View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11472_low_34 (Length: 238)

Name: NF11472_low_34
Description: NF11472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11472_low_34
NF11472_low_34
[»] chr1 (11 HSPs)
chr1 (2-227)||(17653203-17653426)
chr1 (3-199)||(47050352-47050544)
chr1 (16-104)||(29288999-29289087)
chr1 (3-118)||(14650438-14650553)
chr1 (3-118)||(14660229-14660344)
chr1 (26-194)||(17478575-17478739)
chr1 (3-106)||(16100909-16101013)
chr1 (26-227)||(263007-263204)
chr1 (58-124)||(17981719-17981786)
chr1 (57-106)||(19657319-19657369)
chr1 (59-106)||(16104423-16104471)
[»] chr6 (16 HSPs)
chr6 (2-227)||(22014132-22014354)
chr6 (3-133)||(28040866-28040996)
chr6 (3-199)||(25478096-25478288)
chr6 (16-128)||(17357688-17357801)
chr6 (16-128)||(27684201-27684314)
chr6 (16-128)||(27691520-27691633)
chr6 (23-183)||(15970279-15970439)
chr6 (3-106)||(33055801-33055905)
chr6 (3-106)||(33063280-33063384)
chr6 (23-118)||(6952403-6952498)
chr6 (23-133)||(27651185-27651295)
chr6 (3-118)||(27527406-27527531)
chr6 (32-118)||(9815053-9815140)
chr6 (28-133)||(16694059-16694165)
chr6 (50-128)||(13141996-13142075)
chr6 (32-106)||(30130534-30130609)
[»] chr2 (9 HSPs)
chr2 (2-227)||(44324240-44324462)
chr2 (3-133)||(45332826-45332956)
chr2 (16-128)||(31714048-31714161)
chr2 (16-128)||(39154633-39154746)
chr2 (23-133)||(808579-808689)
chr2 (26-118)||(4406347-4406440)
chr2 (33-118)||(9311064-9311150)
chr2 (50-106)||(10416155-10416212)
chr2 (32-106)||(4698095-4698170)
[»] chr4 (8 HSPs)
chr4 (3-199)||(27560975-27561167)
chr4 (3-118)||(4763405-4763521)
chr4 (43-133)||(51533841-51533930)
chr4 (43-133)||(18694128-18694217)
chr4 (32-117)||(27733593-27733678)
chr4 (23-123)||(5358535-5358635)
chr4 (26-128)||(54351775-54351876)
chr4 (23-133)||(11512701-11512813)
[»] scaffold0007 (1 HSPs)
scaffold0007 (26-227)||(60733-60929)
[»] chr3 (9 HSPs)
chr3 (3-199)||(19435171-19435363)
chr3 (2-118)||(28058369-28058486)
chr3 (2-118)||(28068794-28068911)
chr3 (3-117)||(6911242-6911357)
chr3 (3-118)||(28103980-28104096)
chr3 (32-123)||(17954693-17954784)
chr3 (60-121)||(23397923-23397984)
chr3 (59-133)||(9436001-9436076)
chr3 (50-106)||(5705490-5705547)
[»] chr5 (4 HSPs)
chr5 (2-133)||(5519373-5519504)
chr5 (2-133)||(42785652-42785783)
chr5 (32-133)||(15599016-15599117)
chr5 (26-116)||(27198198-27198289)
[»] chr8 (6 HSPs)
chr8 (3-133)||(18982584-18982714)
chr8 (2-133)||(4706552-4706683)
chr8 (23-133)||(26917241-26917350)
chr8 (23-123)||(28603022-28603122)
chr8 (57-122)||(26340387-26340452)
chr8 (23-118)||(15925123-15925219)
[»] scaffold0406 (1 HSPs)
scaffold0406 (3-199)||(3815-4007)
[»] scaffold0713 (1 HSPs)
scaffold0713 (16-118)||(892-995)
[»] scaffold0002 (3 HSPs)
scaffold0002 (26-134)||(412872-412980)
scaffold0002 (59-134)||(406869-406944)
scaffold0002 (26-123)||(424255-424352)
[»] scaffold0012 (2 HSPs)
scaffold0012 (144-227)||(233396-233479)
scaffold0012 (52-129)||(182811-182889)
[»] chr7 (4 HSPs)
chr7 (26-123)||(36264128-36264224)
chr7 (23-118)||(28803742-28803838)
chr7 (44-118)||(44060056-44060131)
chr7 (52-124)||(29466909-29466983)
[»] scaffold0438 (2 HSPs)
scaffold0438 (31-122)||(7563-7654)
scaffold0438 (57-122)||(10548-10613)
[»] scaffold0036 (1 HSPs)
scaffold0036 (26-115)||(31705-31792)


Alignment Details
Target: chr1 (Bit Score: 130; Significance: 2e-67; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 2 - 227
Target Start/End: Complemental strand, 17653426 - 17653203
Alignment:
Q  2 ggttactagcctcataagttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtctctcact 101  Q
    ||||||||||||  ||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  17653426 ggttactagccttgtaaattaaaaattagatttgagaagaataaataatcgtgcccttgtgtgtttcccttctagttggtggtggttgttgtctctcact 17653327  T
Q  102 aagtccttgtaacttactctttctttttctatannnnnnnnccagattttcaagcagttgggtagaaagctgctagtagactcgaagctcagcagtgtga 201  Q
    |||||||||  ||||||||||||| |||||||         |||||||||||||||| || |||||||||||||||||||||||||||||||| | || |    
T  17653326 aagtccttgcgacttactctttctctttctat--tttttttccagattttcaagcagctgagtagaaagctgctagtagactcgaagctcagcggcgtca 17653229  T
Q  202 cattttattggtaggcctccttgatg 227  Q
    |||||| |||||||||||||||||||    
T  17653228 cattttgttggtaggcctccttgatg 17653203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 3 - 199
Target Start/End: Complemental strand, 47050544 - 47050352
Alignment:
Q  3 gttactagcctcataagttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtctctcacta 102  Q
    |||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  47050544 gttactagccttgtaagttaaaaattagatttgagaaaaataaataatcgtgcccttgtgtgtttcccttctagttggtggtggttgttgtctctcacta 47050445  T
Q  103 agtccttgtaacttactctttctttttctatannnnnnnnccagattttcaagcagttgggtagaaagctgctagtagactcgaagctcagcagtgt 199  Q
    ||||||||| |||||||||||  ||||||||          ||||||||||||||| |  |||| ||||||||||||||||| ||| ||||| ||||    
T  47050444 agtccttgtgacttactcttttattttctat----ttttttcagattttcaagcagctaagtaggaagctgctagtagactcaaagttcagccgtgt 47050352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 16 - 104
Target Start/End: Complemental strand, 29289087 - 29288999
Alignment:
Q  16 taagttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtctctcactaag 104  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  29289087 taagttaaaaattagatttgagaaaaataaataatcgtgcccttgtgtgtttcccttctagttggtggtggttgttgtctctcactaag 29288999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 3 - 118
Target Start/End: Original strand, 14650438 - 14650553
Alignment:
Q  3 gttactagcctcataagttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtct-ctcact 101  Q
    |||||||||||  ||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| ||||||||||| |||||||||| ||||||    
