View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11472_low_36 (Length: 223)

Name: NF11472_low_36
Description: NF11472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11472_low_36
NF11472_low_36
[»] scaffold0598 (1 HSPs)
scaffold0598 (32-183)||(7958-8109)
[»] chr3 (38 HSPs)
chr3 (107-216)||(52369745-52369854)
chr3 (122-216)||(12704652-12704746)
chr3 (127-187)||(15864832-15864892)
chr3 (132-180)||(21149073-21149121)
chr3 (127-187)||(24205041-24205101)
chr3 (123-187)||(25074788-25074852)
chr3 (129-179)||(3730167-3730217)
chr3 (145-187)||(16789668-16789710)
chr3 (124-210)||(21211264-21211350)
chr3 (122-179)||(25892467-25892524)
chr3 (130-187)||(34189426-34189483)
chr3 (122-179)||(41319305-41319362)
chr3 (145-177)||(20503474-20503506)
chr3 (140-180)||(20691325-20691365)
chr3 (68-178)||(34910325-34910435)
chr3 (140-187)||(21861568-21861615)
chr3 (122-185)||(25326427-25326490)
chr3 (146-185)||(25652050-25652089)
chr3 (132-178)||(1830351-1830397)
chr3 (145-187)||(3164043-3164085)
chr3 (145-187)||(4987309-4987351)
chr3 (145-187)||(7928449-7928491)
chr3 (151-185)||(11093571-11093605)
chr3 (145-187)||(14979180-14979222)
chr3 (127-181)||(25365467-25365521)
chr3 (145-183)||(25948905-25948943)
chr3 (145-187)||(49651804-49651846)
chr3 (144-178)||(51206370-51206404)
chr3 (145-178)||(10954960-10954993)
chr3 (145-178)||(26508118-26508151)
chr3 (145-178)||(28918009-28918042)
chr3 (69-105)||(4987222-4987258)
chr3 (65-105)||(8903516-8903556)
chr3 (123-187)||(14223849-14223913)
chr3 (122-174)||(21367289-21367341)
chr3 (67-103)||(21861658-21861694)
chr3 (139-191)||(28779557-28779609)
chr3 (122-178)||(34307775-34307831)
[»] chr4 (30 HSPs)
chr4 (104-187)||(20743255-20743338)
chr4 (108-179)||(31243529-31243600)
chr4 (123-187)||(24343506-24343570)
chr4 (123-185)||(3144648-3144710)
chr4 (145-187)||(32910550-32910592)
chr4 (134-187)||(34515881-34515934)
chr4 (145-187)||(21945502-21945544)
chr4 (107-187)||(7012065-7012145)
chr4 (124-180)||(30520433-30520490)
chr4 (145-186)||(37203264-37203305)
chr4 (126-179)||(53968553-53968606)
chr4 (127-187)||(16402211-16402271)
chr4 (67-103)||(19230241-19230277)
chr4 (145-185)||(29205445-29205485)
chr4 (140-187)||(5654604-5654651)
chr4 (107-186)||(6273944-6274023)
chr4 (76-127)||(35239178-35239229)
chr4 (140-186)||(18513254-18513300)
chr4 (67-105)||(30299010-30299048)
chr4 (67-105)||(30327878-30327916)
chr4 (67-105)||(40784034-40784072)
chr4 (140-186)||(43299984-43300030)
chr4 (140-186)||(43300616-43300662)
chr4 (145-179)||(50848321-50848355)
chr4 (67-105)||(53381530-53381568)
chr4 (145-178)||(11596370-11596403)
chr4 (145-178)||(28964266-28964299)
chr4 (145-178)||(54580041-54580074)
chr4 (63-103)||(824212-824252)
chr4 (140-180)||(10546154-10546194)
[»] chr7 (28 HSPs)
chr7 (64-179)||(29812595-29812716)
chr7 (130-191)||(13427571-13427632)
chr7 (122-187)||(23930218-23930283)
chr7 (127-210)||(23751876-23751959)
chr7 (122-187)||(43249992-43250057)
chr7 (122-180)||(10230068-10230126)
chr7 (122-187)||(7133273-7133338)
chr7 (122-187)||(38804550-38804615)
chr7 (140-186)||(44020975-44021021)
chr7 (122-187)||(4017789-4017854)
chr7 (121-186)||(17780078-17780143)
chr7 (145-187)||(1885572-1885614)
chr7 (123-181)||(5938477-5938535)
chr7 (127-185)||(12278836-12278894)
chr7 (145-187)||(24339641-24339683)
chr7 (145-187)||(25481901-25481943)
chr7 (140-186)||(38134419-38134465)
chr7 (66-103)||(1433542-1433579)
chr7 (65-94)||(14729795-14729824)
chr7 (68-109)||(18035806-18035847)
chr7 (130-183)||(22683758-22683811)
chr7 (145-178)||(26033479-26033512)
chr7 (68-105)||(32287404-32287441)
chr7 (145-204)||(5954226-5954288)
chr7 (146-178)||(8234154-8234186)
chr7 (145-185)||(18233616-18233656)
chr7 (140-180)||(30606077-30606117)
chr7 (64-104)||(40131936-40131976)
[»] chr2 (27 HSPs)
chr2 (107-187)||(11307984-11308063)
chr2 (110-216)||(30563379-30563485)
chr2 (107-186)||(23354632-23354711)
chr2 (110-187)||(25544480-25544557)
chr2 (125-187)||(10535757-10535819)
chr2 (123-180)||(24011042-24011099)
chr2 (127-186)||(12748684-12748743)
chr2 (107-186)||(23354975-23355054)
chr2 (145-187)||(30404868-30404910)
chr2 (145-178)||(12668441-12668474)
chr2 (122-187)||(19573977-19574042)
chr2 (122-187)||(37986778-37986843)
chr2 (151-187)||(25317136-25317172)
chr2 (133-180)||(34006997-34007044)
chr2 (67-105)||(18840953-18840991)
chr2 (145-187)||(21374717-21374759)
chr2 (145-187)||(28677908-28677950)
chr2 (145-187)||(30298465-30298507)
chr2 (140-185)||(18570973-18571018)
chr2 (145-178)||(30335425-30335458)
chr2 (145-178)||(30717548-30717581)
chr2 (145-186)||(40681982-40682023)
chr2 (149-186)||(42418869-42418906)
chr2 (63-104)||(42511318-42511359)
chr2 (121-180)||(6698453-6698513)
chr2 (151-179)||(24894492-24894520)
chr2 (66-133)||(44635546-44635613)
[»] chr6 (29 HSPs)
chr6 (123-186)||(34446565-34446628)
chr6 (66-178)||(30781232-30781345)
chr6 (87-187)||(34229453-34229548)
chr6 (129-193)||(12235521-12235585)
chr6 (124-187)||(6389742-6389805)
chr6 (127-187)||(12086345-12086405)
chr6 (145-186)||(28715295-28715336)
chr6 (117-185)||(19602171-19602239)
chr6 (122-185)||(17168458-17168521)
chr6 (150-195)||(25010225-25010270)
chr6 (145-180)||(17168900-17168935)
chr6 (145-187)||(5970126-5970168)
chr6 (145-187)||(7977848-7977890)
chr6 (145-187)||(12696323-12696365)
chr6 (145-187)||(16766696-16766738)
chr6 (67-105)||(34595215-34595253)
chr6 (145-178)||(10770692-10770725)
chr6 (122-183)||(26247429-26247490)
chr6 (145-178)||(31384928-31384961)
chr6 (68-105)||(31959231-31959268)
chr6 (145-178)||(34595142-34595175)
chr6 (67-111)||(4878017-4878061)
chr6 (131-187)||(6299511-6299567)
chr6 (131-187)||(6306321-6306377)
chr6 (67-111)||(6389807-6389851)
chr6 (145-185)||(7569186-7569226)
chr6 (182-210)||(12787756-12787784)
chr6 (145-177)||(16388251-16388283)
chr6 (124-180)||(34541747-34541803)
[»] chr5 (29 HSPs)
chr5 (122-193)||(43554514-43554585)
chr5 (109-187)||(18607079-18607157)
chr5 (145-186)||(4344742-4344783)
chr5 (123-180)||(5467974-5468031)
chr5 (145-185)||(24906319-24906359)
chr5 (123-187)||(39695995-39696059)
chr5 (145-187)||(13287417-13287459)
chr5 (122-172)||(26205755-26205805)
chr5 (145-187)||(38749581-38749623)
chr5 (145-186)||(18162055-18162096)
chr5 (129-178)||(31264446-31264495)
chr5 (67-111)||(17123122-17123166)
chr5 (139-187)||(42469220-42469268)
chr5 (140-187)||(2577193-2577240)
chr5 (127-185)||(7997166-7997224)
chr5 (129-183)||(18586291-18586344)
chr5 (145-187)||(21191074-21191116)
chr5 (145-187)||(43001799-43001841)
chr5 (145-178)||(6247630-6247663)
chr5 (145-186)||(6471907-6471948)
chr5 (65-94)||(17593661-17593690)
chr5 (129-186)||(18288053-18288110)
chr5 (145-178)||(21576763-21576796)
chr5 (122-179)||(25863211-25863268)
chr5 (146-187)||(28296327-28296368)
chr5 (145-178)||(39698549-39698582)
chr5 (68-104)||(3966596-3966632)
chr5 (67-127)||(6247670-6247729)
chr5 (126-178)||(21137697-21137749)
[»] chr8 (27 HSPs)
chr8 (111-187)||(44067515-44067590)
chr8 (124-180)||(8017492-8017548)
chr8 (127-187)||(1676711-1676771)
chr8 (107-187)||(13009473-13009553)
chr8 (111-179)||(13845241-13845309)
chr8 (127-183)||(35431140-35431196)
chr8 (123-179)||(40063958-40064014)
chr8 (111-185)||(16869699-16869773)
chr8 (149-186)||(30068050-30068087)
chr8 (123-179)||(14513170-14513226)
chr8 (65-105)||(22652068-22652108)
chr8 (127-179)||(39820436-39820488)
chr8 (135-178)||(18646180-18646223)
chr8 (129-184)||(28883880-28883935)
chr8 (67-105)||(29510233-29510271)
chr8 (65-111)||(39820503-39820549)
chr8 (67-105)||(40064043-40064081)
chr8 (145-187)||(41831958-41832000)
chr8 (130-187)||(3658146-3658203)
chr8 (145-178)||(4948660-4948693)
chr8 (70-103)||(13203700-13203733)
chr8 (145-178)||(25566849-25566882)
chr8 (122-187)||(26915235-26915300)
chr8 (145-186)||(28642408-28642449)
chr8 (107-179)||(3911117-3911189)
chr8 (146-178)||(6211456-6211488)
chr8 (65-105)||(24413497-24413537)
[»] chr1 (24 HSPs)
chr1 (122-186)||(42004942-42005006)
chr1 (125-186)||(21145466-21145528)
chr1 (129-185)||(22794080-22794136)
chr1 (122-185)||(6936395-6936458)
chr1 (122-187)||(40747768-40747833)
chr1 (130-187)||(48415728-48415786)
chr1 (67-127)||(22881567-22881627)
chr1 (130-216)||(11634127-11634215)
chr1 (145-185)||(42325561-42325601)
chr1 (65-109)||(48450548-48450592)
chr1 (145-187)||(113298-113340)
chr1 (145-187)||(398783-398825)
chr1 (67-105)||(9828136-9828174)
chr1 (145-187)||(17754310-17754352)
chr1 (140-178)||(30847733-30847771)
chr1 (145-178)||(1486727-1486760)
chr1 (145-178)||(6612189-6612222)
chr1 (145-178)||(18190126-18190159)
chr1 (145-178)||(24577204-24577237)
chr1 (145-178)||(40258951-40258984)
chr1 (67-103)||(7918154-7918190)
chr1 (145-181)||(11571590-11571626)
chr1 (145-177)||(18337338-18337370)
chr1 (67-111)||(34741921-34741965)
[»] scaffold0199 (1 HSPs)
scaffold0199 (127-187)||(1948-2008)
[»] scaffold0066 (1 HSPs)
scaffold0066 (123-187)||(33360-33423)
[»] scaffold0007 (1 HSPs)
scaffold0007 (111-187)||(225253-225328)
[»] scaffold0154 (1 HSPs)
scaffold0154 (66-105)||(13505-13544)
[»] scaffold1528 (1 HSPs)
scaffold1528 (145-187)||(1034-1076)
[»] scaffold0223 (1 HSPs)
scaffold0223 (145-187)||(20171-20213)
[»] scaffold0136 (1 HSPs)
scaffold0136 (145-187)||(3867-3909)
[»] scaffold0103 (1 HSPs)
scaffold0103 (145-187)||(51810-51852)
[»] scaffold0050 (1 HSPs)
scaffold0050 (145-187)||(70277-70319)
[»] scaffold0027 (1 HSPs)
scaffold0027 (145-187)||(46681-46723)
[»] scaffold0652 (1 HSPs)
scaffold0652 (68-105)||(403-440)
[»] scaffold0361 (1 HSPs)
scaffold0361 (145-178)||(14538-14571)


