||||||||||    
T  13983279 tataattaagactgaatatatcattaattgaatgaatctagaaaataaattttttcttatattaatgaccggaggatgta 13983200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 88
Target Start/End: Original strand, 23575404 - 23575463
Alignment:
Q  29 tcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    ||||| |||||||||| ||||||   ||  ||||||||||||||||||||||||||||||    
T  23575404 tcattaaatgaatgaacctaaaatgtaattttttacttatattagtgaccggaggatgta 23575463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 88
Target Start/End: Original strand, 33939383 - 33939442
Alignment:
Q  29 tcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    ||||| |||||||||||||||||   |||||||| |||||| ||||||||||||| ||||    
T  33939383 tcattaaatgaatgaatctaaaatgtaaacttttgcttataatagtgaccggagggtgta 33939442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 88
Target Start/End: Complemental strand, 49586143 - 49586084
Alignment:
Q  29 tcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    ||||| ||||||||||| |||||   |||||||| |||||| ||||||||||||||||||    
T  49586143 tcattaaatgaatgaatttaaaatgtaaacttttgcttataatagtgaccggaggatgta 49586084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 1409123 - 1409189
Alignment:
Q  17 agactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggagg 83  Q
    |||| |||||| ||||||| ||||||||||||||||   || |||| |||||| |||||||||||||    
T  1409123 agaccgcatacatcatttattgaatgaatctaaaaagataatttttgcttataatagtgaccggagg 1409189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 39940560 - 39940626
Alignment:
Q  17 agactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggagg 83  Q
    ||||| ||||| | ||||| ||||||||||||||||  ||| ||||||||||| |||||| ||||||    
T  39940560 agactacatacattatttattgaatgaatctaaaaagtaaatttttacttataatagtgatcggagg 39940626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 51
Target Start/End: Original strand, 41007743 - 41007785
Alignment:
Q  9 tataataaagactgcatacgtcatttaatgaatgaatctaaaa 51  Q
    ||||||||||||  ||||| |||||||||||||||||||||||    
T  41007743 tataataaagaccacatacatcatttaatgaatgaatctaaaa 41007785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 88
Target Start/End: Original strand, 32914650 - 32914707
Alignment:
Q  31 atttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    ||||||||||||||||||||||| ||| ||||  |||||||  ||| |||||||||||    
T  32914650 atttaatgaatgaatctaaaaattaaatttttgtttatattgatgatcggaggatgta 32914707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 639874 - 639794
Alignment:
Q  8 atataataaagactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    |||||||||||||  ||||| ||||| | |||||| |||||||||    | |||| |||||||||||||||||||| ||||    
T  639874 atataataaagaccacatacatcattaattgaatgtatctaaaaagtggatttttgcttatattagtgaccggagggtgta 639794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 79
Target Start/End: Original strand, 2349821 - 2349893
Alignment:
Q  8 atataataaagactgcatacgtcatttaatgaatgaatctaaaaatcaa-acttttacttatattagtgaccg 79  Q
    |||||||||||||| ||||| ||||| | |||||| |||||||||   | | |||||||||||||||||||||    
T  2349821 atataataaagactacatacatcattaattgaatgtatctaaaaaaatagatttttacttatattagtgaccg 2349893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 3384288 - 3384368
Alignment:
Q  8 atataataaagactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    ||||||||||||   ||||| ||||  | |||||| |||||||||   || ||||| ||||||||||||||||||||||||    
T  3384288 atataataaagatcacatacatcatcaattgaatgtatctaaaaagtgaatttttatttatattagtgaccggaggatgta 3384368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 4602709 - 4602789
Alignment:
Q  8 atataataaagactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    |||||||||| ||  ||||  ||||| | |||||| |||||||||   || ||||||||||||||||||||||||| ||||    
T  4602709 atataataaataccacatatatcattaattgaatgtatctaaaaaatgaatttttacttatattagtgaccggaggttgta 4602789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 83
Target Start/End: Original strand, 19580273 - 19580333
Alignment:
Q  23 catacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggagg 83  Q
    ||||| ||||||| ||||||||||||||||  | ||||||  ||||| |||||||||||||    
T  19580273 catacatcatttattgaatgaatctaaaaaatatacttttgtttataatagtgaccggagg 19580333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 31008334 - 31008254
Alignment:
Q  8 atataataaagactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    |||||||||||||  ||||| ||||| | | |||| |||||||||  | | |||| |||||||||||||||||||| ||||    
T  31008334 atataataaagaccacatacatcattaattaaatgtatctaaaaagtagatttttgcttatattagtgaccggagggtgta 31008254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 31998270 - 31998334
Alignment:
Q  24 atacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    |||| ||||| |||||||||||||||||  |||| |||| |||||| |||||| |||| ||||||    
T  31998270 atacatcattaaatgaatgaatctaaaatgcaaagttttgcttataatagtgatcggatgatgta 31998334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 33604056 - 33604136
Alignment:
Q  8 atataataaagactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    |||||||||||||  ||||| ||||| | |||||| |||||||||    | |||| |||||||||||||||||||| ||||    
T  33604056 atataataaagaccacatacatcattaattgaatgtatctaaaaagtggatttttgcttatattagtgaccggagggtgta 33604136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 46906922 - 46906862
Alignment:
Q  22 gcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggag 82  Q
    |||||| |||||||||||||||||||||||   | | |||| |||||| ||||||||||||    
T  46906922 gcatacatcatttaatgaatgaatctaaaatatagatttttgcttataatagtgaccggag 46906862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 48022670 - 48022590
Alignment:
Q  8 atataataaagactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    |||||||||||||  ||||| ||||| | |||||| |||||||||    | |||| |||||||||||||||||||| ||||    
T  48022670 atataataaagaccacatacatcattaattgaatgtatctaaaaagtggatttttgcttatattagtgaccggagggtgta 48022590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 4e-28; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 17087421 - 17087350
Alignment:
Q  17 agactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  17087421 agactacatacgtcatttaatgaatgaatctaaaaatcaaacttttgcttatattagtgaccggaggatgta 17087350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 9878973 - 9879055
Alignment:
Q  1 atgtagtatataataaagactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggagg 83  Q