T  14650438 gttactagccttgtaagttaaaaattagatttgaaaaaaa-aaataatcgtgcccttgtgtgtttcccttctagttggtggtggttgttgtctcctcact 14650536  T
Q  102 aagtccttgtaacttac 118  Q
    ||||| |||| ||||||    
T  14650537 aagtctttgtgacttac 14650553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 3 - 118
Target Start/End: Original strand, 14660229 - 14660344
Alignment:
Q  3 gttactagcctcataagttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtct-ctcact 101  Q
    |||||||||||  ||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| ||||||||||| |||||||||| ||||||    
T  14660229 gttactagccttgtaagttaaaaattagatttgaaaaaaa-aaataatcgtgcccttgtgtgtttcccttctagttggtggtggttgttgtctcctcact 14660327  T
Q  102 aagtccttgtaacttac 118  Q
    ||||| |||| ||||||    
T  14660328 aagtctttgtgacttac 14660344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 26 - 194
Target Start/End: Complemental strand, 17478739 - 17478575
Alignment:
Q  26 attagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtctctcactaagtccttgtaacttactctttct 125  Q
    |||||||||||||||  |||||| ||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||| ||     
T  17478739 attagatttgagaaag-taaataatcgtgcccttgtgcgtttcccttctagttggtggtggttgttgtctctcactaagtccttgtgacttactctctca 17478641  T
Q  126 ttttctatannnnnnnnccagattttcaagcagttgggtagaaagctgctagtagactcgaagctcagc 194  Q
    ||||||||         |||||||||||||||| |  || || |||||||||||||||| ||| |||||    
T  17478640 ttttctat---ttttttccagattttcaagcagctaagtggagagctgctagtagactcaaagttcagc 17478575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 3 - 106
Target Start/End: Original strand, 16100909 - 16101013
Alignment:
Q  3 gttactagcctcataagttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtct-ctcact 101  Q
    |||||||||||  | ||||||||||||||||||||||||||||||| ||||| || |||||||||||||| |||||||||||  ||||||||| ||||||    
T  16100909 gttactagccttgttagttaaaaattagatttgagaaaaataaataatcgtgaccatgtgtgtttcccttctagttggtggtgattgttgtctcctcact 16101008  T
Q  102 aagtc 106  Q
    |||||    
T  16101009 aagtc 16101013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 26 - 227
Target Start/End: Original strand, 263007 - 263204
Alignment:
Q  26 attagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtct-ctcactaagtccttgtaacttactctttc 124  Q
    |||||||| ||||||  ||| || |||||||| | | |||||||||| |||| |||||| |||||||||| ||||||||||||||||  |||||||||||    
T  263007 attagattcgagaaacttaattactcgtgcccatatatgtttcccttctagtcggtggtggttgttgtctcctcactaagtccttgtggcttactctttc 263106  T
Q  125 tttttctatannnnnnnnccagattttcaagcagttgggtagaaagctgctagtagactcgaagctcagcagtgtgacattttattggtaggcctccttg 224  Q
     ||||||||          ||||||  ||  ||| || |||||||||||||||||||||| | | |||||||||| ||||||| |||||||||| |||||    
T  263107 gttttctat----ttttttcagattcccacacagctgagtagaaagctgctagtagactcaaggttcagcagtgtcacatttt-ttggtaggccaccttg 263201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 124
Target Start/End: Complemental strand, 17981786 - 17981719
Alignment:
Q  58 ttgtgtgtttcccttttagttggtggtagttgttgtct-ctcactaagtccttgtaacttactctttc 124  Q
    ||||||||||||||| |||||||||||  ||||||||| |||| |||||| |||| ||||||||||||    
T  17981786 ttgtgtgtttcccttctagttggtggtgattgttgtctcctcaataagtctttgtgacttactctttc 17981719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 106
Target Start/End: Complemental strand, 19657369 - 19657319
Alignment:
Q  57 cttgtgtgtttcccttttagttggtggtagttgttgtct-ctcactaagtc 106  Q
    |||||||||||||||| |||||||||||  ||||||||| |||||||||||    
T  19657369 cttgtgtgtttcccttctagttggtggtgattgttgtctcctcactaagtc 19657319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 106
Target Start/End: Original strand, 16104423 - 16104471
Alignment:
Q  59 tgtgtgtttcccttttagttggtggtagttgttgtct-ctcactaagtc 106  Q
    |||||||||||||| |||||||||||  ||||||||| |||||||||||    
T  16104423 tgtgtgtttcccttctagttggtggtgattgttgtctcctcactaagtc 16104471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 122; Significance: 1e-62; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 2 - 227
Target Start/End: Original strand, 22014132 - 22014354
Alignment:
Q  2 ggttactagcctcataagttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtctctcact 101  Q
    ||||||||| ||  ||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  22014132 ggttactagtcttgtaaattaaaaattagatttgagaagaataaataatcgtgcccttgtgtgtttcccttctagttggtggtggttgttgtctctcact 22014231  T
Q  102 aagtccttgtaacttactctttctttttctatannnnnnnnccagattttcaagcagttgggtagaaagctgctagtagactcgaagctcagcagtgtga 201  Q
    |||||||||  ||||||||||||| |||||||         |||||||||||||||| || |||||||||||||||||||||||||||||| | | || |    
T  22014232 aagtccttgcgacttactctttctctttctat---ttttttccagattttcaagcagctgagtagaaagctgctagtagactcgaagctcaacggcgtca 22014328  T
Q  202 cattttattggtaggcctccttgatg 227  Q
    |||||| |||||||||||||||||||    
T  22014329 cattttgttggtaggcctccttgatg 22014354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 3 - 133
Target Start/End: Original strand, 28040866 - 28040996
Alignment:
Q  3 gttactagcctcataagttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtctctcacta 102  Q
    |||||||||||  ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||| |||||||||||||||||    
T  28040866 gttactagccttgtaagttaaaaattagatttgagaaaaataaataatcgtgtccttgtgtgtttcccttctagttggtggtggttgttgtctctcacta 28040965  T
Q  103 agtccttgtaacttactctttctttttctat 133  Q
    ||||||||| |||||||||||  ||||||||    
T  28040966 agtccttgtgacttactcttttattttctat 28040996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 3 - 199
Target Start/End: Complemental strand, 25478288 - 25478096
Alignment:
Q  3 gttactagcctcataagttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtctctcacta 102  Q