Alignment Details
Target: scaffold0598 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: scaffold0598
Description:

Target: scaffold0598; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 32 - 183
Target Start/End: Original strand, 7958 - 8109
Alignment:
Q  32 tgctttattcttgaactttgctggtgtcaccaaagctatgaagtacggacactcctcggattagatgtgtcccgtgtcggtgtccgacatcgacaccgac 131  Q
    |||||||| ||||||||||||||||||| || ||||||||||||||| ||||| ||| ||||||||||||||||||||| ||||||||| ||| ||||||    
T  7958 tgctttatccttgaactttgctggtgtctccgaagctatgaagtacgcacacttctccgattagatgtgtcccgtgtcgatgtccgacaccgaaaccgac 8057  T
Q  132 acgacatctatgtttacactgaattatgtcattttttcaaattattatccgt 183  Q
    |||| | |||||||||||||||||||||||||||| ||||||||||||||||    
T  8058 acgatacctatgtttacactgaattatgtcattttctcaaattattatccgt 8109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 2e-29; HSPs: 38)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 107 - 216
Target Start/End: Complemental strand, 52369854 - 52369745
Alignment:
Q  107 gtcggtgtccgacatcgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtcgtgtccggtatccgtgtttg 206  Q
    |||||||||||| | |||||||||||||||| ||||| ||||| |||||||||| ||||| |||||||||||||| ||||||||||||| ||||||| ||    
T  52369854 gtcggtgtccgataccgacaccgacacgacacctatgattacattgaattatgtaattttctcaaattattatccatgtcgtgtccggtgtccgtgtctg 52369755  T
Q  207 tgtctgtgct 216  Q
    |||| |||||    
T  52369754 tgtccgtgct 52369745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 122 - 216
Target Start/End: Original strand, 12704652 - 12704746
Alignment:
Q  122 cgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtcgtgtccggtatccgtgtttgtgtctgtgct 216  Q
    |||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||| ||| |||||| |||||    
T  12704652 cgacaccgacacgacacctatgattacattgaattatgtcattttttcaaattattatccgtgttgtgtccggtgtccttgtctgtgtccgtgct 12704746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 127 - 187
Target Start/End: Complemental strand, 15864892 - 15864832
Alignment:
Q  127 ccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtcg 187  Q
    ||||||||||| ||||| ||||||| |||||| ||||||||||||||||||||||||||||    
T  15864892 ccgacacgacacctatgattacactaaattatatcattttttcaaattattatccgtgtcg 15864832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 132 - 180
Target Start/End: Complemental strand, 21149121 - 21149073
Alignment:
Q  132 acgacatctatgtttacactgaattatgtcattttttcaaattattatc 180  Q
    ||||||||| || |||||||||||||||||||||| |||||||||||||    
T  21149121 acgacatctttgattacactgaattatgtcattttctcaaattattatc 21149073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 127 - 187
Target Start/End: Original strand, 24205041 - 24205101
Alignment:
Q  127 ccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtcg 187  Q
    |||||||||||  |||  |||||||| ||||||||||||| ||||||||||||||||||||    
T  24205041 ccgacacgacacttataattacactgtattatgtcattttctcaaattattatccgtgtcg 24205101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 123 - 187
Target Start/End: Complemental strand, 25074852 - 25074788
Alignment:
Q  123 gacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtcg 187  Q
    ||||||||||| ||  ||||| ||||||| |||||||||||||| ||||||||||||| ||||||    
T  25074852 gacaccgacacaacgcctatgattacactcaattatgtcattttctcaaattattatcggtgtcg 25074788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 129 - 179
Target Start/End: Original strand, 3730167 - 3730217
Alignment:
Q  129 gacacgacatctatgtttacactgaattatgtcattttttcaaattattat 179  Q
    ||||||||| ||||| |||||||||||||||||||| | ||||||||||||    
T  3730167 gacacgacacctatgattacactgaattatgtcattatctcaaattattat 3730217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 145 - 187
Target Start/End: Original strand, 16789668 - 16789710
Alignment:
Q  145 ttacactgaattatgtcattttttcaaattattatccgtgtcg 187  Q
    |||||||||||||||||||||| ||||||||||||| ||||||    
T  16789668 ttacactgaattatgtcattttctcaaattattatctgtgtcg 16789710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 124 - 210
Target Start/End: Complemental strand, 21211350 - 21211264
Alignment:
Q  124 acaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtcgtgtccggtatccgtgtttgtgtc 210  Q
    |||||||||||||| | ||  |||||||||| ||||| ||||| |||||||||||||||||| || |||| | || |||| ||||||    
T  21211350 acaccgacacgacacccataattacactgaactatgtaattttctcaaattattatccgtgttgtatccgatgtctgtgtctgtgtc 21211264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 122 - 179
Target Start/End: Complemental strand, 25892524 - 25892467
Alignment:
Q  122 cgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattat 179  Q
    |||||| ||||||||| ||||| |||||||||||||| ||||||| | ||||||||||    
T  25892524 cgacactgacacgacacctatgattacactgaattatatcattttcttaaattattat 25892467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 187
Target Start/End: Complemental strand, 34189483 - 34189426
Alignment:
Q  130 acacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtcg 187  Q
    |||||||| ||| | |||||||||| ||||||||||| ||||||||||||| ||||||    
T  34189483 acacgacacctacgattacactgaaatatgtcattttctcaaattattatctgtgtcg 34189426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 122 - 179
Target Start/End: Original strand, 41319305 - 41319362
Alignment:
Q  122 cgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattat 179  Q
    ||||||||||||||||  ||   ||||| |||||||||||||||||||||||||||||    
T  41319305 cgacaccgacacgacacatacaattacattgaattatgtcattttttcaaattattat 41319362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 177
Target Start/End: Complemental strand, 20503506 - 20503474
Alignment:
Q  145 ttacactgaattatgtcattttttcaaattatt 177  Q
    |||||||||||||||||||||||||||||||||    
T  20503506 ttacactgaattatgtcattttttcaaattatt 20503474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 180
Target Start/End: Complemental strand, 20691365 - 20691325
Alignment:
Q  140 tatgtttacactgaattatgtcattttttcaaattattatc 180  Q
    |||| |||||||||||||||||||||| |||||||||||||    
T  20691365 tatgattacactgaattatgtcattttctcaaattattatc 20691325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 178
Target Start/End: Complemental strand, 34910435 - 34910325
Alignment:
Q  68 tatgaagtacggacactcctcggattagatgtgtcccg-tgtcggtgtccgacatcgacaccgacac-gacatctatgtttacactgaattatgtcattt 165  Q
    ||||||| ||||||||||||||||||||| |||||||| ||||  ||||||||| ||| || ||||| |||   | |  |||||||||||||||| ||||    
T  34910435 tatgaagcacggacactcctcggattagacgtgtcccggtgtca-tgtccgacaccgatac-gacaccgactcttgtaattacactgaattatgtgattt 34910338  T
Q  166 tttcaaattatta 178  Q
    |||||||||||||    
T  34910337 tttcaaattatta 34910325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 187
Target Start/End: Complemental strand, 21861615 - 21861568
Alignment:
Q  140 tatgtttacactgaattatgtcattttttcaaattattatccgtgtcg 187  Q
    |||| ||||||||||||||||||||||| |||||| ||||| ||||||    
T  21861615 tatgattacactgaattatgtcatttttccaaattgttatctgtgtcg 21861568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 185
Target Start/End: Complemental strand, 25326490 - 25326427
Alignment:
Q  122 cgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgt 185  Q
    ||||||| |||||||||||||  ||||||| |||||| | ||||||| ||||||||||| ||||    
T  25326490 cgacaccaacacgacatctataattacactaaattatattatttttttaaattattatctgtgt 25326427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 185
Target Start/End: Original strand, 25652050 - 25652089
Alignment:
Q  146 tacactgaattatgtcattttttcaaattattatccgtgt 185  Q
    ||||||||||||| ||||||| ||||||||||||||||||    
T  25652050 tacactgaattatatcattttctcaaattattatccgtgt 25652089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 178
Target Start/End: Complemental strand, 1830397 - 1830351
Alignment:
Q  132 acgacatctatgtttacactgaattatgtcattttttcaaattatta 178  Q
    |||||| ||||| |||||||||||||||||||||| | |||||||||    
T  1830397 acgacacctatgattacactgaattatgtcattttcttaaattatta 1830351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 187
Target Start/End: Original strand, 3164043 - 3164085
Alignment:
Q  145 ttacactgaattatgtcattttttcaaattattatccgtgtcg 187  Q
    |||||||||||||||| ||||||||||||||||| | ||||||    
T  3164043 ttacactgaattatgtgattttttcaaattattagctgtgtcg 3164085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 187
Target Start/End: Original strand, 4987309 - 4987351
Alignment:
Q  145 ttacactgaattatgtcattttttcaaattattatccgtgtcg 187  Q
    |||||||||||||||| ||||||||||||||||| | ||||||    
T  4987309 ttacactgaattatgtgattttttcaaattattagctgtgtcg 4987351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 187
Target Start/End: Complemental strand, 7928491 - 7928449
Alignment:
Q  145 ttacactgaattatgtcattttttcaaattattatccgtgtcg 187  Q
    |||||||||||||||| ||||||||||||||||| | ||||||    
T  7928491 ttacactgaattatgtgattttttcaaattattagcggtgtcg 7928449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 185
Target Start/End: Complemental strand, 11093605 - 11093571
Alignment:
Q  151 tgaattatgtcattttttcaaattattatccgtgt 185  Q
    |||||||||||||||||||||||||||||| ||||    
T  11093605 tgaattatgtcattttttcaaattattatcagtgt 11093571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 187
Target Start/End: Complemental strand, 14979222 - 14979180
Alignment:
Q  145 ttacactgaattatgtcattttttcaaattattatccgtgtcg 187  Q
    |||||||||||||||| ||||||||||||||||| | ||||||    
T  14979222 ttacactgaattatgtgattttttcaaattattagctgtgtcg 14979180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 181
Target Start/End: Complemental strand, 25365521 - 25365467
Alignment:
Q  127 ccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatcc 181  Q
    |||||||||||  |||| |||||| |||||||||||| || ||||||||||||||    
T  25365521 ccgacacgacacttatgattacaccgaattatgtcatattctcaaattattatcc 25365467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 183
Target Start/End: Original strand, 25948905 - 25948943
Alignment:
Q  145 ttacactgaattatgtcattttttcaaattattatccgt 183  Q
    |||||||||||||||| ||||||||||||||||| ||||    
T  25948905 ttacactgaattatgtgattttttcaaattattagccgt 25948943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 187
Target Start/End: Original strand, 49651804 - 49651846
Alignment:
Q  145 ttacactgaattatgtcattttttcaaattattatccgtgtcg 187  Q
    ||||| |||||||||| ||||||||||||||||| ||||||||    
T  49651804 ttacagtgaattatgtgattttttcaaattattagccgtgtcg 49651846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 178
Target Start/End: Original strand, 51206370 - 51206404
Alignment:
Q  144 tttacactgaattatgtcattttttcaaattatta 178  Q
    ||||||||||||||||| |||||||||||||||||    
T  51206370 tttacactgaattatgtgattttttcaaattatta 51206404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 178
Target Start/End: Complemental strand, 10954993 - 10954960
Alignment:
Q  145 ttacactgaattatgtcattttttcaaattatta 178  Q
    |||||||||||||||| |||||||||||||||||    
T  10954993 ttacactgaattatgtgattttttcaaattatta 10954960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 178
Target Start/End: Complemental strand, 26508151 - 26508118
Alignment:
Q  145 ttacactgaattatgtcattttttcaaattatta 178  Q
    |||||||||||||||| |||||||||||||||||    
T  26508151 ttacactgaattatgtgattttttcaaattatta 26508118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 178
Target Start/End: Complemental strand, 28918042 - 28918009
Alignment:
Q  145 ttacactgaattatgtcattttttcaaattatta 178  Q
    |||||||||||||||| |||||||||||||||||    
T  28918042 ttacactgaattatgtgattttttcaaattatta 28918009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 105
Target Start/End: Original strand, 4987222 - 4987258
Alignment:
Q  69 atgaagtacggacactcctcggattagatgtgtcccg 105  Q
    |||||||||||||||||||||||||||  ||||||||    
T  4987222 atgaagtacggacactcctcggattaggcgtgtcccg 4987258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 105
Target Start/End: Complemental strand, 8903556 - 8903516
Alignment:
Q  65 agctatgaagtacggacactcctcggattagatgtgtcccg 105  Q
    |||||||||| ||| |||||||||||||||| |||||||||    
T  8903556 agctatgaagcacgaacactcctcggattaggtgtgtcccg 8903516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 187
Target Start/End: Original strand, 14223849 - 14223913
Alignment:
Q  123 gacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtcg 187  Q
    |||||||||||||||  ||||  |||||| |||||| || |||| ||||||||||||| ||||||    
T  14223849 gacaccgacacgacacttatgaatacactaaattatatcgttttctcaaattattatctgtgtcg 14223913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 174
Target Start/End: Complemental strand, 21367341 - 21367289
Alignment:
Q  122 cgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaatt 174  Q
    |||||||||||| ||| | ||| ||||||| |||||||||||||| |||||||    
T  21367341 cgacaccgacacaacaaccatgattacactaaattatgtcattttctcaaatt 21367289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 103
Target Start/End: Complemental strand, 21861694 - 21861658
Alignment:
Q  67 ctatgaagtacggacactcctcggattagatgtgtcc 103  Q
    |||||||| |||||||||||||||||||| |||||||    
T  21861694 ctatgaagcacggacactcctcggattaggtgtgtcc 21861658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 191
Target Start/End: Complemental strand, 28779609 - 28779557
Alignment:
Q  139 ctatgtttacactgaattatgtcattttttcaaattattatccgtgtcgtgtc 191  Q
    ||||| |||||||||||||||||||||| |||  |||||||  ||||||||||    
T  28779609 ctatgattacactgaattatgtcattttatcatgttattattggtgtcgtgtc 28779557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 178
Target Start/End: Original strand, 34307775 - 34307831
Alignment:
Q  122 cgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattatta 178  Q
    ||||||||||||||||  |||  |||||||||| ||||| ||||| |||||||||||    
T  34307775 cgacaccgacacgacacttataattacactgaaatatgtgattttctcaaattatta 34307831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 104 - 187
Target Start/End: Original strand, 20743255 - 20743338
Alignment:
Q  104 cgtgtcggtgtccgacatcgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtcg 187  Q
    |||||||||||| ||||||||||||||||| ||| ||||| |||||||||||||||||||||| ||||||||||||||||||||    
T  20743255 cgtgtcggtgtctgacatcgacaccgacacaacacctatgattacactgaattatgtcattttctcaaattattatccgtgtcg 20743338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 108 - 179
Target Start/End: Original strand, 31243529 - 31243600
Alignment:
Q  108 tcggtgtccgacatcgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattat 179  Q
    ||||||||||||| | ||||||||| |||| ||||| |||||||||||||||||||||| ||||||||||||    
T  31243529 tcggtgtccgacaccaacaccgacatgacacctatgattacactgaattatgtcattttctcaaattattat 31243600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 123 - 187
Target Start/End: Complemental strand, 24343570 - 24343506
Alignment:
Q  123 gacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtcg 187  Q
    ||||||||||||||| ||||  |||||||||||||||| ||||| ||||||||||||||||||||    
T  24343570 gacaccgacacgacacctataattacactgaattatgtaattttctcaaattattatccgtgtcg 24343506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 123 - 185
Target Start/End: Original strand, 3144648 - 3144710
Alignment:
Q  123 gacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgt 185  Q
    ||||||||||||||| ||||| ||||||| |||||| ||||||| | ||||||||||||||||    
T  3144648 gacaccgacacgacacctatgattacactaaattatatcattttctgaaattattatccgtgt 3144710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 145 - 187
Target Start/End: Complemental strand, 32910592 - 32910550
Alignment:
Q  145 ttacactgaattatgtcattttttcaaattattatccgtgtcg 187  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  32910592 ttacactgaattatgtcattttctcaaattattatccgtgtcg 32910550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 134 - 187
Target Start/End: Original strand, 34515881 - 34515934
Alignment:
Q  134 gacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtcg 187  Q
    |||| |||||||||||||||||||||||||||| |  |||||||||||||||||    
T  34515881 gacacctatgtttacactgaattatgtcattttcttgaattattatccgtgtcg 34515934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 145 - 187
Target Start/End: Complemental strand, 21945544 - 21945502
Alignment:
Q  145 ttacactgaattatgtcattttttcaaattattatccgtgtcg 187  Q
    |||||||||||||||||||||||||||||||||| | ||||||    
T  21945544 ttacactgaattatgtcattttttcaaattattagctgtgtcg 21945502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 107 - 187
Target Start/End: Complemental strand, 7012145 - 7012065
Alignment:
Q  107 gtcggtgtccgacatcgacaccgacac-gacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtcg 187  Q
    |||||||||||||| ||||||  |||| || | ||||| | |||||||||||||||||||| ||||||||||||| ||||||    
T  7012145 gtcggtgtccgacaccgacaca-acaccgatacctatgatcacactgaattatgtcattttctcaaattattatcggtgtcg 7012065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 124 - 180
Target Start/End: Original strand, 30520433 - 30520490
Alignment:
Q  124 acaccgacacgacatctatgtttacactgaattatgtca-ttttttcaaattattatc 180  Q
    |||| ||||| ||| ||||| |||||||||||||||||| ||||||||||||||||||    
T  30520433 acactgacactacacctatgattacactgaattatgtcatttttttcaaattattatc 30520490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 186
Target Start/End: Complemental strand, 37203305 - 37203264
Alignment:
Q  145 ttacactgaattatgtcattttttcaaattattatccgtgtc 186  Q
    ||||||| |||||||||||||||||||||||||| |||||||    
T  37203305 ttacactaaattatgtcattttttcaaattattagccgtgtc 37203264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 179
Target Start/End: Complemental strand, 53968606 - 53968553
Alignment:
Q  126 accgacacgacatctatgtttacactgaattatgtcattttttcaaattattat 179  Q
    |||||||||||||||||| |  ||||||||||||||||||| | ||||||||||    
T  53968606 accgacacgacatctatgatatcactgaattatgtcattttcttaaattattat 53968553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 187
Target Start/End: Original strand, 16402211 - 16402271
Alignment:
Q  127 ccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtcg 187  Q
    ||||||||||| ||||  |||||||| || |||| ||||| ||||||||||||||||||||    
T  16402211 ccgacacgacagctataattacactgtatcatgttattttctcaaattattatccgtgtcg 16402271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 103
Target Start/End: Original strand, 19230241 - 19230277
Alignment:
Q  67 ctatgaagtacggacactcctcggattagatgtgtcc 103  Q
    ||||||||||||||||||| |||||||||||||||||    
T  19230241 ctatgaagtacggacactcttcggattagatgtgtcc 19230277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 185
Target Start/End: Complemental strand, 29205485 - 29205445
Alignment:
Q  145 ttacactgaattatgtcattttttcaaattattatccgtgt 185  Q
    |||||||||||||||| ||||||||||||||||| ||||||    
T  29205485 ttacactgaattatgtgattttttcaaattattagccgtgt 29205445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 187
Target Start/End: Original strand, 5654604 - 5654651
Alignment:
Q  140 tatgtttacactgaattatgtcattttttcaaattattatccgtgtcg 187  Q
    |||| ||||| |||||||||||||||| ||||||||||||| ||||||    
T  5654604 tatgattacattgaattatgtcattttctcaaattattatcagtgtcg 5654651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 186
Target Start/End: Complemental strand, 6274023 - 6273944
Alignment:
Q  107 gtcggtgtccgacatcgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtc 186  Q
    |||| |||| |||| |||||||||||||||  ||||  ||||||| |||||| ||||||| |||||||||| || |||||    
T  6274023 gtcgatgtctgacaccgacaccgacacgacgactataattacactaaattatatcattttctcaaattattgtctgtgtc 6273944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 127
Target Start/End: Complemental strand, 35239229 - 35239178
Alignment:
Q  76 acggacactcctcggattagatgtgtcccgtgtcggtgtccgacatcgacac 127  Q
    ||||||||||||||||||||| |||||| | ||| |||||||||| ||||||    
T  35239229 acggacactcctcggattagacgtgtccagggtcagtgtccgacaccgacac 35239178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 186
Target Start/End: Original strand, 18513254 - 18513300
Alignment:
Q  140 tatgtttacactgaattatgtcattttttcaaattattatccgtgtc 186  Q
    |||| ||||| |||||||||||||||| ||||||||||||| |||||    
T  18513254 tatgattacattgaattatgtcattttctcaaattattatcggtgtc 18513300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 105
Target Start/End: Complemental strand, 30299048 - 30299010
Alignment:
Q  67 ctatgaagtacggacactcctcggattagatgtgtcccg 105  Q
    |||||||| ||||||||||||||||||||| ||||||||    
T  30299048 ctatgaagcacggacactcctcggattagacgtgtcccg 30299010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 105
Target Start/End: Complemental strand, 30327916 - 30327878
Alignment:
Q  67 ctatgaagtacggacactcctcggattagatgtgtcccg 105  Q
    |||||||| ||||||||||||||||||||| ||||||||    
T  30327916 ctatgaagcacggacactcctcggattagacgtgtcccg 30327878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 105
Target Start/End: Complemental strand, 40784072 - 40784034
Alignment:
Q  67 ctatgaagtacggacactcctcggattagatgtgtcccg 105  Q
    |||||||| |||||||||||||||||||| |||||||||    
T  40784072 ctatgaagcacggacactcctcggattaggtgtgtcccg 40784034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 186
Target Start/End: Original strand, 43299984 - 43300030
Alignment:
Q  140 tatgtttacactgaattatgtcattttttcaaattattatccgtgtc 186  Q
    |||| ||||| |||||||||| ||||| |||||||||||||||||||    
T  43299984 tatgattacattgaattatgtaattttctcaaattattatccgtgtc 43300030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 186
Target Start/End: Complemental strand, 43300662 - 43300616
Alignment:
Q  140 tatgtttacactgaattatgtcattttttcaaattattatccgtgtc 186  Q
    |||| ||||| |||||||||| ||||| |||||||||||||||||||    
T  43300662 tatgattacattgaattatgtaattttctcaaattattatccgtgtc 43300616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 179
Target Start/End: Original strand, 50848321 - 50848355
Alignment:
Q  145 ttacactgaattatgtcattttttcaaattattat 179  Q
    |||||||||||||| ||||||||||||||||||||    
T  50848321 ttacactgaattatatcattttttcaaattattat 50848355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 105
Target Start/End: Original strand, 53381530 - 53381568
Alignment:
Q  67 ctatgaagtacggacactcctcggattagatgtgtcccg 105  Q
    |||||||| |||||||||||||||||||| |||||||||    
T  53381530 ctatgaagcacggacactcctcggattaggtgtgtcccg 53381568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 178
Target Start/End: Original strand, 11596370 - 11596403
Alignment:
Q  145 ttacactgaattatgtcattttttcaaattatta 178  Q
    |||||||||||||||| |||||||||||||||||    
T  11596370 ttacactgaattatgtgattttttcaaattatta 11596403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 178
Target Start/End: Original strand, 28964266 - 28964299
Alignment:
Q  145 ttacactgaattatgtcattttttcaaattatta 178  Q
    |||||||||||||||| |||||||||||||||||    
T  28964266 ttacactgaattatgtgattttttcaaattatta 28964299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 178
Target Start/End: Original strand, 54580041 - 54580074
Alignment:
Q  145 ttacactgaattatgtcattttttcaaattatta 178  Q
    |||||||||||||||| |||||||||||||||||    
T  54580041 ttacactgaattatgtgattttttcaaattatta 54580074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 103
Target Start/End: Original strand, 824212 - 824252
Alignment:
Q  63 aaagctatgaagtacggacactcctcggattagatgtgtcc 103  Q
    |||||||||||| ||||||| ||||||||||||| ||||||    
T  824212 aaagctatgaagcacggacagtcctcggattagacgtgtcc 824252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 180
Target Start/End: Complemental strand, 10546194 - 10546154
Alignment:
Q  140 tatgtttacactgaattatgtcattttttcaaattattatc 180  Q
    |||| ||||| |||||||||||||||| |||||||||||||    
T  10546194 tatgattacattgaattatgtcattttctcaaattattatc 10546154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 64 - 179
Target Start/End: Original strand, 29812595 - 29812716
Alignment:
Q  64 aagctatgaagtacggacactcctcggattagatgtgtcccgtgtcggtgt------ccgacatcgacaccgacacgacatctatgtttacactgaatta 157  Q
    ||||||||||| ||||||||| ||||||||||  |||||||||||||||||      |||||| |||||||||||||||| ||||| ||||||| |||||    
T  29812595 aagctatgaagcacggacacttctcggattaggcgtgtcccgtgtcggtgtccgacaccgacaccgacaccgacacgacacctatgattacactaaatta 29812694  T
Q  158 tgtcattttttcaaattattat 179  Q
    | ||||||| ||||||||||||    
T  29812695 tatcattttctcaaattattat 29812716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 130 - 191
Target Start/End: Complemental strand, 13427632 - 13427571
Alignment:
Q  130 acacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtcgtgtc 191  Q
    |||||||||||||| ||| ||| ||||||||||||||||||||||||| |||||||||||||    
T  13427632 acacgacatctatgattatactaaattatgtcattttttcaaattattttccgtgtcgtgtc 13427571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 122 - 187
Target Start/End: Complemental strand, 23930283 - 23930218
Alignment:
Q  122 cgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtcg 187  Q
    |||||||||||| ||| ||||| |||||||||||||||||||||| |||||||| |||||||||||    
T  23930283 cgacaccgacacaacacctatgattacactgaattatgtcattttctcaaattactatccgtgtcg 23930218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 127 - 210
Target Start/End: Complemental strand, 23751959 - 23751876
Alignment:
Q  127 ccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtcgtgtccggtatccgtgtttgtgtc 210  Q
    ||||||||||| ||||| ||||||| |||||| ||||||| ||||||||||||||||||||| | || | || |||||||||||    
T  23751959 ccgacacgacacctatgattacactaaattatatcattttatcaaattattatccgtgtcgtattcgatgtctgtgtttgtgtc 23751876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 122 - 187
Target Start/End: Complemental strand, 43250057 - 43249992
Alignment:
Q  122 cgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtcg 187  Q
    ||||||||||||||||  |||  |||||||| ||||||||||||| ||||||||||||||||||||    
T  43250057 cgacaccgacacgacacttataattacactgtattatgtcattttctcaaattattatccgtgtcg 43249992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 122 - 180
Target Start/End: Original strand, 10230068 - 10230126
Alignment:
Q  122 cgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatc 180  Q
    ||||||| |||||||||||||  |||||||||||||||||||||  |||||||||||||    
T  10230068 cgacaccaacacgacatctatacttacactgaattatgtcatttcctcaaattattatc 10230126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 122 - 187
Target Start/End: Original strand, 7133273 - 7133338
Alignment:
Q  122 cgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtcg 187  Q
    ||||||||||||  || ||||| |||||||||||||||||||||| ||||||||| ||| ||||||    
T  7133273 cgacaccgacacaccacctatgattacactgaattatgtcattttctcaaattatcatctgtgtcg 7133338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 122 - 187
Target Start/End: Original strand, 38804550 - 38804615
Alignment:
Q  122 cgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtcg 187  Q
    ||||||| |||||||| ||||| |||| ||| ||||||||||||| | ||||||||||||||||||    
T  38804550 cgacaccaacacgacacctatgattaccctggattatgtcattttctgaaattattatccgtgtcg 38804615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 140 - 186
Target Start/End: Complemental strand, 44021021 - 44020975
Alignment:
Q  140 tatgtttacactgaattatgtcattttttcaaattattatccgtgtc 186  Q
    |||| ||||| |||||||||| |||||||||||||||||||||||||    
T  44021021 tatggttacattgaattatgtaattttttcaaattattatccgtgtc 44020975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 122 - 187
Target Start/End: Original strand, 4017789 - 4017854
Alignment:
Q  122 cgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtcg 187  Q
    ||||||| ||||||||  |||| ||||||| |||||| || |||| ||||||||||||||||||||    
T  4017789 cgacaccaacacgacacttatgattacactaaattatatcgttttctcaaattattatccgtgtcg 4017854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 186
Target Start/End: Original strand, 17780078 - 17780143
Alignment:
Q  121 tcgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtc 186  Q
    ||||||||||||||||| ||||  |||||  ||||||||||||||| | |||||||||||| ||||    
T  17780078 tcgacaccgacacgacacctattattacatagaattatgtcattttcttaaattattatccatgtc 17780143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 187
Target Start/End: Complemental strand, 1885614 - 1885572
Alignment:
Q  145 ttacactgaattatgtcattttttcaaattattatccgtgtcg 187  Q
    ||||| |||||||||||||||||||||| | ||||||||||||    
T  1885614 ttacattgaattatgtcattttttcaaaattttatccgtgtcg 1885572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 181
Target Start/End: Complemental strand, 5938535 - 5938477
Alignment:
Q  123 gacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatcc 181  Q
    ||||||||||| ||| ||||  ||| |||||||||||| ||||| ||||||||||||||    
T  5938535 gacaccgacacaacacctataattatactgaattatgttattttatcaaattattatcc 5938477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 185
Target Start/End: Complemental strand, 12278894 - 12278836
Alignment:
Q  127 ccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgt 185  Q
    |||||||||||  |||  |||||||||||||||||||||| | ||||||||||| ||||    
T  12278894 ccgacacgacacatataattacactgaattatgtcattttcttaaattattatcagtgt 12278836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 187
Target Start/End: Complemental strand, 24339683 - 24339641
Alignment:
Q  145 ttacactgaattatgtcattttttcaaattattatccgtgtcg 187  Q
    |||||||||||||||| ||||||||||||||||| | ||||||    
T  24339683 ttacactgaattatgtgattttttcaaattattagctgtgtcg 24339641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 187
Target Start/End: Complemental strand, 25481943 - 25481901
Alignment:
Q  145 ttacactgaattatgtcattttttcaaattattatccgtgtcg 187  Q
    |||||||||||||||| ||||||||||||||||| | ||||||    
T  25481943 ttacactgaattatgtgattttttcaaattattagctgtgtcg 25481901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 186
Target Start/End: Original strand, 38134419 - 38134465
Alignment:
Q  140 tatgtttacactgaattatgtcattttttcaaattattatccgtgtc 186  Q
    |||| ||||| |||||||||||||||| ||||||||||||| |||||    
T  38134419 tatgattacattgaattatgtcattttctcaaattattatcggtgtc 38134465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 103
Target Start/End: Complemental strand, 1433579 - 1433542
Alignment:
Q  66 gctatgaagtacggacactcctcggattagatgtgtcc 103  Q
    ||||||||| ||||||||||||||||||||| ||||||    
T  1433579 gctatgaagcacggacactcctcggattagacgtgtcc 1433542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 94
Target Start/End: Complemental strand, 14729824 - 14729795
Alignment:
Q  65 agctatgaagtacggacactcctcggatta 94  Q
    ||||||||||||||||||||||||||||||    
T  14729824 agctatgaagtacggacactcctcggatta 14729795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 109
Target Start/End: Original strand, 18035806 - 18035847
Alignment:
Q  68 tatgaagtacggacactcctcggattagatgtgtcccgtgtc 109  Q
    ||||||| ||||||||||||||||||||| |||| |||||||    
T  18035806 tatgaagcacggacactcctcggattagacgtgttccgtgtc 18035847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 183
Target Start/End: Original strand, 22683758 - 22683811
Alignment:
Q  130 acacgacatctatgtttacactgaattatgtcattttttcaaattattatccgt 183  Q
    |||||||| ||||| || ||||||||||| |||| || ||||||||||||||||    
