View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11473_high_1 (Length: 676)
Name: NF11473_high_1
Description: NF11473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11473_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 153; Significance: 1e-80; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 19 - 237
Target Start/End: Complemental strand, 3559700 - 3559476
Alignment:
| Q |
19 |
acaatcaccttgtgcagcttcttcatgcaagaagcatgttccatttattaaaccggtaaacaatgcatgaatattttatttccattgttaattagatgat |
118 |
Q |
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| T |
3559700 |
acaatcaccttgtgcagcttcttcatgcaagaagcatgttccatttattaaaccggtaaacaatgcatgaatattttatttccattgttaattagatgat |
3559601 |
T |
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| Q |
119 |
----------tggttaataagtttcaataaaagacaaaccgtttgatagaatctatatttaaatcttgattaaaattatcgttcattagactttacttaa |
208 |
Q |
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| T |
3559600 |
tgtattcaagtggttaataaatttcaataaaagacaatccgtttgatagaatctacatttaaatcttgattaaaataatctttcattagactttac---- |
3559505 |
T |
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| Q |
209 |
ttagtactattgttttgattttaaacatt |
237 |
Q |
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| T |
3559504 |
ttagaactattgttttgattttaaacatt |
3559476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 315 - 484
Target Start/End: Complemental strand, 3559406 - 3559233
Alignment:
| Q |
315 |
tgcatgtttgacaagtgctcgctcaaatacgcacaaatgaaatacat----ggtcccaaaaataaaaaccaaaacataacacagcaacctcatcacgttg |
410 |
Q |
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| T |
3559406 |
tgcatgtttgacaagtgcttgctcaaatacacacaaatgcaatacatacatggtcccaaaaataaaaaccaaaacataacacagcaacctcatcacgttg |
3559307 |
T |
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| Q |
411 |
tttacatagcttcatttataacttgaaatttgaacatatcttggaatttaaacagtttaaaagtgaaataagaa |
484 |
Q |
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| T |
3559306 |
tttacatagcttcatttataacttgaaatttgaacatatcttggaatttaaacagtttaaaagagaaataagaa |
3559233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 520 - 645
Target Start/End: Complemental strand, 3559153 - 3559024
Alignment:
| Q |
520 |
tttacaaaatggcaattgatgcatggggcgtat----cttaggcatgacatttgtgtttgaactaacaatgatggaatctttgggaattgaaagtagtag |
615 |
Q |
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| T |
3559153 |
tttacaaaatggcaattgatgcatggggcgtatatatcttaggcatgacatttgtgtttgaactaacaatgatggaatctttgggaattgaaagtagtag |
3559054 |
T |
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| Q |
616 |
gtggatcacttatctgtaccctctcccttc |
645 |
Q |
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| T |
3559053 |
gtggatcacttatctgtaccctctcccttc |
3559024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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