    |||||||||||  |||||||||||||| ||||||||||| |||| | ||||||||||||||||||||||| |||||||| || |||||||||||||||||    
T  25478288 gttactagccttgtaagttaaaaattatatttgagaaaagtaaaaaatcgtgcccttgtgtgtttcccttctagttggtagtggttgttgtctctcacta 25478189  T
Q  103 agtccttgtaacttactctttctttttctatannnnnnnnccagattttcaagcagttgggtagaaagctgctagtagactcgaagctcagcagtgt 199  Q
    ||||||||| |||||||||||  ||||||||          ||||||||||||||| |  |||| ||||||||||||||||| ||| ||||| ||||    
T  25478188 agtccttgtgacttactcttttattttctat----ttttttcagattttcaagcagctacgtaggaagctgctagtagactcaaagttcagccgtgt 25478096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 16 - 128
Target Start/End: Original strand, 17357688 - 17357801
Alignment:
Q  16 taagttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtct-ctcactaagtccttgtaac 114  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||| |||||| |||||||||| ||||||||||||||||  |    
T  17357688 taagttaaaaattagatttgagaaaaataaataatcgtgcccttgtgtgttttccttctagtcggtggtggttgttgtctcctcactaagtccttgtggc 17357787  T
Q  115 ttactctttctttt 128  Q
    ||||||||||||||    
T  17357788 ttactctttctttt 17357801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 16 - 128
Target Start/End: Original strand, 27684201 - 27684314
Alignment:
Q  16 taagttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtct-ctcactaagtccttgtaac 114  Q
    ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |||| |||||| |||||||||| ||||||||||||||||  |    
T  27684201 taagttaaaaattagatttgagaaaaataaataatcgtgctcttgtgtgtttcccttctagtcggtggtggttgttgtctcctcactaagtccttgtggc 27684300  T
Q  115 ttactctttctttt 128  Q
    ||||||||||||||    
T  27684301 ttactctttctttt 27684314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 16 - 128
Target Start/End: Original strand, 27691520 - 27691633
Alignment:
Q  16 taagttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtct-ctcactaagtccttgtaac 114  Q
    ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |||| |||||| |||||||||| ||||||||||||||||  |    
T  27691520 taagttaaaaattagatttgagaaaaataaataatcgtgctcttgtgtgtttcccttctagtcggtggtggttgttgtctcctcactaagtccttgtggc 27691619  T
Q  115 ttactctttctttt 128  Q
    ||||||||||||||    
T  27691620 ttactctttctttt 27691633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 23 - 183
Target Start/End: Complemental strand, 15970439 - 15970279
Alignment:
Q  23 aaaattagatttgagaaaaataaat-agtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtctctcactaagtccttgtaacttactct 121  Q
    ||||||||||||||||||| ||| | | ||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||| ||||| |||    
T  15970439 aaaattagatttgagaaaagtaatttaatcgtgcccttgtgtgttgcccttctagttggtggtggttgttgtctctcactaagtccttgtgacttattct 15970340  T
Q  122 ttctttttctatannnnnnnnccagattttcaagcagttgggtagaaagctgctagtagact 183  Q
    ||  ||||||||          ||||||| |||||||||  |||||||||||||||||||||    
T  15970339 tttattttctat-tattttcttcagatttccaagcagttaagtagaaagctgctagtagact 15970279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 3 - 106
Target Start/End: Original strand, 33055801 - 33055905
Alignment:
Q  3 gttactagcctcataagttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtct-ctcact 101  Q
    |||| ||||||  ||||||||||||||||||||||||||||||||| |||||||| | |||||||||||| || ||||||||  ||||||||| ||||||    
T  33055801 gttattagccttgtaagttaaaaattagatttgagaaaaataaataatcgtgcccatatgtgtttcccttctatttggtggtgattgttgtctcctcact 33055900  T
Q  102 aagtc 106  Q
    |||||    
T  33055901 aagtc 33055905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 3 - 106
Target Start/End: Original strand, 33063280 - 33063384
Alignment:
Q  3 gttactagcctcataagttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtct-ctcact 101  Q
    |||||||||||  ||||||||||||||||||||||||||||||||| |||||||| || |||||||| || || ||||||||  ||||||||| ||||||    
T  33063280 gttactagccttgtaagttaaaaattagatttgagaaaaataaataatcgtgcccatgcgtgtttccattctatttggtggtgattgttgtctcctcact 33063379  T
Q  102 aagtc 106  Q
    |||||    
T  33063380 aagtc 33063384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 23 - 118
Target Start/End: Original strand, 6952403 - 6952498
Alignment:
Q  23 aaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtctctcactaagtccttgtaacttac 118  Q
    |||||| ||||||||||||  ||||| |||||||||||||||||| |||| || || ||||| |||||||||||||||||||||||||| ||||||    
T  6952403 aaaatttgatttgagaaaaggaaataatcgtgcccttgtgtgttttccttctacttagtggtggttgttgtctctcactaagtccttgtgacttac 6952498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 23 - 133
Target Start/End: Original strand, 27651185 - 27651295
Alignment:
Q  23 aaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtctctcactaagtccttgtaacttactctt 122  Q
    ||||| |||||||||||||  ||||| | |||| || |||||||||| || ||||||||||| |||||||||||||||||||||||||| ||||||| ||    
T  27651185 aaaatcagatttgagaaaataaaataattgtgctctcgtgtgtttcctttctagttggtggtggttgttgtctctcactaagtccttgtgacttactatt 27651284  T
Q  123 tctttttctat 133  Q
    |  ||||||||    
T  27651285 ttattttctat 27651295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 3 - 118
Target Start/End: Original strand, 27527406 - 27527531
Alignment:
Q  3 gttactagcctcataagttaaaaattagatttgagaaaa---------ataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgt 93  Q
    |||||||||||  ||||||||||||||||||||||||||         | ||| | ||||||||||||||||||||||| ||||||||||| ||||||||    
T  27527406 gttactagccttgtaagttaaaaattagatttgagaaaagaaaaaaaaaaaaaaattcgtgcccttgtgtgtttcccttctagttggtggtggttgttgt 27527505  T
Q  94 ct-ctcactaagtccttgtaacttac 118  Q
    || ||||||||||| |||| ||||||    
T  27527506 ctcctcactaagtctttgtgacttac 27527531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 32 - 118
Target Start/End: Original strand, 9815053 - 9815140
Alignment:
Q  32 tttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtct-ctcactaagtccttgtaacttac 118  Q
    ||||||||||  ||||| |||||| |||||||||||||||| |||||||| || |||||||||| ||||||||||| |||| ||||||    
T  9815053 tttgagaaaagaaaataatcgtgctcttgtgtgtttcccttctagttggtagtggttgttgtctgctcactaagtctttgtgacttac 9815140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 28 - 133
Target Start/End: Complemental strand, 16694165 - 16694059
Alignment:
Q  28 tagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtct-ctcactaagtccttgtaacttactctttctt 126  Q
    |||||||||||||  ||| || | |||||| ||||||||| |||| |||| |||||| |||||||||| ||||||||||||| ||  ||||||||||| |    
T  16694165 tagatttgagaaacttaattacttgtgcccatgtgtgttttccttctagtcggtggttgttgttgtctcctcactaagtcctcgtggcttactctttcat 16694066  T
Q  127 tttctat 133  Q
    |||||||    
T  16694065 tttctat 16694059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 128
Target Start/End: Complemental strand, 13142075 - 13141996
Alignment:
Q  50 tcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtctc-tcactaagtccttgtaacttactctttctttt 128  Q
    ||||||||  ||||||| ||||| | ||  ||||| ||||||||||| |||||||||||||||  |||||||||||||||    
T  13142075 tcgtgcccaagtgtgttacccttcttgtcagtggtggttgttgtctcctcactaagtccttgtggcttactctttctttt 13141996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 106
Target Start/End: Original strand, 30130534 - 30130609
Alignment:
Q  32 tttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtct-ctcactaagtc 106  Q
    |||||||||  ||| || |||||| | |||||||||||||| |||||||||||  ||||||||| |||||||||||    
T  30130534 tttgagaaacttaattactcgtgctcatgtgtgtttcccttctagttggtggtgattgttgtctcctcactaagtc 30130609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 122; Significance: 1e-62; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 2 - 227
Target Start/End: Original strand, 44324240 - 44324462
Alignment:
Q  2 ggttactagcctcataagttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtctctcact 101  Q
    ||||||||| ||  ||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  44324240 ggttactagtcttgtaaattaaaaattagatttgagaagaataaataatcgtgcccttgtgtgtttcccttctagttggtggtggttgttgtctctcact 44324339  T
Q  102 aagtccttgtaacttactctttctttttctatannnnnnnnccagattttcaagcagttgggtagaaagctgctagtagactcgaagctcagcagtgtga 201  Q
    |||||||||  ||||||||||||| |||||||         |||||||||||||||| || |||||||||||||||||||||||||||||| | | || |    
T  44324340 aagtccttgcgacttactctttctctttctat---ttttttccagattttcaagcagctgagtagaaagctgctagtagactcgaagctcaacggcgtca 44324436  T
Q  202 cattttattggtaggcctccttgatg 227  Q
    |||||| |||||||||||||||||||    
T  44324437 cattttgttggtaggcctccttgatg 44324462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 3 - 133
Target Start/End: Original strand, 45332826 - 45332956
Alignment:
Q  3 gttactagcctcataagttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtctctcacta 102  Q
    |||||||||||  |||||||||||||||||||||||||| |||||| |||| |||||||||||||||||| |||||||| || |||||||||||||||||    
T  45332826 gttactagccttgtaagttaaaaattagatttgagaaaagtaaataatcgttcccttgtgtgtttcccttctagttggtagtggttgttgtctctcacta 45332925  T
Q  103 agtccttgtaacttactctttctttttctat 133  Q
    |||||| || |||||||||||  ||||||||    
T  45332926 agtcctcgtgacttactcttttattttctat 45332956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 16 - 128
Target Start/End: Original strand, 31714048 - 31714161
Alignment:
Q  16 taagttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtct-ctcactaagtccttgtaac 114  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||| |||||||||| ||||||||||||||||  |    
T  31714048 taagttaaaaattagatttgagaaaaataaataatcgtgcccttgtgtgtttcccttctagtcggtggtggttgttgtctcctcactaagtccttgtggc 31714147  T
Q  115 ttactctttctttt 128  Q
    ||||||||||||||    
T  31714148 ttactctttctttt 31714161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 16 - 128
Target Start/End: Complemental strand, 39154746 - 39154633
Alignment:
Q  16 taagttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtct-ctcactaagtccttgtaac 114  Q
    ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |||| |||||| |||||||||| ||||||||||||||||  |    
T  39154746 taagttaaaaattagatttgagaaaaataaataatcgtgctcttgtgtgtttcccttctagtcggtggtggttgttgtctcctcactaagtccttgtggc 39154647  T
Q  115 ttactctttctttt 128  Q
    ||||||||||||||    
T  39154646 ttactctttctttt 39154633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 23 - 133
Target Start/End: Complemental strand, 808689 - 808579
Alignment:
Q  23 aaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtctctcactaagtccttgtaacttactctt 122  Q
    ||||||||||||||||||| ||| || |||||| |||||| ||||||| | |||||||||||  ||||||||||||||||||||| ||| ||||||||||    
T  808689 aaaattagatttgagaaaagtaactaatcgtgctcttgtgggtttcccctctagttggtggtgattgttgtctctcactaagtccctgtgacttactctt 808590  T
Q  123 tctttttctat 133  Q
    |  ||||||||    
T  808589 ttattttctat 808579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 26 - 118
Target Start/End: Original strand, 4406347 - 4406440
Alignment:
Q  26 attagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtc-tctcactaagtccttgtaacttac 118  Q
    |||||||||||||||||||| || ||||||| ||||||||||||||| |||||||| || ||||||||| |||||||||||| |||| ||||||    
T  4406347 attagatttgagaaaaataactattcgtgccattgtgtgtttcccttctagttggtagtggttgttgtcttctcactaagtctttgtgacttac 4406440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 33 - 118
Target Start/End: Complemental strand, 9311150 - 9311064
Alignment:
Q  33 ttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtc-tctcactaagtccttgtaacttac 118  Q
    |||||||||  ||||| | ||||||||||||||||||||| |||||||| || ||||||||| ||||||||||||||| | ||||||    
T  9311150 ttgagaaaagaaaataattgtgcccttgtgtgtttcccttctagttggtagtggttgttgtcttctcactaagtccttatgacttac 9311064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 106