T  22683758 acacgacacctatgattgcactgaattatatcatattctcaaattattatccgt 22683811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 178
Target Start/End: Original strand, 26033479 - 26033512
Alignment:
Q  145 ttacactgaattatgtcattttttcaaattatta 178  Q
    |||||||||||||||| |||||||||||||||||    
T  26033479 ttacactgaattatgtgattttttcaaattatta 26033512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 105
Target Start/End: Original strand, 32287404 - 32287441
Alignment:
Q  68 tatgaagtacggacactcctcggattagatgtgtcccg 105  Q
    ||||||| |||||||||||||||||||| |||||||||    
T  32287404 tatgaagcacggacactcctcggattaggtgtgtcccg 32287441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 204
Target Start/End: Complemental strand, 5954288 - 5954226
Alignment:
Q  145 ttacactgaattatgtcattttttcaaattatta---tccgtgtcgtgtccggtatccgtgtt 204  Q
    |||||||  ||||||| |||||||||||||||||   |||||||||||||| || ||||||||    
T  5954288 ttacactagattatgtaattttttcaaattattagtgtccgtgtcgtgtcctgtgtccgtgtt 5954226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 178
Target Start/End: Complemental strand, 8234186 - 8234154
Alignment:
Q  146 tacactgaattatgtcattttttcaaattatta 178  Q
    ||||||||||||||| |||||||||||||||||    
T  8234186 tacactgaattatgttattttttcaaattatta 8234154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 185
Target Start/End: Original strand, 18233616 - 18233656
Alignment:
Q  145 ttacactgaattatgtcattttttcaaattattatccgtgt 185  Q
    |||||||||||||||||||||| |||||||| |||| ||||    
T  18233616 ttacactgaattatgtcattttctcaaattactatctgtgt 18233656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 180
Target Start/End: Original strand, 30606077 - 30606117
Alignment:
Q  140 tatgtttacactgaattatgtcattttttcaaattattatc 180  Q
    |||| ||||| |||||||||||||||||| |||||||||||    
T  30606077 tatggttacattgaattatgtcattttttgaaattattatc 30606117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 104
Target Start/End: Original strand, 40131936 - 40131976
Alignment:
Q  64 aagctatgaagtacggacactcctcggattagatgtgtccc 104  Q
    ||||||||||| || |||||||||||||||||| |||||||    
T  40131936 aagctatgaagcacagacactcctcggattagacgtgtccc 40131976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 6e-24; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 107 - 187
Target Start/End: Original strand, 11307984 - 11308063
Alignment:
Q  107 gtcggtgtccgacatcgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtcg 187  Q
    |||||||||| ||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  11307984 gtcggtgtccaacaccgacaccgacacgacacctatgattacactgaattatgtcattttttcaaatta-tatccgtgtcg 11308063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 110 - 216
Target Start/End: Complemental strand, 30563485 - 30563379
Alignment:
Q  110 ggtgtccgacatcgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtcgtgtccggtatccgtgtttgtgt 209  Q
    |||||||||||  ||||||||||| ||| ||||  ||||| |||||||||||||||| ||||||||||||||||||||||||  || | |||||||||||    
T  30563485 ggtgtccgacactgacaccgacacaacacctatagttacattgaattatgtcattttctcaaattattatccgtgtcgtgtctagtgttcgtgtttgtgt 30563386  T
Q  210 ctgtgct 216  Q
     ||||||    
T  30563385 atgtgct 30563379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 107 - 186
Target Start/End: Original strand, 23354632 - 23354711
Alignment:
Q  107 gtcggtgtccgacatcgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtc 186  Q
    |||||||||||||  |||||||||||||||| ||||| ||||||| |||||| ||||||| ||||||||||||| |||||    
T  23354632 gtcggtgtccgaccccgacaccgacacgacacctatgattacactaaattatatcattttctcaaattattatctgtgtc 23354711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 110 - 187
Target Start/End: Complemental strand, 25544557 - 25544480
Alignment:
Q  110 ggtgtccgacatcgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtcg 187  Q
    |||||| ||||  ||||||||||||||| ||||| |||||||||||||| ||||||| |||||||||||| |||||||    
T  25544557 ggtgtctgacactgacaccgacacgacacctatgattacactgaattatatcattttctcaaattattatacgtgtcg 25544480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 125 - 187
Target Start/End: Original strand, 10535757 - 10535819
Alignment:
Q  125 caccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtcg 187  Q
    |||| ||||||||  |||| |||||||||||||||||||||| ||||||||||||| ||||||    
T  10535757 caccaacacgacacttatgattacactgaattatgtcattttctcaaattattatcggtgtcg 10535819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 123 - 180
Target Start/End: Complemental strand, 24011099 - 24011042
Alignment:
Q  123 gacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatc 180  Q
    ||||||||| ||||| ||||| ||||||| |||||||||||||| |||||||||||||    
T  24011099 gacaccgacgcgacacctatgattacactaaattatgtcattttctcaaattattatc 24011042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 186
Target Start/End: Complemental strand, 12748743 - 12748684
Alignment:
Q  127 ccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtc 186  Q
    ||||||| ||| ||||| |||||||||| ||||||||||| |||||||||||||| ||||    
T  12748743 ccgacacaacacctatgattacactgaactatgtcattttctcaaattattatccatgtc 12748684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 186
Target Start/End: Original strand, 23354975 - 23355054
Alignment:
Q  107 gtcggtgtccgacatcgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtc 186  Q
    |||||||||| ||  ||||||||||| |||| ||||| || |||| |||||| ||||||| ||||||||||||| |||||    
T  23354975 gtcggtgtccaaccccgacaccgacatgacacctatgattgcactaaattatatcattttctcaaattattatctgtgtc 23355054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 145 - 187
Target Start/End: Original strand, 30404868 - 30404910
Alignment:
Q  145 ttacactgaattatgtcattttttcaaattattatccgtgtcg 187  Q
    |||||||||||||||| ||||||||||||||||| ||||||||    
T  30404868 ttacactgaattatgtgattttttcaaattattaaccgtgtcg 30404910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 178
Target Start/End: Original strand, 12668441 - 12668474
Alignment:
Q  145 ttacactgaattatgtcattttttcaaattatta 178  Q
    ||||||||||||||||||||||||||||||||||    
T  12668441 ttacactgaattatgtcattttttcaaattatta 12668474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 122 - 187
Target Start/End: Complemental strand, 19574042 - 19573977
Alignment:
Q  122 cgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtcg 187  Q
    ||||||||||||| || ||||  |||||||||||||||| ||||| | ||||||||||| ||||||    
T  19574042 cgacaccgacacgccacctataattacactgaattatgttattttcttaaattattatcggtgtcg 19573977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 122 - 187
Target Start/End: Complemental strand, 37986843 - 37986778
Alignment:
Q  122 cgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtcg 187  Q
    ||||||| |||||| | ||||| ||||||| || ||| ||||||||||||||||||||| ||||||    
T  37986843 cgacaccaacacgatacctatgattacactcaaatatatcattttttcaaattattatctgtgtcg 37986778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 187
Target Start/End: Complemental strand, 25317172 - 25317136
Alignment:
Q  151 tgaattatgtcattttttcaaattattatccgtgtcg 187  Q
    |||||||||||||||||||||||||||||| ||||||    
T  25317172 tgaattatgtcattttttcaaattattatcggtgtcg 25317136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 180
Target Start/End: Original strand, 34006997 - 34007044
Alignment:
Q  133 cgacatctatgtttacactgaattatgtcattttttcaaattattatc 180  Q
    ||||| ||||| |||||||||||||||||| ||| |||||||||||||    
T  34006997 cgacacctatgattacactgaattatgtcaatttctcaaattattatc 34007044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 105
Target Start/End: Original strand, 18840953 - 18840991
Alignment:
Q  67 ctatgaagtacggacactcctcggattagatgtgtcccg 105  Q
    |||||||| |||||||||||||||||||| |||||||||    
T  18840953 ctatgaagcacggacactcctcggattaggtgtgtcccg 18840991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 187
Target Start/End: Original strand, 21374717 - 21374759
Alignment:
Q  145 ttacactgaattatgtcattttttcaaattattatccgtgtcg 187  Q
    |||||||||||||||| ||||||||||||||||| | ||||||    
T  21374717 ttacactgaattatgtaattttttcaaattattagctgtgtcg 21374759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 187
Target Start/End: Complemental strand, 28677950 - 28677908
Alignment:
Q  145 ttacactgaattatgtcattttttcaaattattatccgtgtcg 187  Q
    |||||||||||||||| ||||||||||||||||| | ||||||    
T  28677950 ttacactgaattatgtgattttttcaaattattagcggtgtcg 28677908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 187
Target Start/End: Original strand, 30298465 - 30298507
Alignment:
Q  145 ttacactgaattatgtcattttttcaaattattatccgtgtcg 187  Q
    |||||||||||||||||||||| | ||||||||||| ||||||    
T  30298465 ttacactgaattatgtcattttattaaattattatcggtgtcg 30298507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 185
Target Start/End: Complemental strand, 18571018 - 18570973
Alignment:
Q  140 tatgtttacactgaattatgtcattttttcaaattattatccgtgt 185  Q
    |||| ||||| |||||||||||||||| ||||||||||||| ||||    
T  18571018 tatgattacattgaattatgtcattttctcaaattattatcggtgt 18570973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 178
Target Start/End: Complemental strand, 30335458 - 30335425
Alignment:
Q  145 ttacactgaattatgtcattttttcaaattatta 178  Q
    ||||||| ||||||||||||||||||||||||||    
T  30335458 ttacactaaattatgtcattttttcaaattatta 30335425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 178
Target Start/End: Original strand, 30717548 - 30717581
Alignment:
Q  145 ttacactgaattatgtcattttttcaaattatta 178  Q
    |||||||||||||||| |||||||||||||||||    
T  30717548 ttacactgaattatgtgattttttcaaattatta 30717581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 186
Target Start/End: Complemental strand, 40682023 - 40681982
Alignment:
Q  145 ttacactgaattatgtcattttttcaaattattatccgtgtc 186  Q
    ||||| |||||||||||||||| ||||||||||||| |||||    
T  40682023 ttacattgaattatgtcattttctcaaattattatcggtgtc 40681982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 186
Target Start/End: Complemental strand, 42418906 - 42418869
Alignment:
Q  149 actgaattatgtcattttttcaaattattatccgtgtc 186  Q
    |||||||||||||||||||||||||| |||| ||||||    
T  42418906 actgaattatgtcattttttcaaatttttatacgtgtc 42418869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 104
Target Start/End: Original strand, 42511318 - 42511359
Alignment:
Q  63 aaagctatgaagtacggacactcctcggattagatgtgtccc 104  Q
    |||||||||||| ||||||||||||||||||||  |||||||    
T  42511318 aaagctatgaagcacggacactcctcggattagccgtgtccc 42511359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 180
Target Start/End: Original strand, 6698453 - 6698513
Alignment:
Q  121 tcgacaccgacacgacatctatgtttacactgaattatgtca-ttttttcaaattattatc 180  Q
    |||||||| | ||||||  |||| |||||||||||||| ||| ||||||||||||||||||    
T  6698453 tcgacaccaatacgacacgtatgattacactgaattatttcacttttttcaaattattatc 6698513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 179
Target Start/End: Complemental strand, 24894520 - 24894492
Alignment:
Q  151 tgaattatgtcattttttcaaattattat 179  Q
    |||||||||||||||||||||||||||||    
T  24894520 tgaattatgtcattttttcaaattattat 24894492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 133
Target Start/End: Complemental strand, 44635613 - 44635546
Alignment:
Q  66 gctatgaagtacggacactcctcggattagatgtgtc-ccgtgtcggtgtccgacatcgacaccgacac 133  Q
    ||||||||| ||||||||||||| ||||||  ||||| | ||||| |||||||||| ||||||||||||    
T  44635613 gctatgaagcacggacactcctcagattaggcgtgtctcggtgtc-gtgtccgacaccgacaccgacac 44635546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 29)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 123 - 186
Target Start/End: Complemental strand, 34446628 - 34446565
Alignment:
Q  123 gacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtc 186  Q
    ||||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||||    
T  34446628 gacaccgacacgacacctatgattacactgaattatgtcattttctcaaattattatccgtgtc 34446565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 66 - 178
Target Start/End: Original strand, 30781232 - 30781345
Alignment:
Q  66 gctatgaagtacggacactcctcggattagatgtgtcccg-tgtcggtgtccgacatcgacaccgacacgacatctatgtttacactgaattatgtcatt 164  Q
    ||||||||| ||| |||||||||||||||  ||||||||| |||| ||||| || || |||||||||| |||| ||||| ||||| | ||||||||||||    
T  30781232 gctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcagtgtctgatattgacaccgacatgacacctatgattacaattaattatgtcatt 30781331  T
Q  165 ttttcaaattatta 178  Q
    || |||||||||||    
T  30781332 ttctcaaattatta 30781345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 87 - 187
Target Start/End: Complemental strand, 34229548 - 34229453
Alignment:
Q  87 tcggattagatgtgtcccgtgtcggtgtccgacatcgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtc 186  Q
    |||||||||||||||||||     |||||||||| ||||||| ||||| |||||||  ||||||||| || |||||||||||||||||||||||| ||||    
T  34229548 tcggattagatgtgtcccg-----gtgtccgacaccgacaccaacacggcatctattattacactgacttgtgtcattttttcaaattattatccatgtc 34229454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 129 - 193
Target Start/End: Original strand, 12235521 - 12235585
Alignment:
Q  129 gacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtcgtgtccg 193  Q
    ||||||||| ||||| |||||||||||||||||||||| || |||||||||||||||| ||||||    
T  12235521 gacacgacacctatgattacactgaattatgtcattttctctaattattatccgtgtcatgtccg 12235585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 124 - 187
Target Start/End: Complemental strand, 6389805 - 6389742
Alignment:
Q  124 acaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtcg 187  Q
    |||||||||||||| ||||| ||||||| |||||| ||||||| ||||||||||||||||||||    
T  6389805 acaccgacacgacacctatgattacactaaattatatcattttctcaaattattatccgtgtcg 6389742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 127 - 187
Target Start/End: Original strand, 12086345 - 12086405
Alignment:
Q  127 ccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtcg 187  Q
    ||||||||||| ||||| ||| |||||||||||||||| | ||||||||||||||||||||    
T  12086345 ccgacacgacacctatgattaaactgaattatgtcattatctcaaattattatccgtgtcg 12086405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 145 - 186
Target Start/End: Complemental strand, 28715336 - 28715295
Alignment:
Q  145 ttacactgaattatgtcattttttcaaattattatccgtgtc 186  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  28715336 ttacactgaattatgtcattttttcaaattattagccgtgtc 28715295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 117 - 185
Target Start/End: Original strand, 19602171 - 19602239
Alignment:
Q  117 gacatcgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgt 185  Q
    ||||| ||||||||||| | | ||||| |||||||||||||| ||||||| ||||||||||||| ||||    
T  19602171 gacatggacaccgacacaatacctatgattacactgaattatatcattttctcaaattattatcagtgt 19602239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 185
Target Start/End: Original strand, 17168458 - 17168521
Alignment:
Q  122 cgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgt 185  Q
    |||||||||||||||| ||||  ||||||| |||||| ||||||| ||||||||||||| ||||    
T  17168458 cgacaccgacacgacacctattattacactaaattatatcattttctcaaattattatcagtgt 17168521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 195
Target Start/End: Original strand, 25010225 - 25010270
Alignment:
Q  150 ctgaattatgtcattttttcaaattattatccgtgtcgtgtccggt 195  Q
    ||||||||||| ||||||||||||||||| | ||||||||||||||    
T  25010225 ctgaattatgtgattttttcaaattattagctgtgtcgtgtccggt 25010270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 180
Target Start/End: Complemental strand, 17168935 - 17168900