    ||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  9878973 atgtagtctataataaagactacatacgttatttaatgaatgaatctaaaaatcaaacgtttgcttatattagtgaccggagg 9879055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 17087422 - 17087490
Alignment:
Q  18 gactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatg 86  Q
    |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  17087422 gactacatacgtcatttaatgaatgaatctaaaaatcaaacttttgcttatattagtgaccggaggatg 17087490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 42749121 - 42749050
Alignment:
Q  17 agactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  42749121 agactacatacatcatttaatgaatgaatctaaaaatcaaacttttgcttatattagtgaccggaggatgta 42749050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 92912 - 92977
Alignment:
Q  17 agactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggag 82  Q
    ||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||    
T  92912 agactacatacgtcatttaatgaataaatctaaaaatcaaacttttgcttatattagtgaccggag 92977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 23 - 83
Target Start/End: Original strand, 13029394 - 13029454
Alignment:
Q  23 catacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggagg 83  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  13029394 catacatcatttaatgaatgaatctaaaaatcaaacttttgcttatattagtgaccggagg 13029454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 14 - 88
Target Start/End: Complemental strand, 92912 - 92838
Alignment:
Q  14 taaagactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    |||||||| |||||||||||||| |||| |||||||||||||||||||| |||||||||||||| ||||| ||||    
T  92912 taaagactacatacgtcatttaacgaattaatctaaaaatcaaacttttgcttatattagtgacaggagggtgta 92838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 9878981 - 9878910
Alignment:
Q  17 agactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    ||||| ||||| | |||||||||||||||||||||||||||| ||| |||||||||||||||| ||| ||||    
T  9878981 agactacatacataatttaatgaatgaatctaaaaatcaaacatttgcttatattagtgaccgcagggtgta 9878910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 26 - 78
Target Start/End: Complemental strand, 9232591 - 9232538
Alignment:
Q  26 acgtcatttaatgaatgaat-ctaaaaatcaaacttttacttatattagtgacc 78  Q
    |||||||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  9232591 acgtcatttaatgaatgaattctaaaaatcaaacttttgcttatattagtgacc 9232538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 72
Target Start/End: Complemental strand, 13029387 - 13029338
Alignment:
Q  23 catacgtcatttaatgaatgaatctaaaaatcaaacttttacttatatta 72  Q
    ||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  13029387 catacatcatttaatgaatgaatctaaaaatcaaacttttgcttatatta 13029338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 24287844 - 24287780
Alignment:
Q  24 atacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    |||| |||||||||||||||||||||||  |||| |||| |||||| ||||||||||||| ||||    
T  24287844 atacatcatttaatgaatgaatctaaaatgcaaagttttgcttataatagtgaccggagggtgta 24287780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 33070231 - 33070160
Alignment:
Q  17 agactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    ||||| ||||| |||||||||||||||||||||||  |||| |||| ||||||  |||||||||||| ||||    
T  33070231 agactacatacatcatttaatgaatgaatctaaaatacaaagttttgcttataacagtgaccggagggtgta 33070160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 33070223 - 33070310
Alignment:
Q  1 atgtagtatataataaagactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    ||||||| ||||||||||||   ||||  |||| |||||||||||||||||  |||| |||| |||||| ||||||||||||| ||||    
T  33070223 atgtagtctataataaagaccatatacaccattaaatgaatgaatctaaaatgcaaaattttgcttataatagtgaccggagggtgta 33070310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 88
Target Start/End: Complemental strand, 40640332 - 40640273
Alignment:
Q  29 tcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    |||||||||||||||||||||||  |||| |||| |||||| ||||||||||||| ||||    
T  40640332 tcatttaatgaatgaatctaaaatacaaagttttgcttataatagtgaccggagggtgta 40640273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 88
Target Start/End: Complemental strand, 36916657 - 36916578
Alignment:
Q  9 tataataaagactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    |||||||||||||  |||  ||||| | ||||| |||||||||  |||| ||||||||||| ||||||||||| ||||||    
T  36916657 tataataaagactaaatatatcattaattgaataaatctaaaatgcaaaattttacttataatagtgaccggatgatgta 36916578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 88
Target Start/End: Complemental strand, 44319575 - 44319516
Alignment:
Q  29 tcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    ||||||||| |||||||||||||    ||||||| |||||| ||||||||||||||||||    
T  44319575 tcatttaataaatgaatctaaaatgttaacttttgcttataatagtgaccggaggatgta 44319516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 14700329 - 14700379
Alignment:
Q  31 atttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccgga 81  Q
    ||||||| |||||||||||||  |||| ||||||||||| |||||||||||    
T  14700329 atttaataaatgaatctaaaatacaaaattttacttataatagtgaccgga 14700379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 1739645 - 1739710
Alignment:
Q  23 catacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    ||||| ||||| | |||||| |||||||||  ||| |||| |||||||||||||||||||| ||||    
T  1739645 catacatcattaattgaatgtatctaaaaagtaaatttttgcttatattagtgaccggagggtgta 1739710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 13080157 - 13080120
Alignment:
Q  14 taaagactgcatacgtcatttaatgaatgaatctaaaa 51  Q
    |||||||| ||||| |||||||||||||||||||||||    
T  13080157 taaagactacatacatcatttaatgaatgaatctaaaa 13080120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 13211319 - 13211384
Alignment:
Q  23 catacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    ||||| ||||| | |||||| |||||||||  | | |||||||||||||| |||||||||||||||    
T  13211319 catacatcattaattgaatgtatctaaaaaatagatttttacttatattaatgaccggaggatgta 13211384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 88
Target Start/End: Complemental strand, 14381314 - 14381233
Alignment:
Q  7 tatataataaagactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    ||||||||||||||  ||||| ||||| | |||||| |||||||||    | |||| |||||||||||||||||||| ||||    
T  14381314 tatataataaagaccacatacatcattaattgaatgtatctaaaaagtggatttttgcttatattagtgaccggagggtgta 14381233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 78
