View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11472_low_6 (Length: 420)
Name: NF11472_low_6
Description: NF11472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11472_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 1 - 412
Target Start/End: Original strand, 46913385 - 46913796
Alignment:
| Q |
1 |
tatttctacgacaccacggagcttccaccacctgacttttcttccgtcttcgcctcccaacggttcttcttctcctccccaggcagctccaattccatca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46913385 |
tatttctacgacaccacggagcttccaccacctgacttttcttccgtcttcgcctcccaacggttcttcttctcctccccaggcagctccaattccatca |
46913484 |
T |
|
| Q |
101 |
cagagtctccctccaacgacactctaccctgtaataactcgttgataccaagaggaggtagtgtgaagagggtgccaaaatattctgtaaacccttacgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46913485 |
cagagtctccctccaacgacactctaccctgtaataactcgttgataccaagaggaggtagtgtgaagagggtgccaaaatattctgtaaacccttacgt |
46913584 |
T |
|
| Q |
201 |
tgatttcctccgttctatgcaggaaatgattcaatctcaacaacaagtggttgatgttactaatgattgggattatcttcatgaacttctcttatgctat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
46913585 |
tgatttcctccgttctatgcaggaaatgattcaatctcaacaacaagtggtggatgttactaacgattgggattatcttcatgaacttctcttatgctat |
46913684 |
T |
|
| Q |
301 |
cttgctcttaatcctacacatactcacaagtatattgttcaagctttcactcaccttcttgttgatattttatcttcctcctcctctttatcattctcct |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46913685 |
cttgctcttaatcctacacatactcacaagtatattgttcaagctttcactcaccttcttgttgatattttatcttcctcctcctctttatcattctcct |
46913784 |
T |
|
| Q |
401 |
cctcttcatctc |
412 |
Q |
| |
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|||||||||||| |
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| T |
46913785 |
cctcttcatctc |
46913796 |
T |
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