Alignment:
Q  145 ttacactgaattatgtcattttttcaaattattatc 180  Q
    ||||| ||||||||||||||||||||||||||||||    
T  17168935 ttacattgaattatgtcattttttcaaattattatc 17168900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 187
Target Start/End: Original strand, 5970126 - 5970168
Alignment:
Q  145 ttacactgaattatgtcattttttcaaattattatccgtgtcg 187  Q
    |||||||||||||||| ||||||||||||||||| | ||||||    
T  5970126 ttacactgaattatgtgattttttcaaattattaactgtgtcg 5970168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 187
Target Start/End: Original strand, 7977848 - 7977890
Alignment:
Q  145 ttacactgaattatgtcattttttcaaattattatccgtgtcg 187  Q
    |||||||||||||||| ||||||||||||||||| | ||||||    
T  7977848 ttacactgaattatgtaattttttcaaattattagctgtgtcg 7977890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 187
Target Start/End: Complemental strand, 12696365 - 12696323
Alignment:
Q  145 ttacactgaattatgtcattttttcaaattattatccgtgtcg 187  Q
    |||||||||||||||| ||||||||||||||||| | ||||||    
T  12696365 ttacactgaattatgtaattttttcaaattattagctgtgtcg 12696323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 187
Target Start/End: Complemental strand, 16766738 - 16766696
Alignment:
Q  145 ttacactgaattatgtcattttttcaaattattatccgtgtcg 187  Q
    |||||||||||||||| ||||||||||||||||| | ||||||    
T  16766738 ttacactgaattatgtgattttttcaaattattagctgtgtcg 16766696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 105
Target Start/End: Complemental strand, 34595253 - 34595215
Alignment:
Q  67 ctatgaagtacggacactcctcggattagatgtgtcccg 105  Q
    |||||||| |||||||||||||||||||| |||||||||    
T  34595253 ctatgaagcacggacactcctcggattaggtgtgtcccg 34595215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 178
Target Start/End: Original strand, 10770692 - 10770725
Alignment:
Q  145 ttacactgaattatgtcattttttcaaattatta 178  Q
    |||||||||||||||| |||||||||||||||||    
T  10770692 ttacactgaattatgtgattttttcaaattatta 10770725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 183
Target Start/End: Complemental strand, 26247490 - 26247429
Alignment:
Q  122 cgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgt 183  Q
    |||||||||||||| | ||||| ||| ||| || ||||||||||| | ||||||||||||||    
T  26247490 cgacaccgacacgaaacctatgattatactaaaatatgtcattttcttaaattattatccgt 26247429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 178
Target Start/End: Complemental strand, 31384961 - 31384928
Alignment:
Q  145 ttacactgaattatgtcattttttcaaattatta 178  Q
    |||||||||||||||| |||||||||||||||||    
T  31384961 ttacactgaattatgtgattttttcaaattatta 31384928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 105
Target Start/End: Complemental strand, 31959268 - 31959231
Alignment:
Q  68 tatgaagtacggacactcctcggattagatgtgtcccg 105  Q
    ||||||| |||||||||||||||||||| |||||||||    
T  31959268 tatgaagcacggacactcctcggattaggtgtgtcccg 31959231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 178
Target Start/End: Complemental strand, 34595175 - 34595142
Alignment:
Q  145 ttacactgaattatgtcattttttcaaattatta 178  Q
    |||||||||||||||| |||||||||||||||||    
T  34595175 ttacactgaattatgtgattttttcaaattatta 34595142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 111
Target Start/End: Complemental strand, 4878061 - 4878017
Alignment:
Q  67 ctatgaagtacggacactcctcggattagatgtgtcccgtgtcgg 111  Q
    |||||||| ||||||||||||||||||||  |||||| |||||||    
T  4878061 ctatgaagcacggacactcctcggattaggcgtgtcctgtgtcgg 4878017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 187
Target Start/End: Complemental strand, 6299567 - 6299511
Alignment:
Q  131 cacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtcg 187  Q
    ||||||| ||||  ||||| |||||||| ||||||| |||||||||||||| |||||    
T  6299567 cacgacacctatcattacattgaattatatcattttctcaaattattatccatgtcg 6299511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 187
Target Start/End: Complemental strand, 6306377 - 6306321
Alignment:
Q  131 cacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtcg 187  Q
    ||||||| ||||  ||||| |||||||| ||||||| |||||||||||||| |||||    
T  6306377 cacgacacctatcattacattgaattatatcattttctcaaattattatccatgtcg 6306321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 111
Target Start/End: Complemental strand, 6389851 - 6389807
Alignment:
Q  67 ctatgaagtacggacactcctcggattagatgtgtcccgtgtcgg 111  Q
    |||||||| ||||||||| ||||||||||  ||||||||||||||    
T  6389851 ctatgaagcacggacacttctcggattaggagtgtcccgtgtcgg 6389807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 185
Target Start/End: Original strand, 7569186 - 7569226
Alignment:
Q  145 ttacactgaattatgtcattttttcaaattattatccgtgt 185  Q
    |||||||||||||||| ||||| ||||||||||||| ||||    
T  7569186 ttacactgaattatgtaattttctcaaattattatctgtgt 7569226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 210
Target Start/End: Complemental strand, 12787784 - 12787756
Alignment:
Q  182 gtgtcgtgtccggtatccgtgtttgtgtc 210  Q
    |||||||||||||||||||||||||||||    
T  12787784 gtgtcgtgtccggtatccgtgtttgtgtc 12787756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 177
Target Start/End: Original strand, 16388251 - 16388283
Alignment:
Q  145 ttacactgaattatgtcattttttcaaattatt 177  Q
    |||||||||||||||| ||||||||||||||||    
T  16388251 ttacactgaattatgtgattttttcaaattatt 16388283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 180
Target Start/End: Original strand, 34541747 - 34541803
Alignment:
Q  124 acaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatc 180  Q
    ||||||||| ||||  |||| ||||| |||||| |||||||||||| ||||||||||    
T  34541747 acaccgacatgacacatatgattacattgaattttgtcattttttctaattattatc 34541803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 122 - 193
Target Start/End: Complemental strand, 43554585 - 43554514
Alignment:
Q  122 cgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtcgtgtccg 193  Q
    |||||||||||||||| ||||| ||||||| |||||| ||||||| |||||||||||| |||||||||||||    
T  43554585 cgacaccgacacgacacctatgattacactaaattatatcattttctcaaattattatacgtgtcgtgtccg 43554514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 109 - 187
Target Start/End: Original strand, 18607079 - 18607157
Alignment:
Q  109 cggtgtccgacatcgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtcg 187  Q
    ||||||| |||| | |||| ||||||||| ||||| ||||| |||||||||| ||||| |||||||||||||| |||||    
T  18607079 cggtgtcggacaccaacacagacacgacacctatgattacattgaattatgttattttctcaaattattatccatgtcg 18607157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 145 - 186
Target Start/End: Complemental strand, 4344783 - 4344742
Alignment:
Q  145 ttacactgaattatgtcattttttcaaattattatccgtgtc 186  Q
    |||||||||||||||||||||||||||||||||||| |||||    
T  4344783 ttacactgaattatgtcattttttcaaattattatcggtgtc 4344742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 123 - 180
Target Start/End: Original strand, 5467974 - 5468031
Alignment:
Q  123 gacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatc 180  Q
    ||||||||||||||| ||||  |||||||||||||||| ||||| |||||||||||||    
T  5467974 gacaccgacacgacacctataattacactgaattatgtgattttatcaaattattatc 5468031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 145 - 185
Target Start/End: Original strand, 24906319 - 24906359
Alignment:
Q  145 ttacactgaattatgtcattttttcaaattattatccgtgt 185  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  24906319 ttacactgaattatgtcattttttcaaattattatctgtgt 24906359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 123 - 187
Target Start/End: Original strand, 39695995 - 39696059
Alignment:
Q  123 gacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtcg 187  Q
    ||||||||||||||| ||||| ||||||| |||||| ||||||| |||||||||| || ||||||    
T  39695995 gacaccgacacgacacctatgattacactaaattatatcattttctcaaattattgtcggtgtcg 39696059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 145 - 187
Target Start/End: Original strand, 13287417 - 13287459
Alignment:
Q  145 ttacactgaattatgtcattttttcaaattattatccgtgtcg 187  Q
    |||||||||||||||| ||||||||||||||||||| ||||||    
T  13287417 ttacactgaattatgtgattttttcaaattattatctgtgtcg 13287459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 122 - 172
Target Start/End: Original strand, 26205755 - 26205805
Alignment:
Q  122 cgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaa 172  Q
    ||||||| |||||||| ||||| |||||||||||||||||||||| |||||    
T  26205755 cgacaccaacacgacacctatgattacactgaattatgtcattttctcaaa 26205805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 145 - 187
Target Start/End: Original strand, 38749581 - 38749623
Alignment:
Q  145 ttacactgaattatgtcattttttcaaattattatccgtgtcg 187  Q
    ||||| |||||||||||||||||||||||||||||| ||||||    
T  38749581 ttacattgaattatgtcattttttcaaattattatcggtgtcg 38749623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 186
Target Start/End: Complemental strand, 18162096 - 18162055
Alignment:
Q  145 ttacactgaattatgtcattttttcaaattattatccgtgtc 186  Q
    |||||||||||||||||||||| | |||||||||||||||||    
T  18162096 ttacactgaattatgtcattttcttaaattattatccgtgtc 18162055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 178
Target Start/End: Complemental strand, 31264495 - 31264446
Alignment:
Q  129 gacacgacatctatgtttacactgaattatgtcattttttcaaattatta 178  Q
    |||||||||  |||| |||||||||||||||||||||| |||||||||||    
T  31264495 gacacgacacttatgattacactgaattatgtcattttctcaaattatta 31264446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 111
Target Start/End: Complemental strand, 17123166 - 17123122
Alignment:
Q  67 ctatgaagtacggacactcctcggattagatgtgtcccgtgtcgg 111  Q
    |||||||| ||||||||||||||||||||  ||||||||||||||    
T  17123166 ctatgaagcacggacactcctcggattaggcgtgtcccgtgtcgg 17123122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 187
Target Start/End: Complemental strand, 42469268 - 42469220
Alignment:
Q  139 ctatgtttacactgaattatgtcattttttcaaattattatccgtgtcg 187  Q
    ||||| ||||||| || ||||||||||| ||||||||||||||||||||    
T  42469268 ctatgattacactaaaatatgtcattttctcaaattattatccgtgtcg 42469220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 187
Target Start/End: Original strand, 2577193 - 2577240
Alignment:
Q  140 tatgtttacactgaattatgtcattttttcaaattattatccgtgtcg 187  Q
    |||| ||||||| |||||||||||||| ||||||||||||| ||||||    
T  2577193 tatgattacactaaattatgtcattttctcaaattattatcggtgtcg 2577240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 185
Target Start/End: Original strand, 7997166 - 7997224
Alignment:
Q  127 ccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgt 185  Q
    |||||||||||  |||  |||||||| ||||| ||||||| ||||||||||||||||||    
T  7997166 ccgacacgacacttataattacactgtattatatcattttctcaaattattatccgtgt 7997224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 183
Target Start/End: Original strand, 18586291 - 18586344
Alignment:
Q  129 gacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgt 183  Q
    ||||||||| ||||  |||||||| ||||||||| ||||||||||||||||||||    
T  18586291 gacacgacacctataattacactgtattatgtca-tttttcaaattattatccgt 18586344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 187
Target Start/End: Original strand, 21191074 - 21191116
Alignment:
Q  145 ttacactgaattatgtcattttttcaaattattatccgtgtcg 187  Q
    |||||||||||||||| ||||||||||||||||| | ||||||    
T  21191074 ttacactgaattatgtgattttttcaaattattagctgtgtcg 21191116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 187
Target Start/End: Complemental strand, 43001841 - 43001799
Alignment:
Q  145 ttacactgaattatgtcattttttcaaattattatccgtgtcg 187  Q
    |||||||||||||||| ||||||||||||||||| | ||||||    
T  43001841 ttacactgaattatgtaattttttcaaattattagcagtgtcg 43001799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 178
Target Start/End: Complemental strand, 6247663 - 6247630
Alignment:
Q  145 ttacactgaattatgtcattttttcaaattatta 178  Q
    |||||||||||||||| |||||||||||||||||    
T  6247663 ttacactgaattatgtgattttttcaaattatta 6247630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 186
Target Start/End: Original strand, 6471907 - 6471948
Alignment:
Q  145 ttacactgaattatgtcattttttcaaattattatccgtgtc 186  Q
    |||||||||||||||| ||||| ||||||||||| |||||||    
T  6471907 ttacactgaattatgtgattttctcaaattattagccgtgtc 6471948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 94
Target Start/End: Original strand, 17593661 - 17593690
Alignment:
Q  65 agctatgaagtacggacactcctcggatta 94  Q
    ||||||||||||||||||||||||||||||    
T  17593661 agctatgaagtacggacactcctcggatta 17593690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 186
Target Start/End: Original strand, 18288053 - 18288110
Alignment:
Q  129 gacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtc 186  Q
    |||| |||| ||||| ||| ||||| ||| |||||||| |||||||||||||||||||    
T  18288053 gacatgacacctatgattatactgagttaagtcattttctcaaattattatccgtgtc 18288110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 178
Target Start/End: Original strand, 21576763 - 21576796
Alignment:
Q  145 ttacactgaattatgtcattttttcaaattatta 178  Q
    |||||||||||||||| |||||||||||||||||    
T  21576763 ttacactgaattatgtgattttttcaaattatta 21576796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 179
Target Start/End: Complemental strand, 25863268 - 25863211
Alignment:
Q  122 cgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattat 179  Q
    |||||| |||||||||  |||  |||||||||||||| ||||||| ||||||||||||    
T  25863268 cgacactgacacgacacttataattacactgaattatatcattttctcaaattattat 25863211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 187
Target Start/End: Complemental strand, 28296368 - 28296327
Alignment:
Q  146 tacactgaattatgtcattttttcaaattattatccgtgtcg 187  Q
    |||| |||||||||||||||| ||||||||||||| ||||||    
T  28296368 tacattgaattatgtcattttctcaaattattatcggtgtcg 28296327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 178
Target Start/End: Complemental strand, 39698582 - 39698549
Alignment:
Q  145 ttacactgaattatgtcattttttcaaattatta 178  Q
    |||||||||||||||| |||||||||||||||||    
T  39698582 ttacactgaattatgtgattttttcaaattatta 39698549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 104
Target Start/End: Complemental strand, 3966632 - 3966596
Alignment:
Q  68 tatgaagtacggacactcctcggattagatgtgtccc 104  Q
    ||||||| ||||||||||||||||||||| |||||||    
T  3966632 tatgaagcacggacactcctcggattagacgtgtccc 3966596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 127
Target Start/End: Complemental strand, 6247729 - 6247670
Alignment:
Q  67 ctatgaagtacggacactcctcggattagatgtgtcccgtgtcggtgtccgacatcgacac 127  Q
    |||||||| || |||||| |||||||||| ||||||||||| | |||||||||| ||||||    
T  6247729 ctatgaagcacagacacttctcggattaggtgtgtcccgtg-ccgtgtccgacaccgacac 6247670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 178
Target Start/End: Complemental strand, 21137749 - 21137697
Alignment:
Q  126 accgacacgacatctatgtttacactgaattatgtcattttttcaaattatta 178  Q
    |||||||||||| ||||| || |||||||||| |||||||| ||| |||||||    
T  21137749 accgacacgacacctatgatttcactgaattacgtcattttctcagattatta 21137697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 8e-17; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 111 - 187
Target Start/End: Complemental strand, 44067590 - 44067515
Alignment:
Q  111 gtgtccgacatcgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtcg 187  Q
    |||||||||| ||||||||||||||||  |||  |||||||| ||||||||||||| ||||||||||||||||||||    