Target Start/End: Original strand, 34326311 - 34326380
Alignment:
Q  9 tataataaagactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgacc 78  Q
    |||||||||||||  |||| ||||| | ||||||||| |||||  |||| ||||||||||| ||||||||    
T  34326311 tataataaagactatatacatcattaattgaatgaatgtaaaatgcaaaattttacttataatagtgacc 34326380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 2296533 - 2296469
Alignment:
Q  24 atacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    |||| |||||||||||||||||||||||   ||| |||| |||||| || ||| |||||||||||    
T  2296533 atacatcatttaatgaatgaatctaaaatgtaaaattttgcttataataatgatcggaggatgta 2296469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 2382645 - 2382581
Alignment:
Q  24 atacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    |||| ||||||||||||||||||| |||  |||| ||||  ||||| ||||||| ||||||||||    
T  2382645 atacatcatttaatgaatgaatctgaaatacaaagttttgtttataatagtgactggaggatgta 2382581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 85
Target Start/End: Original strand, 7258679 - 7258727
Alignment:
Q  37 tgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggat 85  Q
    |||||||||||||||   ||| ||||||||||| |||||||||||||||    
T  7258679 tgaatgaatctaaaatgtaaaattttacttataatagtgaccggaggat 7258727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 9056086 - 9056166
Alignment:
Q  8 atataataaagactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    |||||||||||||  ||||| ||||| | | |||| |||||||||   || |||| |||||||||||||||||||| ||||    
T  9056086 atataataaagaccacatacatcattaattaaatgtatctaaaaagtgaatttttgcttatattagtgaccggagggtgta 9056166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 88
Target Start/End: Original strand, 15037836 - 15037896
Alignment:
Q  29 tcatttaatgaatgaatctaaaaatc-aaacttttacttatattagtgaccggaggatgta 88  Q
    ||||||| |||||||| |||||||   ||| ||||||||||| ||||||||||||||||||    
T  15037836 tcatttattgaatgaacctaaaaaaataaaattttacttataatagtgaccggaggatgta 15037896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 83
Target Start/End: Original strand, 24820377 - 24820437
Alignment:
Q  23 catacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggagg 83  Q
    ||||| ||||||| ||||||||||||||||   || |||| |||||| |||||||||||||    
T  24820377 catacatcatttattgaatgaatctaaaaagagaatttttgcttataatagtgaccggagg 24820437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 83
Target Start/End: Complemental strand, 28882724 - 28882664
Alignment:
Q  23 catacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggagg 83  Q
    ||||| ||||||| ||||||||||||||||  | |||||| || ||| |||||||||||||    
T  28882724 catacatcatttattgaatgaatctaaaaagtagacttttgctcataatagtgaccggagg 28882664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 40098825 - 40098905
Alignment:
Q  8 atataataaagactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    |||||||||||||  ||||| ||||| | |||||| |||||||||    | |||| |||||||||||||||||||| ||||    
T  40098825 atataataaagaccacatacatcattaattgaatgtatctaaaaagtggatttttgcttatattagtgaccggagggtgta 40098905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 40470500 - 40470412
Alignment:
Q  1 atgtagtatataataaagactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgtag 89  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||| ||| |||||    
T  40470500 atgtagtctataataaagactacatacgtcatttaatgaatgaatctaaaaattaaatttttgcttatattagtgaccgaagggtgtag 40470412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 40470492 - 40470563
Alignment:
Q  17 agactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  40470492 agactacatacgtcatttaatgaatgaatctaaaaatcaaacttttgcttatattagtgaccggagggtgta 40470563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 22456260 - 22456325
Alignment:
Q  23 catacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    ||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||| ||||    
T  22456260 catacgtcatttaatgaatgaatctaaaaatcaaatttttgctgatattagtgaccggagggtgta 22456325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 10 - 83
Target Start/End: Original strand, 30578289 - 30578362
Alignment:
Q  10 ataataaagactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggagg 83  Q
    ||||||||||||| |||| |||||||||||||||||||||||  |||| |||| |||||| ||||||| |||||    
T  30578289 ataataaagactgtatacatcatttaatgaatgaatctaaaatacaaagttttgcttataatagtgacaggagg 30578362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 88
Target Start/End: Original strand, 26143537 - 26143593
Alignment:
Q  32 tttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    |||||||||||||| ||||||||||||||||  ||||||||||||||||||| ||||    
T  26143537 tttaatgaatgaatttaaaaatcaaacttttgtttatattagtgaccggagggtgta 26143593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 611648 - 611587
Alignment:
Q  17 agactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgacc 78  Q
    ||||| ||||| ||||||| ||||| |||||||||| |||||||||||||||| ||||||||    
T  611648 agactacatacatcatttattgaattaatctaaaaaacaaacttttacttataatagtgacc 611587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 17109332 - 17109264
Alignment:
Q  15 aaagactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggagg 83  Q
    ||||||| ||||||||||||||||||| ||||||||||| ||| |||| |||||||   ||||||||||    
T  17109332 aaagactacatacgtcatttaatgaattaatctaaaaattaaatttttgcttatatccatgaccggagg 17109264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 88
Target Start/End: Complemental strand, 43818916 - 43818857
Alignment:
Q  29 tcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    |||||||||||||||||||||||  |||| |||| |||||| ||||||||||||| ||||    
T  43818916 tcatttaatgaatgaatctaaaatgcaaaattttgcttatagtagtgaccggagggtgta 43818857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 10 - 88
Target Start/End: Original strand, 54595857 - 54595934
Alignment:
Q  10 ataataaagactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    |||||||||||   |||| ||||||||||||||||||| ||||| | | ||||||||||| ||||||||||||| ||||    
T  54595857 ataataaagacgatatacatcatttaatgaatgaatct-aaaattatatttttacttataatagtgaccggagggtgta 54595934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 21217227 - 21217163
Alignment:
Q  22 gcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatg 86  Q
    |||||| |||||||||||||||||||||||   | | |||| |||||| ||||||||||||||||    
T  21217227 gcatacatcatttaatgaatgaatctaaaatgtagatttttgcttataatagtgaccggaggatg 21217163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 36566721 - 36566773