Target Start/End: Original strand, 10416155 - 10416212
Alignment:
Q  50 tcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtct-ctcactaagtc 106  Q
    |||||||| |||||||||||||| |||||||||||  ||||||||| |||||||||||    
T  10416155 tcgtgcccatgtgtgtttcccttctagttggtggtgattgttgtctcctcactaagtc 10416212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 106
Target Start/End: Original strand, 4698095 - 4698170
Alignment:
Q  32 tttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtct-ctcactaagtc 106  Q
    |||||||||  ||| || ||||| || |||||||||||||| |||||||||||  ||||||||| |||||||||||    
T  4698095 tttgagaaacttaattactcgtgtccatgtgtgtttcccttatagttggtggtgattgttgtctcctcactaagtc 4698170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 101; Significance: 3e-50; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 3 - 199
Target Start/End: Complemental strand, 27561167 - 27560975
Alignment:
Q  3 gttactagcctcataagttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtctctcacta 102  Q
    |||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  27561167 gttactagccttgtaagttaaaaattagatttgagaaaaataaataatcgtgcccttgtgtgtttcccttctagttggtggtggttgttgtctctcacta 27561068  T
Q  103 agtccttgtaacttactctttctttttctatannnnnnnnccagattttcaagcagttgggtagaaagctgctagtagactcgaagctcagcagtgt 199  Q
    ||||||||| |||||||||||  ||||||||          ||||||||||||||| |  |||| ||||||||||||||||| ||| ||||| ||||    
T  27561067 agtccttgtgacttactcttttattttctat----ttttttcagattttcaagcagctaagtaggaagctgctagtagactcaaagttcagccgtgt 27560975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 3 - 118
Target Start/End: Complemental strand, 4763521 - 4763405
Alignment:
Q  3 gttactagcctcataagttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtc-tctcact 101  Q
    |||||||||||  |||||||||||||||||||||||||||||| || ||||||| ||||||||||||||| |||||||| || ||||||||| |||||||    
T  4763521 gttactagccttgtaagttaaaaattagatttgagaaaaataactattcgtgccattgtgtgtttcccttctagttggtagtggttgttgtcttctcact 4763422  T
Q  102 aagtccttgtaacttac 118  Q
    ||||| |||| ||||||    
T  4763421 aagtctttgtgacttac 4763405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 43 - 133
Target Start/End: Original strand, 51533841 - 51533930
Alignment:
Q  43 taaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtctctcactaagtccttgtaacttactctttctttttctat 133  Q
    |||||| ||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||||| |||||||||||| || |||||    
T  51533841 taaataatcgtgcccttgtgtgtttcccttctagt-ggtggtggttgttgtctctcactaagtccttgtgacttactctttcattgtctat 51533930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 43 - 133
Target Start/End: Complemental strand, 18694217 - 18694128
Alignment:
Q  43 taaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtctctcactaagtccttgtaacttactctttctttttctat 133  Q
    |||||| |||||||||||||||||||||||  ||| |||||| |||||||||||||||||||||||||| |||||||||||| || |||||    
T  18694217 taaataatcgtgcccttgtgtgtttcccttccagt-ggtggtggttgttgtctctcactaagtccttgtgacttactctttcattctctat 18694128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 32 - 117
Target Start/End: Complemental strand, 27733678 - 27733593
Alignment:
Q  32 tttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtctctcactaagtccttgtaactta 117  Q
    ||||||||| ||| ||| ||||||||||||||||||||||| |||| ||| || |||||||||||||||||||||||||| |||||    
T  27733678 tttgagaaatatacataatcgtgcccttgtgtgtttcccttctagtgggtagtggttgttgtctctcactaagtccttgtgactta 27733593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 23 - 123
Target Start/End: Complemental strand, 5358635 - 5358535
Alignment:
Q  23 aaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtctctcactaagtccttgtaacttactctt 122  Q
    |||||| |||||||||||| |||||| ||||| ||||||||||||| ||| |||| ||| || |||||||||| ||||||||||||| | ||||||||||    
T  5358635 aaaatttgatttgagaaaactaaataatcgtgtccttgtgtgtttctcttctagtgggtagtggttgttgtctttcactaagtccttatgacttactctt 5358536  T
Q  123 t 123  Q
    |    
T  5358535 t 5358535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 26 - 128
Target Start/End: Complemental strand, 54351876 - 54351775
Alignment:
Q  26 attagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtctctcactaagtccttgtaacttactctttct 125  Q
    |||||||||||||||  ||||||  ||||| ||||| ||||||| || ||||||||||| ||||||||||||||||||||||| ||  ||||||||||||    
T  54351876 attagatttgagaaag-taaataaccgtgctcttgtatgtttcctttctagttggtggtggttgttgtctctcactaagtcctagtggcttactctttct 54351778  T
Q  126 ttt 128  Q
    |||    
T  54351777 ttt 54351775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 23 - 133
Target Start/End: Complemental strand, 11512813 - 11512701
Alignment:
Q  23 aaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtct-ctcactaagtccttgt-aacttactc 120  Q
    ||||||||||||||||||| ||| || ||| |||||||||||||||||||||||| | || | |||||||||| ||||  |||||||||| || ||||||    
T  11512813 aaaattagatttgagaaaagtaattaatcgcgcccttgtgtgtttcccttttagtcgatgatggttgttgtctcctcatcaagtccttgtgaaattactc 11512714  T
Q  121 tttctttttctat 133  Q
    |||  ||||||||    
T  11512713 ttttattttctat 11512701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 26 - 227
Target Start/End: Original strand, 60733 - 60929
Alignment:
Q  26 attagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtctctcactaagtccttgtaacttactctttct 125  Q
    |||||||||||||||| ||| || ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||  |||||||||||||    
T  60733 attagatttgagaaaagtaattaatcgtgcccttgtgtgtttcccttctagttggtggtggttgttgtctctcactaagtccttgcgacttactctttct 60832  T
Q  126 ttttctatannnnnnnnccagattttcaagcagttgggtagaaagctgctagtagactcgaagctcagcagtgtgacattttattggtaggcctccttga 225  Q