T  44067590 gtgtccgaca-cgacaccgacacgacacttataattacactgtattatgtcattttctcaaattattatccgtgtcg 44067515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 124 - 180
Target Start/End: Complemental strand, 8017548 - 8017492
Alignment:
Q  124 acaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatc 180  Q
    |||| ||||||||||||||| ||||||| |||||||||||||||||| |||||||||    
T  8017548 acactgacacgacatctatgattacactcaattatgtcattttttcatattattatc 8017492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 127 - 187
Target Start/End: Complemental strand, 1676771 - 1676711
Alignment:
Q  127 ccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtcg 187  Q
    ||||||||||| ||||| ||||||| || |||||||||||  |||||||||||||||||||    
T  1676771 ccgacacgacacctatgattacactaaaatatgtcattttcacaaattattatccgtgtcg 1676711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 107 - 187
Target Start/End: Original strand, 13009473 - 13009553
Alignment:
Q  107 gtcggtgtccgacatcgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtcg 187  Q
    ||||||||| |||| | ||||||||||||||  |||| ||||||| |||||| |  |||| ||||||||||||||||||||    
T  13009473 gtcggtgtctgacacctacaccgacacgacacttatgattacactaaattatattgttttctcaaattattatccgtgtcg 13009553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 111 - 179
Target Start/End: Complemental strand, 13845309 - 13845241
Alignment:
Q  111 gtgtccgacatcgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattat 179  Q
    |||||||||| |||||| ||||||||| ||||| |||| || |||||| ||||||| ||||||||||||    
T  13845309 gtgtccgacaccgacacagacacgacacctatgattactctaaattatatcattttctcaaattattat 13845241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 127 - 183
Target Start/End: Original strand, 35431140 - 35431196
Alignment:
Q  127 ccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgt 183  Q
    ||||||||||| ||||| ||||||| || ||||||||||| ||||||||||||||||    
T  35431140 ccgacacgacacctatgattacactaaaatatgtcattttctcaaattattatccgt 35431196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 123 - 179
Target Start/End: Complemental strand, 40064014 - 40063958
Alignment:
Q  123 gacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattat 179  Q
    ||||||||||||||  ||||| ||||| |||||||||||||||| ||||||||||||    
T  40064014 gacaccgacacgacgcctatgattacaatgaattatgtcattttctcaaattattat 40063958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 111 - 185
Target Start/End: Original strand, 16869699 - 16869773
Alignment:
Q  111 gtgtccgacatcgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgt 185  Q
    |||||||||| ||||||| |||||||| | ||| ||| | |||||||||||||||| | |||||||| |||||||    
T  16869699 gtgtccgacaccgacaccaacacgacaccaatgattatagtgaattatgtcattttcttaaattattttccgtgt 16869773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 149 - 186
Target Start/End: Original strand, 30068050 - 30068087
Alignment:
Q  149 actgaattatgtcattttttcaaattattatccgtgtc 186  Q
    |||||||||||||||||| |||||||||||||||||||    
T  30068050 actgaattatgtcattttctcaaattattatccgtgtc 30068087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 179
Target Start/End: Original strand, 14513170 - 14513226
Alignment:
Q  123 gacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattat 179  Q
    ||||||||||| | ||||||| |||| ||||||||||| ||||| ||||||||||||    
T  14513170 gacaccgacaccaaatctatgattacgctgaattatgtaattttctcaaattattat 14513226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 105
Target Start/End: Complemental strand, 22652108 - 22652068
Alignment:
Q  65 agctatgaagtacggacactcctcggattagatgtgtcccg 105  Q
    |||||||||| ||||||||||||||||||||| ||||||||    
T  22652108 agctatgaagcacggacactcctcggattagacgtgtcccg 22652068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 179
Target Start/End: Complemental strand, 39820488 - 39820436
Alignment:
Q  127 ccgacacgacatctatgtttacactgaattatgtcattttttcaaattattat 179  Q
    ||||||||||| ||||| ||||||| |||||| ||||||| ||||||||||||    
T  39820488 ccgacacgacacctatgattacactaaattatatcattttctcaaattattat 39820436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 178
Target Start/End: Complemental strand, 18646223 - 18646180
Alignment:
Q  135 acatctatgtttacactgaattatgtcattttttcaaattatta 178  Q
    |||| |||| ||||||||||| ||||||||||||||||||||||    
T  18646223 acatatatgattacactgaatcatgtcattttttcaaattatta 18646180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 184
Target Start/End: Original strand, 28883880 - 28883935
Alignment:
Q  129 gacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtg 184  Q
    |||| |||| ||||| || ||||||||||||||||||| |||||||||||| ||||    
T  28883880 gacaagacacctatgattccactgaattatgtcattttctcaaattattattcgtg 28883935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 105
Target Start/End: Original strand, 29510233 - 29510271
Alignment:
Q  67 ctatgaagtacggacactcctcggattagatgtgtcccg 105  Q
    |||||||| |||||||||||||||||||| |||||||||    
T  29510233 ctatgaagcacggacactcctcggattaggtgtgtcccg 29510271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 111
Target Start/End: Complemental strand, 39820549 - 39820503
Alignment:
Q  65 agctatgaagtacggacactcctcggattagatgtgtcccgtgtcgg 111  Q
    |||||||||| ||||||||| ||||||||||  ||||||||||||||    
T  39820549 agctatgaagcacggacacttctcggattaggcgtgtcccgtgtcgg 39820503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 105
Target Start/End: Complemental strand, 40064081 - 40064043
Alignment:
Q  67 ctatgaagtacggacactcctcggattagatgtgtcccg 105  Q
    ||||| || ||||||||||||||||||||||||||||||    
T  40064081 ctatgtagcacggacactcctcggattagatgtgtcccg 40064043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 187
Target Start/End: Original strand, 41831958 - 41832000
Alignment:
Q  145 ttacactgaattatgtcattttttcaaattattatccgtgtcg 187  Q
    |||||||||||||||| ||||||||||||||||| | ||||||    
T  41831958 ttacactgaattatgtgattttttcaaattattaactgtgtcg 41832000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 187
Target Start/End: Complemental strand, 3658203 - 3658146
Alignment:
Q  130 acacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtcg 187  Q
    |||||||| ||||| |||||||||| ||  | ||||| ||||||||||||||||||||    
T  3658203 acacgacacctatgattacactgaactacattattttctcaaattattatccgtgtcg 3658146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 178
Target Start/End: Complemental strand, 4948693 - 4948660
Alignment:
Q  145 ttacactgaattatgtcattttttcaaattatta 178  Q
    |||||||||||||||| |||||||||||||||||    
T  4948693 ttacactgaattatgtgattttttcaaattatta 4948660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 103
Target Start/End: Complemental strand, 13203733 - 13203700
Alignment:
Q  70 tgaagtacggacactcctcggattagatgtgtcc 103  Q
    ||||| ||||||||||||||||||||||||||||    
T  13203733 tgaagcacggacactcctcggattagatgtgtcc 13203700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 178
Target Start/End: Complemental strand, 25566882 - 25566849
Alignment:
Q  145 ttacactgaattatgtcattttttcaaattatta 178  Q
    |||||||||||||||| |||||||||||||||||    
T  25566882 ttacactgaattatgtgattttttcaaattatta 25566849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 187
Target Start/End: Original strand, 26915235 - 26915300
Alignment:
Q  122 cgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtcg 187  Q
    ||||||||||||||||  | || ||||| | |||||||||||||| ||||| | ||||||||||||    
T  26915235 cgacaccgacacgacacttgtgattacattaaattatgtcattttctcaaaattttatccgtgtcg 26915300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 186
Target Start/End: Complemental strand, 28642449 - 28642408
Alignment:
Q  145 ttacactgaattatgtcattttttcaaattattatccgtgtc 186  Q
    |||||||||||||||| | ||||||||||||||| |||||||    
T  28642449 ttacactgaattatgtaaatttttcaaattattaaccgtgtc 28642408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 179
Target Start/End: Complemental strand, 3911189 - 3911117
Alignment:
Q  107 gtcggtgtccgacatcgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattat 179  Q
    |||||||||||| | ||||||| ||||||||  |||| || ||||||||||||| ||||| | |||| |||||    
T  3911189 gtcggtgtccgataccgacaccaacacgacacttatgatttcactgaattatgtgattttattaaatgattat 3911117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 178
Target Start/End: Original strand, 6211456 - 6211488
Alignment:
Q  146 tacactgaattatgtcattttttcaaattatta 178  Q
    |||| ||||||||||||||||||||||||||||    
T  6211456 tacattgaattatgtcattttttcaaattatta 6211488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 105
Target Start/End: Original strand, 24413497 - 24413537
Alignment:
Q  65 agctatgaagtacggacactcctcggattagatgtgtcccg 105  Q
    |||||||||| ||||||||| ||||||||||| ||||||||    
T  24413497 agctatgaagcacggacacttctcggattagacgtgtcccg 24413537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 8e-17; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 122 - 186
Target Start/End: Original strand, 42004942 - 42005006
Alignment:
Q  122 cgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtc 186  Q
    |||||||||||| ||| ||||| ||||||| |||||||||||||| |||||||||||||||||||    
T  42004942 cgacaccgacacaacacctatgattacactaaattatgtcattttctcaaattattatccgtgtc 42005006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 125 - 186
Target Start/End: Complemental strand, 21145528 - 21145466
Alignment:
Q  125 caccgacacgacatctatgtttacactgaattatgtcatt-ttttcaaattattatccgtgtc 186  Q
    ||||||||||||  ||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  21145528 caccgacacgacgcctatgattacactgaattatgtcatttttttcaaattattatccgtgtc 21145466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 129 - 185
Target Start/End: Original strand, 22794080 - 22794136
Alignment:
Q  129 gacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgt 185  Q
    ||||||||| ||||  |||||||| ||||||||||||||||||||||||||||||||    
T  22794080 gacacgacacctataattacactgtattatgtcattttttcaaattattatccgtgt 22794136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 122 - 185
Target Start/End: Original strand, 6936395 - 6936458
Alignment:
Q  122 cgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgt 185  Q
    |||||| ||||||||| ||||| ||||||| |||||||||||||| ||| ||||||||||||||    
T  6936395 cgacacagacacgacacctatgattacacttaattatgtcattttctcagattattatccgtgt 6936458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 122 - 187
Target Start/End: Original strand, 40747768 - 40747833
Alignment:
Q  122 cgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtcg 187  Q
    ||||||| ||| |||| ||||  ||||| |||||||||||||||| ||||||||||||||||||||    
T  40747768 cgacaccaacatgacacctataattacattgaattatgtcattttctcaaattattatccgtgtcg 40747833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 130 - 187
Target Start/End: Original strand, 48415728 - 48415786
Alignment:
Q  130 acacgacatctatgtttacactgaattatgtca-ttttttcaaattattatccgtgtcg 187  Q
    |||||||||||||| ||||||| |||||| ||| |||||| ||||||||||||||||||    
T  48415728 acacgacatctatgattacactaaattatatcatttttttaaaattattatccgtgtcg 48415786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 67 - 127
Target Start/End: Original strand, 22881567 - 22881627
Alignment:
Q  67 ctatgaagtacggacactcctcggattagatgtgtccc-gtgtcggtgtccgacatcgacac 127  Q
    |||||||| ||||||||||||||||||||| ||||||| ||||| |||||||||| ||||||    
T  22881567 ctatgaagcacggacactcctcggattagacgtgtcccggtgtc-gtgtccgacaccgacac 22881627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 216
Target Start/End: Original strand, 11634127 - 11634215
Alignment:
Q  130 acacgacatctatgtttacactgaattatgtcattttttcaaattattatcc-gtgtc-gtgtccggtatccgtgtttgtgtctgtgct 216  Q
    |||||||| ||||| ||||| | ||||||||  |||| |||||||||||||| ||||| ||||||||| |||||||  |||||||||||    
T  11634127 acacgacacctatgattacattaaattatgttgttttctcaaattattatccggtgtcggtgtccggtgtccgtgtcggtgtctgtgct 11634215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 185
Target Start/End: Complemental strand, 42325601 - 42325561
Alignment:
Q  145 ttacactgaattatgtcattttttcaaattattatccgtgt 185  Q
    |||||||||||||||||||||| ||||||||||||| ||||    
T  42325601 ttacactgaattatgtcattttctcaaattattatcggtgt 42325561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 109
Target Start/End: Original strand, 48450548 - 48450592
Alignment:
Q  65 agctatgaagtacggacactcctcggattagatgtgtcccgtgtc 109  Q
    |||||||||| ||||||||||||||||||||| |||||| |||||    
T  48450548 agctatgaagcacggacactcctcggattagacgtgtcctgtgtc 48450592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 187
Target Start/End: Complemental strand, 113340 - 113298
Alignment:
Q  145 ttacactgaattatgtcattttttcaaattattatccgtgtcg 187  Q
    |||||||||||||||| ||||||||||||||||| | ||||||    
T  113340 ttacactgaattatgtgattttttcaaattattagctgtgtcg 113298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 187
Target Start/End: Original strand, 398783 - 398825
Alignment:
Q  145 ttacactgaattatgtcattttttcaaattattatccgtgtcg 187  Q
    |||||||||||||||| ||||||||||||||||| | ||||||    
T  398783 ttacactgaattatgtgattttttcaaattattagcggtgtcg 398825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 105
Target Start/End: Complemental strand, 9828174 - 9828136
Alignment:
Q  67 ctatgaagtacggacactcctcggattagatgtgtcccg 105  Q
    |||||||| ||||||||||||||||||||| ||||||||    
T  9828174 ctatgaagcacggacactcctcggattagacgtgtcccg 9828136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 187
Target Start/End: Complemental strand, 17754352 - 17754310
Alignment:
Q  145 ttacactgaattatgtcattttttcaaattattatccgtgtcg 187  Q
    |||||||||||||||| ||||||||||||||||| | ||||||    
T  17754352 ttacactgaattatgtaattttttcaaattattagcggtgtcg 17754310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 178
Target Start/End: Original strand, 30847733 - 30847771
Alignment:
Q  140 tatgtttacactgaattatgtcattttttcaaattatta 178  Q
    |||| ||||| ||||||||||||||||||||||||||||    
T  30847733 tatgattacattgaattatgtcattttttcaaattatta 30847771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 178
Target Start/End: Original strand, 1486727 - 1486760
Alignment:
Q  145 ttacactgaattatgtcattttttcaaattatta 178  Q
    |||||||||||||||| |||||||||||||||||    
T  1486727 ttacactgaattatgtgattttttcaaattatta 1486760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 178
Target Start/End: Original strand, 6612189 - 6612222
Alignment:
Q  145 ttacactgaattatgtcattttttcaaattatta 178  Q
    |||||||||||||||| |||||||||||||||||    
T  6612189 ttacactgaattatgtaattttttcaaattatta 6612222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 178
Target Start/End: Original strand, 18190126 - 18190159
Alignment:
Q  145 ttacactgaattatgtcattttttcaaattatta 178  Q
    |||||||||||||||| |||||||||||||||||    
T  18190126 ttacactgaattatgtaattttttcaaattatta 18190159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 178
Target Start/End: Original strand, 24577204 - 24577237
Alignment:
Q  145 ttacactgaattatgtcattttttcaaattatta 178  Q
    |||||||||||||||| |||||||||||||||||    
T  24577204 ttacactgaattatgtgattttttcaaattatta 24577237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 178
Target Start/End: Original strand, 40258951 - 40258984
Alignment:
Q  145 ttacactgaattatgtcattttttcaaattatta 178  Q
    |||||||||||||||| |||||||||||||||||    
T  40258951 ttacactgaattatgtgattttttcaaattatta 40258984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 103
Target Start/End: Original strand, 7918154 - 7918190
Alignment:
Q  67 ctatgaagtacggacactcctcggattagatgtgtcc 103  Q
    |||||||| |||||||||||||||||||| |||||||    
T  7918154 ctatgaagcacggacactcctcggattaggtgtgtcc 7918190  T

