View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11473_high_24 (Length: 320)
Name: NF11473_high_24
Description: NF11473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11473_high_24 |
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| [»] chr4 (6 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 87; Significance: 1e-41; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 226 - 320
Target Start/End: Original strand, 46304211 - 46304305
Alignment:
| Q |
226 |
attaacactcgaacaagagcttgcattttaatcgaataggaaagcagaaagaattgtatctgcgttacccatttgcatttgtgagattcgactgc |
320 |
Q |
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| T |
46304211 |
attaacactcaaacaagagcttgcattttaatcgaataggaaagcagaaagaattgtatctgagttacccatttgcatttgtgagattcgactgc |
46304305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 47 - 184
Target Start/End: Original strand, 46307040 - 46307180
Alignment:
| Q |
47 |
aaaacttactttctccttttgtcttcttagcaagaaacggtttga---tcgtcatacaatgcttcttagcaacttcgttattgttgttttttgagggatg |
143 |
Q |
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| T |
46307040 |
aaaacttacttcctccttttttctgcttagcaagcaacaatttgacaatcttcaaacgaggcttcttagcaacttcatttttgttgttttttgagggatg |
46307139 |
T |
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| Q |
144 |
ctttgtagcaaattctattgaatgttctaatcaaataagaa |
184 |
Q |
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| T |
46307140 |
catcgtagcaaattctgttgaatgttctgatcaaattagaa |
46307180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 32 - 138
Target Start/End: Complemental strand, 46028379 - 46028273
Alignment:
| Q |
32 |
attacatcattgagtaaaacttactttctccttttgtcttcttagcaagaaacggtttgatcgtcatacaatgcttcttagcaacttcgttattgttgtt |
131 |
Q |
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| T |
46028379 |
attacagcattgagtaaaacttactttctcctttttcctgcttagcaagagacgatttgaacttcaaataaggcttctcagcaacttcatttttgctgtt |
46028280 |
T |
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| Q |
132 |
ttttgag |
138 |
Q |
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| T |
46028279 |
ttttgag |
46028273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 46428236 - 46428187
Alignment:
| Q |
17 |
acatattaataaaacattacatcattgagtaaaacttactttctcctttt |
66 |
Q |
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| T |
46428236 |
acatatcaatataccattacagcattgagtaaaacttactttctcctttt |
46428187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 46015874 - 46015802
Alignment:
| Q |
17 |
acatattaataaaacattacatcattgagtaaaacttactttctccttttgtcttcttagcaagaaacggttt |
89 |
Q |
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| T |
46015874 |
acatatcaatacatcattacagcattgagtaaaacttacttgctctttttttattattagcaagaaactgttt |
46015802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 46027919 - 46027873
Alignment:
| Q |
17 |
acatattaataaaacattacatcattgagtaaaacttactttctcct |
63 |
Q |
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| T |
46027919 |
acatatcaatacaccattacagcattgagtaaaacttactttctcct |
46027873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 29 - 169
Target Start/End: Original strand, 3803613 - 3803753
Alignment:
| Q |
29 |
aacattacatcattgagtaaaacttactttctccttttgtcttcttagcaagaaacggtttgatcgtcatacaatgcttcttagcaacttcgttattgtt |
128 |
Q |
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| T |
3803613 |
aacattacggcattgagtaaaacttactttctccttttttcatcttagcaattgatgattttaacgtcaaatgaggctccttagcaacttcatttttgtt |
3803712 |
T |
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| Q |
129 |
gttttttgagggatgctttgtagcaaattctattgaatgtt |
169 |
Q |
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| T |
3803713 |
gttttttgagcgacacttcatagcaaattctgtttaatgtt |
3803753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 32 - 79
Target Start/End: Original strand, 3802349 - 3802396
Alignment:
| Q |
32 |
attacatcattgagtaaaacttactttctccttttgtcttcttagcaa |
79 |
Q |
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| T |
3802349 |
attacagcattgagtaaaacttactttctccttttctcttcttagcaa |
3802396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 89
Target Start/End: Original strand, 4525410 - 4525470
Alignment:
| Q |
29 |
aacattacatcattgagtaaaacttactttctccttttgtcttcttagcaagaaacggttt |
89 |
Q |
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| T |
4525410 |
aacattaaagcattgagtaaaacttactttgtactttttgcttcttaggaagaaacggttt |
4525470 |
T |
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