     |||||||          ||||||||||||||| || ||||||||| ||||| |||||||||||||||| | || ||||||| ||||||||| |||||||    
T  60833 ctttctat-----tttttcagattttcaagcagctgagtagaaagcggctagcagactcgaagctcagcggcgtcacattttgttggtaggcttccttga 60927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 89; Significance: 5e-43; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 3 - 199
Target Start/End: Original strand, 19435171 - 19435363
Alignment:
Q  3 gttactagcctcataagttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtctctcacta 102  Q
    |||||||||||   |||||||||||||||||||||||||||||||| ||||| |||| || ||||||||| ||||||||||| |||||||||||||||||    
T  19435171 gttactagccttgaaagttaaaaattagatttgagaaaaataaataatcgtgtccttttgcgtttcccttctagttggtggtggttgttgtctctcacta 19435270  T
Q  103 agtccttgtaacttactctttctttttctatannnnnnnnccagattttcaagcagttgggtagaaagctgctagtagactcgaagctcagcagtgt 199  Q
    |||||||||||||||||||||  ||||||||          ||||||||||||||| |  |||| ||||||||||||||||| ||| ||||| ||||    
T  19435271 agtccttgtaacttactcttttattttctat----ttttttcagattttcaagcagctaagtaggaagctgctagtagactcaaagttcagccgtgt 19435363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 2 - 118
Target Start/End: Complemental strand, 28058486 - 28058369
Alignment:
Q  2 ggttactagcctcataagttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtct-ctcac 100  Q
    ||||||||||||  ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||| |||||    
T  28058486 ggttactagccttgtaaattaaaaattagatttgagaaaaataaatattcgtgcccttgtgtgtttcccttctagttggtggtggttgttgtctcctcac 28058387  T
Q  101 taagtccttgtaacttac 118  Q
    |||||| |||| ||||||    
T  28058386 taagtctttgtgacttac 28058369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 2 - 118
Target Start/End: Complemental strand, 28068911 - 28068794
Alignment:
Q  2 ggttactagcctcataagttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtct-ctcac 100  Q
    ||||||||||||  ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||| |||||    
T  28068911 ggttactagccttgtaaattaaaaattagatttgagaaaaataaatattcgtgcccttgtgtgtttcccttctagttggtggtggttgttgtctcctcac 28068812  T
Q  101 taagtccttgtaacttac 118  Q
    |||||| |||| ||||||    
T  28068811 taagtctttgtgacttac 28068794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 3 - 117
Target Start/End: Complemental strand, 6911357 - 6911242
Alignment:
Q  3 gttactagcctcataagttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtc-tctcact 101  Q
    |||||||||||  |||||||||||||||||||||||||||||| || ||||||| ||||||||||||||| |||||||| || ||||||||| |||||||    
T  6911357 gttactagccttgtaagttaaaaattagatttgagaaaaataactattcgtgccattgtgtgtttcccttctagttggtagtggttgttgtcttctcact 6911258  T
Q  102 aagtccttgtaactta 117  Q
    ||||| |||| |||||    
T  6911257 aagtctttgtgactta 6911242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 3 - 118
Target Start/End: Original strand, 28103980 - 28104096
Alignment:
Q  3 gttactagcctcataagttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtct-ctcact 101  Q
    |||||||||||   |||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||| |||||| ||| ||||||    
T  28103980 gttactagccttgaaagtaaaaaattagatttgagataaataaataatcgtgcccttgtgtgtttcccttctagttggtggtggttgttttctcctcact 28104079  T
Q  102 aagtccttgtaacttac 118  Q
    ||||| |||| ||||||    
T  28104080 aagtctttgtgacttac 28104096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 32 - 123
Target Start/End: Complemental strand, 17954784 - 17954693
Alignment:
Q  32 tttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtctctcactaagtccttgtaacttactcttt 123  Q
    ||||||||| ||| ||| |||||| ||| |||||||||||| |||| ||| || |||||||||||||||||||||||||| |||||||||||    
T  17954784 tttgagaaatatacataatcgtgctcttttgtgtttcccttctagtgggtagtggttgttgtctctcactaagtccttgtgacttactcttt 17954693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 60 - 121
Target Start/End: Complemental strand, 23397984 - 23397923
Alignment:
Q  60 gtgtgtttcccttttagttggtggtagttgttgtctctcactaagtccttgtaacttactct 121  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||||| ||| |||||||||    
T  23397984 gtgtgtttcccttctagttggtggtggttgttgtctctcactaagtccctgtgacttactct 23397923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 59 - 133
Target Start/End: Complemental strand, 9436076 - 9436001
Alignment:
Q  59 tgtgtgtttcccttttagttggtggtagttgttgtctctc-actaagtccttgtaacttactctttctttttctat 133  Q
    ||||||||| |||| ||||||||||| ||||||||||| | ||||||||||||| |||||||||||| ||||||||    
T  9436076 tgtgtgttttccttatagttggtggtggttgttgtctccccactaagtccttgtgacttactctttcattttctat 9436001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 106
Target Start/End: Complemental strand, 5705547 - 5705490
Alignment:
Q  50 tcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtct-ctcactaagtc 106  Q
    ||||||||||||||||||||||| |||||||||||  ||||||||| |||||||||||    
T  5705547 tcgtgcccttgtgtgtttcccttctagttggtggtgattgttgtctcctcactaagtc 5705490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 5e-40; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 2 - 133
Target Start/End: Complemental strand, 5519504 - 5519373
Alignment:
Q  2 ggttactagcctcataagttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtctctcact 101  Q
    ||||||||||||  ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||  |||||||||||||||    
T  5519504 ggttactagccttgtaaattaaaaattagatttgagaaaaataaataatcgtgcccttgtgtgtttcccttctatttggtggtgattgttgtctctcact 5519405  T
Q  102 aagtccttgtaacttactctttctttttctat 133  Q
    |||||| ||| |||||||||||  ||||||||    
T  5519404 aagtccctgtgacttactcttttattttctat 5519373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 2 - 133
Target Start/End: Original strand, 42785652 - 42785783
Alignment:
Q  2 ggttactagcctcataagttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtctctcact 101  Q
