View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11472_low_5 (Length: 441)
Name: NF11472_low_5
Description: NF11472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11472_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 16 - 256
Target Start/End: Original strand, 34396630 - 34396870
Alignment:
| Q |
16 |
actataacgttaaattgtgtttcatattcttctttttgtttctctaattcatcttgtttctctaggttgcttannnnnnnnnnnnnncataatttggttt |
115 |
Q |
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| T |
34396630 |
actataacgttaaattgtgtttcatattcttctttttgtttctctaattcatcttgtttctctaggttgcttattttttacttttttcataatttggttt |
34396729 |
T |
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| Q |
116 |
tcagatctattactgctataatctttcttcttaatttcaatttcacaccattttcttttggtaagctcacacatttaatgtaatttattgtatatatggt |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34396730 |
tcagatctattactgctataatctttcttcttaatttcaatttcacaccatttccttttggtaagctcacacatttaatgtaatttattgtatatatggt |
34396829 |
T |
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| Q |
216 |
aaccctactatctgtattgtaactatagaaacaagtcaaca |
256 |
Q |
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| T |
34396830 |
aaccctactatctgtattgtaactatagaaacaagtcaaca |
34396870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 314 - 421
Target Start/End: Original strand, 34396928 - 34397035
Alignment:
| Q |
314 |
ctgctaattgtactgtattgagggtgttatttatcaattgttgtctctttgattagagcatatactgttttatatatttaaggtgtttcatttatagtaa |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34396928 |
ctgctaattgtactgtattgagggtgttatttatcaattgttgtctctttgattagagcatatactgttttatatatttaaggtgtttcatttatagtaa |
34397027 |
T |
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| Q |
414 |
tgcatgtg |
421 |
Q |
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| T |
34397028 |
tgcatgtg |
34397035 |
T |
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