Alignment:
Q  29 tcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccgga 81  Q
    ||||||| ||||||||||||||||  |||||||| |||||| |||||||||||    
T  36566721 tcatttattgaatgaatctaaaaagaaaacttttgcttataatagtgaccgga 36566773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 43818939 - 43818991
Alignment:
Q  29 tcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccgga 81  Q
    |||||||||||||||||||||||  |||| |||| |||||| |||||||||||    
T  43818939 tcatttaatgaatgaatctaaaatgcaaagttttgcttataatagtgaccgga 43818991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 88
Target Start/End: Original strand, 331864 - 331943
Alignment:
Q  9 tataataaagactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    ||||||||||| |  |||| |||||||||||||||||||||||    || |||| |||||| ||||||||||||| ||||    
T  331864 tataataaagattatatacatcatttaatgaatgaatctaaaatgttaatttttgcttataatagtgaccggagggtgta 331943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 76
Target Start/End: Original strand, 17109332 - 17109371
Alignment:
Q  37 tgaatgaatctaaaaatcaaacttttacttatattagtga 76  Q
    ||||||||||||||||||||||||||  ||||||||||||    
T  17109332 tgaatgaatctaaaaatcaaacttttgtttatattagtga 17109371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 89
Target Start/End: Complemental strand, 26143540 - 26143465
Alignment:
Q  14 taaagactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgtag 89  Q
    |||||||| ||||| | ||||||||||||||  |||||||| || ||||| |||||||||| | |||||| |||||    
T  26143540 taaagactacatacataatttaatgaatgaacttaaaaatctaatttttatttatattagtaatcggagggtgtag 26143465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 76
Target Start/End: Original strand, 36344440 - 36344507
Alignment:
Q  10 ataataaagactgcatacgtcatttaatgaatgaatctaaaa-atcaaacttttacttatattagtga 76  Q
    |||||||||||  ||||| ||||||||||||||||||||||| |  ||| ||||||||||| ||||||    
T  36344440 ataataaagaccacatacatcatttaatgaatgaatctaaaatacaaaatttttacttataatagtga 36344507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 88
Target Start/End: Complemental strand, 38677619 - 38677560
Alignment:
Q  29 tcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    ||||| |||||||||||||||||   |||||||| |||||| ||||||||||||| ||||    
T  38677619 tcattaaatgaatgaatctaaaatgtaaacttttgcttataatagtgaccggagggtgta 38677560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 79
Target Start/End: Complemental strand, 336120 - 336070
Alignment:
Q  29 tcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccg 79  Q
    ||||| |||||||||||||||||   ||||||||||||||| |||||||||    
T  336120 tcattaaatgaatgaatctaaaatgtaaacttttacttataatagtgaccg 336070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 51
Target Start/End: Original strand, 4980339 - 4980381
Alignment:
Q  9 tataataaagactgcatacgtcatttaatgaatgaatctaaaa 51  Q
    ||||||||||||| ||||| ||||||| |||||||||||||||    
T  4980339 tataataaagactacatacatcatttattgaatgaatctaaaa 4980381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 36571455 - 36571513
Alignment:
Q  24 atacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggag 82  Q
    |||| ||||||||||||||||  ||||||   |||||||||||||| ||||||||||||    
T  36571455 atacatcatttaatgaatgaacttaaaaagtcaacttttacttataatagtgaccggag 36571513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 51
Target Start/End: Original strand, 23444340 - 23444381
Alignment:
Q  10 ataataaagactgcatacgtcatttaatgaatgaatctaaaa 51  Q
    ||||||||||||  |||| |||||||||||||||||||||||    
T  23444340 ataataaagactatatacatcatttaatgaatgaatctaaaa 23444381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 26121619 - 26121684
Alignment:
Q  23 catacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    ||||| ||||||||||||| |||||||||  |||| |||| | |||| ||||||||||||| ||||    
T  26121619 catacatcatttaatgaataaatctaaaatgcaaaattttccctataatagtgaccggagggtgta 26121684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 26244460 - 26244525
Alignment:
Q  23 catacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    ||||| ||||||||||||| |||||||||  |||| |||| | |||| ||||||||||||| ||||    
T  26244460 catacatcatttaatgaataaatctaaaatgcaaaattttgcctataatagtgaccggagggtgta 26244525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 39836945 - 39836998
Alignment:
Q  23 catacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtga 76  Q
    ||||| ||||||| ||||||||||||||||  ||||||||| ||||| ||||||    
T  39836945 catacatcatttattgaatgaatctaaaaagtaaacttttatttataatagtga 39836998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 47334723 - 47334788
Alignment:
Q  24 atacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgtag 89  Q
    |||| |||||||||||||||||||||||   ||| ||||||||||  || |||||||||| |||||    
T  47334723 atacatcatttaatgaatgaatctaaaatgtaaaattttacttatgataatgaccggagggtgtag 47334788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 88
Target Start/End: Complemental strand, 48191775 - 48191710
Alignment:
Q  23 catacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    ||||| |||||||||||||||||||||||    || ||||  ||||| ||||||||||||||||||    
T  48191775 catacatcatttaatgaatgaatctaaaatgttaatttttgtttataatagtgaccggaggatgta 48191710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 37)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 20019822 - 20019893
Alignment:
Q  17 agactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  20019822 agactacatacgtcatttaatgaatgaatctaaaaatcaaacttttgcttatattagtgaccggagggtgta 20019893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 4 - 94
Target Start/End: Complemental strand, 25772234 - 25772143
Alignment:
Q  4 tagtatataataaagactgcatacgt-catttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgtaggtaac 94  Q
    |||| ||||||||||||| ||||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||| ||||    
T  25772234 tagtctataataaagactacatacgttcatttaatgaatgaatctaaaaatcaaatttttgcttatattagtgaccggagggtgtagttaac 25772143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 27314533 - 27314620
Alignment:
Q  1 atgtagtatataataaagactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    ||||||| ||||||||||||| |||||||||||||||||||||||||||||  ||||||||| |||||||| ||||||||||| ||||    
T  27314533 atgtagtctataataaagactacatacgtcatttaatgaatgaatctaaaatccaaacttttgcttatatttgtgaccggagggtgta 27314620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 1996913 - 1996841
Alignment:
Q  17 agactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgtag 89  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||    
T  1996913 agactacatacgtcatttaatgaatgaatctaaaaatcaaatttttgcttatattagtgaccggagggtgtag 1996841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 1996905 - 1996993
Alignment:
Q  1 atgtagtatataataaa-gactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    ||||||| ||||||||| | || ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||    
T  1996905 atgtagtctataataaaagtctacatacgtcatttaatgaatgaatctaaaaatcaaatttttgcttatattagtgaccggagggtgta 1996993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 7725027 - 7725099
Alignment:
Q  16 aagactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||| ||||    
T  7725027 aagactacatacgtcatttaatgaatgaacctaaaaatcaaacttttgcttatattaatgaccggagggtgta 7725099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 25772236 - 25772300
Alignment:
Q  24 atacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  25772236 atacgttatttaatgaatgaatctaaaaatcaaacttttgcttatattagtgaccggagggtgta 25772300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 7725026 - 7724955
Alignment:
Q  17 agactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||| ||||    
T  7725026 agactacatacgtcatttaatgaatgaacctaaaaatcaaacttttgcttatattaatgaccggagggtgta 7724955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 27314541 - 27314470
Alignment:
Q  17 agactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    ||||| |||||||||||||||||||||||||||||| |||| |||| |||||||||||||||||||| ||||    
T  27314541 agactacatacgtcatttaatgaatgaatctaaaaaccaaatttttgcttatattagtgaccggagggtgta 27314470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 13 - 88
Target Start/End: Original strand, 34867621 - 34867696
Alignment:
Q  13 ataaagactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    ||||||||||||||| ||||||||| |||||||||||||  |||| |||||||||||||||||||||||| |||||    
T  34867621 ataaagactgcatacatcatttaataaatgaatctaaaatgcaaagttttacttatattagtgaccggagaatgta 34867696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 291878 - 291943
Alignment:
Q  23 catacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||||||| |||||||| ||||    
T  291878 catacgtcatttaatgaatgaatctaaaaatcaaacttttgtttatattagtaaccggagggtgta 291943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 16899761 - 16899694
Alignment:
Q  9 tataataaagactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtga 76  Q
    ||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||  ||||||||||||    
T  16899761 tataatatagactacatacgtcatttaataaatgaatctaaaaatcaaacttttgtttatattagtga 16899694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 23 - 88
Target Start/End: Complemental strand, 291850 - 291785
Alignment:
Q  23 catacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    ||||||||||||||||||||||| ||||||||||||||||  |||||||| |||| ||||||||||    
T  291850 catacgtcatttaatgaatgaatgtaaaaatcaaacttttgtttatattaatgacaggaggatgta 291785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 16899768 - 16899823
Alignment:
Q  24 atacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccg 79  Q
    |||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  16899768 atacatcatttaatgaatgaacctaaaaatcaaacttttgcttatattagtgaccg 16899823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 23 - 89
Target Start/End: Original strand, 29232884 - 29232950
Alignment:
Q  23 catacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgtag 89  Q
    ||||| ||||||||||||| |||||||||||||||  ||| ||||||||| |||||||||| |||||    
T  29232884 catacatcatttaatgaataaatctaaaaatcaaatctttgcttatattaatgaccggagggtgtag 29232950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 26300186 - 26300106
Alignment:
Q  8 atataataaagactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    |||||||||||||  ||||| ||||| | |||||| |||||||||  ||| |||| |||||||||||||||||||| ||||    
T  26300186 atataataaagaccacatacatcattaattgaatgtatctaaaaagtaaatttttgcttatattagtgaccggagggtgta 26300106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 88
Target Start/End: Original strand, 1100123 - 1100202
Alignment:
Q  9 tataataaagactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    ||||||||||||| ||||| ||||||||||||| |||||||||  |||| |||| |||||| || | |||||||| ||||    
T  1100123 tataataaagactacatacatcatttaatgaattaatctaaaatgcaaagttttgcttataataattaccggagggtgta 1100202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 91
Target Start/End: Original strand, 19531366 - 19531449
Alignment:
Q  8 atataataaagactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgtaggt 91  Q
    |||||||||||||  ||||| ||||| | |||||| |||||||||   || |||| ||||||||||||| ||||||||||||||    
T  19531366 atataataaagaccacatacatcattaattgaatgtatctaaaaagtgaatttttgcttatattagtgatcggaggatgtaggt 19531449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 77
Target Start/End: Original strand, 39035458 - 39035521
Alignment:
Q  14 taaagactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgac 77  Q
    |||||||| ||||  | ||||||||||||||| ||||||||||| |||| ||||||||||||||    
T  39035458 taaagactacatatattatttaatgaatgaatttaaaaatcaaatttttgcttatattagtgac 39035521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 29 - 83
Target Start/End: Complemental strand, 40515281 - 40515227
Alignment:
Q  29 tcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggagg 83  Q
    ||||||| ||||||||||||||||   |||||||||||||| |||||||||||||    
T  40515281 tcatttattgaatgaatctaaaaagtcaacttttacttataatagtgaccggagg 40515227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 13311249 - 13311170
Alignment:
Q  8 atataataaagactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    |||||||||||||  ||||| ||||| | |||||| |||||||| | | |||||| |||||||||||||||||||| ||||    
T  13311249 atataataaagaccacatacatcattaattgaatgtatctaaaagt-agacttttgcttatattagtgaccggagggtgta 13311170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 83
Target Start/End: Original strand, 25792926 - 25792986
Alignment:
Q  23 catacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggagg 83  Q
    ||||| |||||||||||||||| |||||||  ||| |||| |||||| |||||||||||||    
T  25792926 catacatcatttaatgaatgaacctaaaaagtaaatttttgcttataatagtgaccggagg 25792986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 26300192 - 26300256
Alignment:
Q  24 atacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    |||| ||||| | |||||| |||||||||  ||| ||||||||||||||||||||||||| ||||    