    ||||||||||||  ||| |||||||||||||||||||||| ||| || |||||| |||||||||||||||| |||||||||||  |||||||||||||||    
T  42785652 ggttactagccttgtaaattaaaaattagatttgagaaaagtaactaatcgtgctcttgtgtgtttcccttctagttggtggtgattgttgtctctcact 42785751  T
Q  102 aagtccttgtaacttactctttctttttctat 133  Q
    |||||| ||| |||||||||||  ||||||||    
T  42785752 aagtccctgtgacttactcttttattttctat 42785783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 32 - 133
Target Start/End: Original strand, 15599016 - 15599117
Alignment:
Q  32 tttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtctctcactaagtccttgtaacttactctttctttttct 131  Q
    |||||||||| |||||| |||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||  ||||||    
T  15599016 tttgagaaaagtaaataatcgtgcccatgtgtgtttcccttctagttggtggtggttgttgtctctcactaagtccttgtgacttactctttaattttct 15599115  T
Q  132 at 133  Q
    ||    
T  15599116 at 15599117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 116
Target Start/End: Complemental strand, 27198289 - 27198198
Alignment:
Q  26 attagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtct-ctcactaagtccttgtaactt 116  Q
    |||||||||||||||  ||| || | |||| ||||||||||| | || ||||||||||| |||||||||| ||||||||||| |||| ||||    
T  27198289 attagatttgagaaagttaactatttgtgctcttgtgtgtttacgttctagttggtggtggttgttgtctcctcactaagtctttgtgactt 27198198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 3 - 133
Target Start/End: Original strand, 18982584 - 18982714
Alignment:
Q  3 gttactagcctcataagttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtctctcacta 102  Q
    |||||||||||  ||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||| |||||||| || |||||||||||||||||    
T  18982584 gttactagccttgtaagttaaaaattcgatttgagaaaaataaataatcgtgcccttgggtgtttcccttctagttggtagtggttgttgtctctcacta 18982683  T
Q  103 agtccttgtaacttactctttctttttctat 133  Q
    |||||| || |||||||||||  ||||||||    
T  18982684 agtcctcgtgacttactcttttattttctat 18982714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 2 - 133
Target Start/End: Complemental strand, 4706683 - 4706552
Alignment:
Q  2 ggttactagcctcataagttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtctctcact 101  Q
    ||||||||||||  ||| |||||||||||||||||||||| ||| || |||||| |||||||||||||||| |||||||||||  |||||||||||||||    
T  4706683 ggttactagccttgtaaattaaaaattagatttgagaaaagtaactaatcgtgctcttgtgtgtttcccttctagttggtggtgattgttgtctctcact 4706584  T
Q  102 aagtccttgtaacttactctttctttttctat 133  Q
    |||||| ||| |||||||||||  ||||||||    
T  4706583 aagtccctgtgacttactcttttattttctat 4706552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 23 - 133
Target Start/End: Complemental strand, 26917350 - 26917241
Alignment:
Q  23 aaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtctctcactaagtccttgtaacttactctt 122  Q
    |||||| |||||||||||| |||| | ||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||| |    
T  26917350 aaaatttgatttgagaaaagtaaagaatcgtgcccttgtgtgtttcccttctagt-ggtggtggttgttgtctctcactaagtccttgtaacttactcct 26917252  T
Q  123 tctttttctat 133  Q
    || ||||||||    
T  26917251 tcattttctat 26917241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 23 - 123
Target Start/End: Complemental strand, 28603122 - 28603022
Alignment:
Q  23 aaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtctctcactaagtccttgtaacttactctt 122  Q
    ||||||||||||||||||| ||| || |||||| |||||||||||||||| |||||||||||  ||||||||||||||||||||| | | ||||||||||    
T  28603122 aaaattagatttgagaaaagtaactaatcgtgctcttgtgtgtttcccttctagttggtggtgattgttgtctctcactaagtccctctgacttactctt 28603023  T
Q  123 t 123  Q
    |    
T  28603022 t 28603022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 57 - 122
Target Start/End: Complemental strand, 26340452 - 26340387
Alignment:
Q  57 cttgtgtgtttcccttttagttggtggtagttgttgtctctcactaagtccttgtaacttactctt 122  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||| |||||||| ||||||||||    
T  26340452 cttgtgtgtttcccttctagttggtggtggttgttgtctctcactatgtccttgtgacttactctt 26340387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 118
Target Start/End: Original strand, 15925123 - 15925219
Alignment:
Q  23 aaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtct-ctcactaagtccttgtaacttac 118  Q
    |||||| |||||||||||| |||||| ||||||| ||||||| ||||||| |||||||||||  ||||||||| ||||||||||| |||| ||||||    
T  15925123 aaaatttgatttgagaaaagtaaataatcgtgccgttgtgtgcttcccttctagttggtggtgattgttgtctcctcactaagtctttgtgacttac 15925219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 3 - 199
Target Start/End: Original strand, 3815 - 4007
Alignment:
Q  3 gttactagcctcataagttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtctctcacta 102  Q
    |||||||||||  ||| |||||||||| ||||||||||| |||| | ||||||||||||||||||||||| |||||||| || |||||||||||||||||    
T  3815 gttactagccttgtaaattaaaaattatatttgagaaaagtaaaaaatcgtgcccttgtgtgtttcccttctagttggtagtggttgttgtctctcacta 3914  T
Q  103 agtccttgtaacttactctttctttttctatannnnnnnnccagattttcaagcagttgggtagaaagctgctagtagactcgaagctcagcagtgt 199  Q
    ||||||||| |||||||||||  ||||||||          ||||||||||||||| |  |||| ||||||||||||||||| ||| ||||| ||||    
T  3915 agtccttgtgacttactcttttattttctat----ttttttcagattttcaagcagctaagtaggaagctgctagtagactcaaagttcagccgtgt 4007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0713 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: scaffold0713
Description:

Target: scaffold0713; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 16 - 118
Target Start/End: Original strand, 892 - 995
Alignment:
Q  16 taagttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtct-ctcactaagtccttgtaac 114  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||| ||||| ||||||||||| |||| ||    