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Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 181
Target Start/End: Complemental strand, 11571626 - 11571590
Alignment:
Q  145 ttacactgaattatgtcattttttcaaattattatcc 181  Q
    ||||| |||||||||||||||| ||||||||||||||    
T  11571626 ttacattgaattatgtcattttctcaaattattatcc 11571590  T

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Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 177
Target Start/End: Complemental strand, 18337370 - 18337338
Alignment:
Q  145 ttacactgaattatgtcattttttcaaattatt 177  Q
    |||||||||||||||| ||||||||||||||||    
T  18337370 ttacactgaattatgtgattttttcaaattatt 18337338  T

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Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 111
Target Start/End: Complemental strand, 34741965 - 34741921
Alignment:
Q  67 ctatgaagtacggacactcctcggattagatgtgtcccgtgtcgg 111  Q
    |||||||| |||||||||| |||||||||  ||||||||||||||    
T  34741965 ctatgaagcacggacactcttcggattaggcgtgtcccgtgtcgg 34741921  T

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Target: scaffold0199 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 127 - 187
Target Start/End: Complemental strand, 2008 - 1948
Alignment:
Q  127 ccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtcg 187  Q
    ||||||||||| ||||| ||||||| || |||||||||||  |||||||||||||||||||    
T  2008 ccgacacgacacctatgattacactaaaatatgtcattttcacaaattattatccgtgtcg 1948  T