T  26300192 atacatcattaattgaatgtatctaaaaagtaaaattttacttatattagtgaccggagggtgta 26300256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 35969194 - 35969274
Alignment:
Q  8 atataataaagactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    |||||||||||||| |||||  |||| | |||||| |||||||||   || |||||||||||||||||| |||| ||||||    
T  35969194 atataataaagactacatacaccattaattgaatgtatctaaaaagtgaatttttacttatattagtgatcggaagatgta 35969274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 37944677 - 37944597
Alignment:
Q  8 atataataaagactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    ||||||||||||   ||||| ||||| | |||||| |||||||||   || |||| |||||||||||||||||||||||||    
T  37944677 atataataaagatcacatacatcattaattgaatgtatctaaaaagtgaatttttgcttatattagtgaccggaggatgta 37944597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 88
Target Start/End: Complemental strand, 11172047 - 11171997
Alignment:
Q  37 tgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    |||||| |||||||||| ||| |||| |||||||||||||||||||||||||    
T  11172047 tgaatgtatctaaaaat-aaatttttgcttatattagtgaccggaggatgta 11171997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 88
Target Start/End: Complemental strand, 26141809 - 26141750
Alignment:
Q  29 tcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    ||||| |||||||||||||||||   |||||||| |||||| ||||||||||||| ||||    
T  26141809 tcattaaatgaatgaatctaaaatgtaaacttttgcttataatagtgaccggagggtgta 26141750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 88
Target Start/End: Complemental strand, 34867605 - 34867546
Alignment:
Q  29 tcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    |||||||||||||||||||||||  ||||  ||| |||||| |||||| |||||||||||    
T  34867605 tcatttaatgaatgaatctaaaatacaaaactttgcttataatagtgatcggaggatgta 34867546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 83
Target Start/End: Complemental strand, 42013897 - 42013822
Alignment:
Q  8 atataataaagactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggagg 83  Q
    |||||||||||||  ||||| ||||| | |||||| |||||||||   || |||| ||||||||||||||||||||    
T  42013897 atataataaagaccacatacatcattaattgaatgtatctaaaaagtgaatttttgcttatattagtgaccggagg 42013822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 1098701 - 1098767
Alignment:
Q  17 agactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggagg 83  Q
    ||||| ||||| | ||||| | ||||||||||||||  |||||||| |||||| |||||||||||||    
T  1098701 agactacatacattatttattaaatgaatctaaaaaataaacttttgcttataatagtgaccggagg 1098767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 1098688 - 1098635
Alignment:
Q  23 catacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtga 76  Q
    ||||| ||||||| ||||||||||||||||   |||||||||||||| ||||||    
T  1098688 catacatcatttattgaatgaatctaaaaagtcaacttttacttataatagtga 1098635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 43506174 - 43506239
Alignment:
Q  23 catacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    ||||| ||||||||||||||||||||||||   || |||| |||||| |||||||| |||| ||||    
T  43506174 catacatcatttaatgaatgaatctaaaaagtgaaattttgcttataatagtgaccagagggtgta 43506239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 12646585 - 12646649
Alignment:
Q  24 atacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    |||| ||||||| | ||||||||||||||  ||| |||| ||||||||  |||||||||||||||    
T  12646585 atacatcatttattaaatgaatctaaaaagtaaatttttgcttatatttatgaccggaggatgta 12646649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 17625701 - 17625638
Alignment:
Q  22 gcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatg 86  Q
    |||||| |||||||||||||||||||||||   | | |||| |||||| ||||||||||||||||    
T  17625701 gcatacatcatttaatgaatgaatctaaaatgtagattttt-cttataatagtgaccggaggatg 17625638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 23914916 - 23914836
Alignment:
Q  8 atataataaagactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    |||||||||||||  ||||| ||||| | |||||| |||||||||    | |||| |||||||||||||||||||| ||||    
T  23914916 atataataaagaccacatacatcattaattgaatgtatctaaaaagtggatttttgcttatattagtgaccggagggtgta 23914836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 81
Target Start/End: Complemental strand, 25358112 - 25358060
Alignment:
Q  29 tcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccgga 81  Q
    ||||||| ||||||||||| ||||  ||| ||||||||||| |||||||||||    
T  25358112 tcatttattgaatgaatcttaaaaataaatttttacttataatagtgaccgga 25358060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 31963585 - 31963521
Alignment:
Q  17 agactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccgga 81  Q
    ||||| ||||| ||||||||| |||||||||||||  |||| ||||  ||||| |||||||||||    
T  31963585 agactacatacatcatttaataaatgaatctaaaatgcaaaattttgtttataatagtgaccgga 31963521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 9 - 88
Target Start/End: Original strand, 20057172 - 20057251
Alignment:
Q  9 tataataaagactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    ||||||||||||| |||||||||||||||| |||||||||||| ||||| |||| ||||||||| |||||||||| ||||    
T  20057172 tataataaagactacatacgtcatttaatggatgaatctaaaagtcaaatttttgcttatattaatgaccggagggtgta 20057251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 25899920 - 25899833
Alignment:
Q  1 atgtagtatataataaagactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    ||||||| ||||||||||||| ||||||||||||||| ||| ||| ||||||||||| |||| ||||||||||||| | |||||||||    
T  25899920 atgtagtttataataaagactacatacgtcatttaataaataaatttaaaaatcaaatttttgcttatattagtgatcagaggatgta 25899833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 23992450 - 23992516
Alignment:
Q  17 agactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggagg 83  Q
    ||||| |||||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||||    
T  23992450 agactacatacgtcatttaatgaacgaatctaaaaatcaaatttttacttatattagtgatcggagg 23992516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 23992458 - 23992377
Alignment:
Q  1 atgtagtatataataaagactgcatac-gtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccgga 81  Q
    ||||||| |||||||||||||  |||| |||||||||||||||||| ||||||||||||||||  |||||||||||| ||||    
T  23992458 atgtagtctataataaagactatatacagtcatttaatgaatgaatttaaaaatcaaacttttgtttatattagtgatcgga 23992377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 25899918 - 25899971
Alignment:
Q  23 catacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtga 76  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  25899918 catacgtcatttaataaataaatctaaaaatcaaacttttacttatattagtga 25899971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 88
Target Start/End: Original strand, 4817063 - 4817136
Alignment:
Q  14 taaagactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    |||||||| ||||||| ||||||| || ||||||||||||||||||||| ||||||||| |||| ||||| ||||    
T  4817063 taaagactacatacgtaatttaataaa-gaatctaaaaatcaaacttttgcttatattaatgactggagggtgta 4817136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 20057166 - 20057113
Alignment:
Q  23 catacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtga 76  Q
    ||||||||||||||||||| ||| |||||||||||||||| || ||||||||||    
T  20057166 catacgtcatttaatgaatcaatttaaaaatcaaacttttgctcatattagtga 20057113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 81
Target Start/End: Complemental strand, 4817054 - 4816988
Alignment:
Q  14 taaagactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccgga 81  Q
    |||||||| ||||||| |||||||||| |||||||||||| ||||||||  |||||||||||| ||||    
T  4817054 taaagactacatacgtaatttaatgaa-gaatctaaaaattaaacttttgtttatattagtgatcgga 4816988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 12242309 - 12242385
Alignment:
Q  12 aataaagactgcatacgtcatttaatgaatgaatctaaaa-atcaaacttttacttatattagtgaccggaggatgta 88  Q
    |||||||||| ||||| ||||||||||||||||||||||| ||  || |||| |||||||| ||||||||||| ||||    
T  12242309 aataaagactacatacatcatttaatgaatgaatctaaaatatggaa-ttttgcttatatttgtgaccggagggtgta 12242385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 31102029 - 31102094
Alignment:
Q  23 catacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    ||||| |||||||||||||||||||||||  ||||||||| |||||| || ||| |||||| ||||    
T  31102029 catacatcatttaatgaatgaatctaaaatgcaaacttttgcttataataatgatcggagggtgta 31102094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 88
Target Start/End: Complemental strand, 45473137 - 45473072
Alignment:
Q  23 catacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    ||||| ||||||||||||||||||||||| |  || ||||| ||||| || |||||||||||||||    
T  45473137 catacatcatttaatgaatgaatctaaaattttaatttttaattataataatgaccggaggatgta 45473072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 3098205 - 3098269
Alignment:
Q  22 gcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatg 86  Q
    |||||| |||||||||||||||||||||||   | | |||| |||||| ||||||||||||||||    
T  3098205 gcatacatcatttaatgaatgaatctaaaatgtagatttttgcttataatagtgaccggaggatg 3098269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 3123972 - 3124048
Alignment:
Q  12 aataaagactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    ||||||| || ||||| ||||||| |||||||||||||||    || |||| |||||||| ||||||||||||||||    
T  3123972 aataaagtctacatacatcatttattgaatgaatctaaaacatgaatttttgcttatatttgtgaccggaggatgta 3124048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 5574175 - 5574255
Alignment:
Q  8 atataataaagactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    |||||||||||||  ||||| ||||| | |||||| |||||||||  | | |||| |||||||||||||||||||| ||||    
T  5574175 atataataaagaccacatacatcattaattgaatgtatctaaaaagtagatttttgcttatattagtgaccggagggtgta 5574255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 25270935 - 25270999
Alignment:
Q  22 gcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatg 86  Q
    |||||| |||||||||||||||||||||||   | | |||| |||||| ||||||||||||||||    
T  25270935 gcatacatcatttaatgaatgaatctaaaatgtagatttttgcttataatagtgaccggaggatg 25270999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 88
Target Start/End: Original strand, 26234110 - 26234169
Alignment:
Q  29 tcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    ||||| |||||||||||||||||   |||||||| |||||| ||||||||||||| ||||    
T  26234110 tcattaaatgaatgaatctaaaatgtaaacttttgcttataatagtgaccggagggtgta 26234169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 88
Target Start/End: Complemental strand, 41805348 - 41805269
Alignment:
Q  9 tataataaagactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    |||||||||||||  |||| ||||| | ||||||||| |||||  |||| |||| |||||| ||||||||||||| ||||    
T  41805348 tataataaagactatatacatcattaattgaatgaatttaaaatgcaaaattttgcttataatagtgaccggagggtgta 41805269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 44274615 - 44274681
Alignment:
Q  17 agactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggagg 83  Q
    ||||| ||||| ||||||| ||||||||||||||||   || |||| ||||||| ||||||||||||    
T  44274615 agactacatacatcatttattgaatgaatctaaaaagtgaatttttgcttatatcagtgaccggagg 44274681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 88
Target Start/End: Complemental strand, 9431257 - 9431192
Alignment:
Q  23 catacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    ||||| ||||| |||||||||| ||||||   ||  ||||||||||||||||||||||||| ||||    
T  9431257 catacatcattaaatgaatgaacctaaaatgtaattttttacttatattagtgaccggagggtgta 9431192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 11726575 - 11726640
Alignment:
Q  23 catacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    ||||| |||||||||||||||||||||||    || |||| |||||| ||||||| ||||||||||    
T  11726575 catacatcatttaatgaatgaatctaaaatgttaatttttgcttataatagtgactggaggatgta 11726640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 13988373 - 13988436
Alignment:
Q  24 atacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    |||| ||||||||||||||||||||||| |   | ||||||||||| ||||||||||||| ||||    
T  13988373 atacatcatttaatgaatgaatctaaaa-tgttagttttacttataatagtgaccggagggtgta 13988436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 30902338 - 30902417
Alignment:
Q  8 atataataaagactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    |||||||||||||  ||||  ||||| | |||||| |||||||||  ||| |||| ||||||||||||| |||||||||||    
T  30902338 atataataaagaccacatatatcattaattgaatgtatctaaaaagtaaatttttgcttatattagtga-cggaggatgta 30902417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 90
Target Start/End: Original strand, 31582374 - 31582430
Alignment:
Q  34 taatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgtagg 90  Q
    ||||||||||||||||||    |||||||||||||||||||||  ||||| ||||||    
T  31582374 taatgaatgaatctaaaatattaacttttacttatattagtgattggagggtgtagg 31582430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 41056967 - 41057031
Alignment:
Q  22 gcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatg 86  Q