T  892 taagttaaaaattagatttgagaaaaataaataatcgtgcccttgtgtgtttcccttctagttggtggtggttgatgtctcctcactaagtctttgtgac 991  T
Q  115 ttac 118  Q
    ||||    
T  992 ttac 995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 26 - 134
Target Start/End: Complemental strand, 412980 - 412872
Alignment:
Q  26 attagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtctctcactaagtccttgtaacttactctttct 125  Q
    |||||||||||||||| ||| ||  |||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||| ||||| |||||      
T  412980 attagatttgagaaaagtaattatccgtgcccttgtgtgtttcccttttagttagtggtagttgttgtctctcattaagaccttgtgacttaatctttta 412881  T
Q  126 ttttctata 134  Q
    |||||||||    
T  412880 ttttctata 412872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 59 - 134
Target Start/End: Complemental strand, 406944 - 406869
Alignment:
Q  59 tgtgtgtttcccttttagttggtggtagttgttgtctctcactaagtccttgtaacttactctttctttttctata 134  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||  |||||||||    
T  406944 tgtgtgtttcccttttagttggtggtggttgttgtctctcactaagtccttgtgacttaatcttttattttctata 406869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 26 - 123
Target Start/End: Complemental strand, 424352 - 424255
Alignment:
Q  26 attagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtctctcactaagtccttgtaacttactcttt 123  Q
    |||||||||||||||| ||| ||   ||||||||||| |||||||||||||||| |||| ||||||||||||||||| |||||||| ||||| |||||    
T  424352 attagatttgagaaaagtaattatcggtgcccttgtgcgtttcccttttagttgatggtggttgttgtctctcactatgtccttgtgacttaatcttt 424255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 144 - 227
Target Start/End: Complemental strand, 233479 - 233396
Alignment:
Q  144 cagattttcaagcagttgggtagaaagctgctagtagactcgaagctcagcagtgtgacattttattggtaggcctccttgatg 227  Q
    |||||||||||| || | ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  233479 cagattttcaagaagctaggtagaaagttgctagtagactcgaagctcagcagtgtcacattttattggtaggcctccttgatg 233396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 129
Target Start/End: Complemental strand, 182889 - 182811
Alignment:
Q  52 gtgcccttgtgtgtttcccttttagttggtggtagttgttgtct-ctcactaagtccttgtaacttactctttcttttt 129  Q
    |||| ||||||||||| |||| |||||||||||  ||||||||| ||| |||||| ||||| ||||| |||||| ||||    
T  182889 gtgcacttgtgtgttttccttctagttggtggtgattgttgtctcctccctaagtacttgtgacttagtctttcatttt 182811  T

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Target: chr7 (Bit Score: 62; Significance: 6e-27; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 26 - 123
Target Start/End: Complemental strand, 36264224 - 36264128
Alignment:
Q  26 attagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtctctcactaagtccttgtaacttactcttt 123  Q
    |||||||||||||||| |||||| |||||| |||||||||||||||| | ||||||||| |||||||||||||||||||||| ||| |||||||||||    
T  36264224 attagatttgagaaaa-taaataatcgtgctcttgtgtgtttcccttcttgttggtggtggttgttgtctctcactaagtccctgtgacttactcttt 36264128  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 23 - 118
Target Start/End: Original strand, 28803742 - 28803838
Alignment:
Q  23 aaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtct-ctcactaagtccttgtaacttac 118  Q
    |||||| |||||||||||| |||||| |||||||||||||| |||||||| |||||||||||  ||||||||| ||||||||||| |||| ||||||    
T  28803742 aaaatttgatttgagaaaagtaaataatcgtgcccttgtgtatttcccttctagttggtggtgattgttgtctcctcactaagtctttgtgacttac 28803838  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 44 - 118
Target Start/End: Complemental strand, 44060131 - 44060056
Alignment:
Q  44 aaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtc-tctcactaagtccttgtaacttac 118  Q
    ||||| |||||||||||||||||||| || |||||||| || ||||||||| |||||||||||| |||| ||||||    
T  44060131 aaataatcgtgcccttgtgtgtttcctttctagttggtagtggttgttgtcttctcactaagtctttgtgacttac 44060056  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 124
Target Start/End: Complemental strand, 29466983 - 29466909
Alignment:
Q  52 gtgcccttgtgtgtttccctt-ttagttggtggtagttgttgtct-ctcactaagtccttgtaacttactctttc 124  Q
    ||||||||||||||||||||| | |||||||||| |||||||||| ||| |||| || |||| |||||| |||||    
T  29466983 gtgcccttgtgtgtttcccttctaagttggtggtggttgttgtctcctcgctaaatcattgtgacttaccctttc 29466909  T

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Target: scaffold0438 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 31 - 122
Target Start/End: Complemental strand, 7654 - 7563
Alignment:
Q  31 atttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtctctcactaagtccttgtaacttactctt 122  Q
    |||||||||||  ||||| |||| |||||||||||||||||| ||||||||||| ||||||||||||| ||| |||||||| ||||||||||    
T  7654 atttgagaaaagaaaataatcgtacccttgtgtgtttcccttctagttggtggtggttgttgtctctccctatgtccttgtgacttactctt 7563  T

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Target: scaffold0438; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 57 - 122
Target Start/End: Complemental strand, 10613 - 10548
Alignment:
Q  57 cttgtgtgtttcccttttagttggtggtagttgttgtctctcactaagtccttgtaacttactctt 122  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||| |||||||| ||||||||||    
T  10613 cttgtgtgtttcccttctagttggtggtggttgttgtctctcactatgtccttgtgacttactctt 10548  T

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Target: scaffold0036 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 115
Target Start/End: Complemental strand, 31792 - 31705
Alignment:
Q  26 attagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtctct-cactaagtccttgtaact 115  Q
    |||| |||||||||| |||| || | |||||||||| |||||||||| || ||||||||   |||||||||  ||||||||||||||||||    
T  31792 attatatttgagaaagataactatttgtgcccttgtatgtttcccttctatttggtggt---tgttgtctccgcactaagtccttgtaact 31705  T

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