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Target: scaffold0066 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 187
Target Start/End: Original strand, 33360 - 33423
Alignment:
Q  123 gacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtcg 187  Q
    |||||||||||||||| | |  |||||||||||||||| ||||||||||||||||| | ||||||    
T  33360 gacaccgacacgacat-tgtaattacactgaattatgttattttttcaaattattagctgtgtcg 33423  T

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Target: scaffold0007 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 187
Target Start/End: Original strand, 225253 - 225328
Alignment:
Q  111 gtgtccgacatcgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtcg 187  Q
    |||||||||| ||||||| ||||||||  |||  ||||| || ||||||||||||| ||||||||||||| ||||||    
T  225253 gtgtccgaca-cgacaccaacacgacacttataattacattgtattatgtcattttctcaaattattatctgtgtcg 225328  T

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Target: scaffold0154 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 105
Target Start/End: Complemental strand, 13544 - 13505
Alignment:
Q  66 gctatgaagtacggacactcctcggattagatgtgtcccg 105  Q
    |||||||||||||||||||||||||||||| ||| |||||    
T  13544 gctatgaagtacggacactcctcggattaggtgtatcccg 13505  T

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Target: scaffold1528 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1528
Description:

Target: scaffold1528; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 187
Target Start/End: Complemental strand, 1076 - 1034
Alignment:
Q  145 ttacactgaattatgtcattttttcaaattattatccgtgtcg 187  Q
    |||||||||||||||| ||||||||||||||||| | ||||||    
T  1076 ttacactgaattatgtaattttttcaaattattagcggtgtcg 1034  T

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Target: scaffold0223 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 187
Target Start/End: Complemental strand, 20213 - 20171
Alignment:
Q  145 ttacactgaattatgtcattttttcaaattattatccgtgtcg 187  Q
    |||||||||||||||| ||||||||||||||||| | ||||||    
T  20213 ttacactgaattatgtgattttttcaaattattagctgtgtcg 20171  T

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Target: scaffold0136 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 187
Target Start/End: Original strand, 3867 - 3909
Alignment:
Q  145 ttacactgaattatgtcattttttcaaattattatccgtgtcg 187  Q
    |||||||||||||||| ||||||| ||||||||| ||||||||    
T  3867 ttacactgaattatgtgatttttttaaattattaaccgtgtcg 3909  T

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Target: scaffold0103 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 187
Target Start/End: Complemental strand, 51852 - 51810
Alignment:
Q  145 ttacactgaattatgtcattttttcaaattattatccgtgtcg 187  Q
    |||||||||||||||| ||||||||||||||||| | ||||||    
T  51852 ttacactgaattatgtgattttttcaaattattagctgtgtcg 51810  T

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Target: scaffold0050 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 187
Target Start/End: Complemental strand, 70319 - 70277
Alignment:
Q  145 ttacactgaattatgtcattttttcaaattattatccgtgtcg 187  Q
    |||||||||||||||| ||||||||||||||||| | ||||||    
T  70319 ttacactgaattatgttattttttcaaattattaactgtgtcg 70277  T

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Target: scaffold0027 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 187
Target Start/End: Complemental strand, 46723 - 46681
Alignment:
Q  145 ttacactgaattatgtcattttttcaaattattatccgtgtcg 187  Q
    |||||||||||||||| ||||||||||||||||| | ||||||    
T  46723 ttacactgaattatgtgattttttcaaattattaactgtgtcg 46681  T

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Target: scaffold0652 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 105
Target Start/End: Original strand, 403 - 440
Alignment:
Q  68 tatgaagtacggacactcctcggattagatgtgtcccg 105  Q
    ||||||| |||||||||||||||||||| |||||||||    
T  403 tatgaagcacggacactcctcggattaggtgtgtcccg 440  T

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Target: scaffold0361 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 178
Target Start/End: Complemental strand, 14571 - 14538
Alignment:
Q  145 ttacactgaattatgtcattttttcaaattatta 178  Q
    |||||||||||||||| |||||||||||||||||    
T  14571 ttacactgaattatgtgattttttcaaattatta 14538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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