    |||||| |||||||||||||||||||||||   | | |||| |||||| |||||||||| |||||    
T  41056967 gcatacatcatttaatgaatgaatctaaaatgtagatttttgcttataatagtgaccggcggatg 41057031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 83
Target Start/End: Original strand, 41824340 - 41824400
Alignment:
Q  23 catacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggagg 83  Q
    ||||| ||||||| |||||||| |||||||   || ||||||||||| |||||||||||||    
T  41824340 catacatcatttattgaatgaacctaaaaagtcaatttttacttatagtagtgaccggagg 41824400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 32254879 - 32254967
Alignment:
Q  1 atgtagtatataataaagactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgtag 89  Q
    ||||||| ||||||||||||  ||||| |||||||||||||||||||||||    ||||||| |||||| |||||| |||||| |||||    
T  32254879 atgtagtctataataaagaccacatacatcatttaatgaatgaatctaaaatattaacttttgcttataatagtgatcggagggtgtag 32254967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 91
Target Start/End: Complemental strand, 13462993 - 13462925
Alignment:
Q  23 catacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgtaggt 91  Q
    ||||| ||||||| |||||| ||||||||| ||||||||| ||| || ||||||||||||| |||||||    
T  13462993 catacatcatttattgaatggatctaaaaagcaaacttttgcttctaatagtgaccggagggtgtaggt 13462925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 14310601 - 14310666
Alignment:
Q  23 catacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    ||||| ||||| |||||||||||||||||  || | |||| |||||||||||||||||||| ||||    
T  14310601 catacatcattaaatgaatgaatctaaaatacagatttttgcttatattagtgaccggagggtgta 14310666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 28555006 - 28554941
Alignment:
Q  24 atacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgtag 89  Q
    |||| ||||| |||||||||| ||||||   ||| ||||||||||||||||||| |||||||||||    
T  28555006 atacatcattaaatgaatgaacctaaaatgtaaatttttacttatattagtgactggaggatgtag 28554941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 18097142 - 18097055
Alignment:
Q  1 atgtagtatataataaagactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    |||| ||||||||||||||||   | | ||||| ||| |||||||||||||   |||||||| |||||| ||||||||||||| ||||    
T  18097142 atgtggtatataataaagactatgtgcatcattaaataaatgaatctaaaatgtaaacttttgcttataatagtgaccggagggtgta 18097055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 88
Target Start/End: Original strand, 31398312 - 31398371
Alignment:
Q  29 tcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    ||||| |||||||||||||||||   |||||||| |||||| ||||||||||||| ||||    
T  31398312 tcattaaatgaatgaatctaaaatgtaaacttttgcttataatagtgaccggagggtgta 31398371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 14173456 - 14173395
Alignment:
Q  17 agactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgacc 78  Q
    ||||| ||||| ||||||| ||||||||||||||||| | | |||| |||||| ||||||||    
T  14173456 agactacatacttcatttattgaatgaatctaaaaattagatttttgcttataatagtgacc 14173395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 14177992 - 14177931
Alignment:
Q  17 agactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgacc 78  Q
    ||||| ||||| ||||||| ||||||||||||||||| | | |||| |||||| ||||||||    
T  14177992 agactacatacttcatttattgaatgaatctaaaaattagatttttgcttataatagtgacc 14177931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 81
Target Start/End: Original strand, 21506528 - 21506601
Alignment:
Q  8 atataataaagactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccgga 81  Q
    ||||||||||||   ||||| ||||| | |||||| |||||||||| ||| |||| ||||||||| ||||||||    
T  21506528 atataataaagatcacatacatcattaattgaatgtatctaaaaattaaatttttgcttatattaatgaccgga 21506601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 88
Target Start/End: Original strand, 17268126 - 17268158
Alignment:
Q  56 aacttttacttatattagtgaccggaggatgta 88  Q
    |||||||||||||||||||||||||| ||||||    
T  17268126 aacttttacttatattagtgaccggatgatgta 17268158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 18491749 - 18491801
Alignment:
Q  31 atttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggagg 83  Q
    ||||| |||||||| |||||||   |||||||||||||| |||||||||||||    
T  18491749 atttattgaatgaacctaaaaagtcaacttttacttataatagtgaccggagg 18491801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 83
Target Start/End: Original strand, 30460677 - 30460753
Alignment:
Q  7 tatataataaagactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggagg 83  Q
    ||||||||||||||  ||||| ||||| | |||||  |||||||||  ||| |||| |||||||||||||| |||||    
T  30460677 tatataataaagaccacatacatcattaattgaatctatctaaaaagtaaatttttgcttatattagtgactggagg 30460753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 83
Target Start/End: Original strand, 31632187 - 31632247
Alignment:
Q  23 catacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggagg 83  Q
    ||||| ||||||| | |||||| |||||||   |||||||||||||| |||||||||||||    
T  31632187 catacatcatttattaaatgaacctaaaaagtcaacttttacttataatagtgaccggagg 31632247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1640 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold1640
Description:

Target: scaffold1640; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 1195 - 1282
Alignment:
Q  1 atgtagtatataataaagactgcatacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    ||||||| ||||||||||||| ||||  |||||   ||||||||| |||||    |||||||||||||| ||||||||||||||||||    
T  1195 atgtagtctataataaagactacatagatcattacttgaatgaatataaaatgataacttttacttataatagtgaccggaggatgta 1282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 120225 - 120290
Alignment:
Q  23 catacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggaggatgta 88  Q
    ||||| ||||| | |||||| |||||||||  ||| |||| |||||||||||||||||||| ||||    
T  120225 catacatcattaattgaatgtatctaaaaagtaaatttttgcttatattagtgaccggagggtgta 120290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0149 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0149
Description:

Target: scaffold0149; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 83
Target Start/End: Original strand, 24686 - 24746
Alignment:
Q  23 catacgtcatttaatgaatgaatctaaaaatcaaacttttacttatattagtgaccggagg 83  Q
    ||||| |||||||||||||||||||||||    || |||| |||||| |||||||||||||    
T  24686 catacatcatttaatgaatgaatctaaaatattaatttttgcttataatagtgaccggagg 24746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University