View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11473_high_29 (Length: 284)
Name: NF11473_high_29
Description: NF11473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11473_high_29 |
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Alignment Details
Target: chr7 (Bit Score: 164; Significance: 1e-87; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 20 - 214
Target Start/End: Complemental strand, 36156388 - 36156193
Alignment:
| Q |
20 |
gtcttatatgataaaaacattccattttatagaaagtttatattttgaaaatattcatggtgacaaattcaacaatatcttatagctactatttgtcttc |
119 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36156388 |
gtcttatatgataaaaacattccattttatacaaagtttatattttgaaaatattcatggtgacaaattcaacaatatcttatagctactatttgtcttc |
36156289 |
T |
|
| Q |
120 |
aactatatatataagaaaataacatacataaattatcaaactaacccaa-tttaattaactgacacataagtaaaataaaaaataattgagttaga |
214 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| || || ||||||||||||||||| ||||||||||||| |
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| T |
36156288 |
aactatatatttaagaaaataacatacataaattatcaaactaacccaattttaattatctaactcataagtaaaataaaaattaattgagttaga |
36156193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 191 - 276
Target Start/End: Complemental strand, 36156030 - 36155945
Alignment:
| Q |
191 |
aaaataaaaaataattgagttagagttaaatttcctatttatattccactaaacatgcaaaatcttatctctattgaattcttctc |
276 |
Q |
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|||||||||| ||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||| ||||| |
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| T |
36156030 |
aaaataaaaattaattgagttagagttaaatttcctatttttattctactaaacaagcaaaatcttatctctattgaatttttctc |
36155945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 148 - 195
Target Start/End: Complemental strand, 36429636 - 36429589
Alignment:
| Q |
148 |
taaattatcaaactaacccaatttaattaactgacacataagtaaaat |
195 |
Q |
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|||| |||||||||||||||||||||| |||||| ||||||| ||||| |
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| T |
36429636 |
taaactatcaaactaacccaatttaatcaactgatacataagcaaaat |
36429589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 188
Target Start/End: Original strand, 5100816 - 5100883
Alignment:
| Q |
124 |
atatatataagaaaataacatac---ataaattatcaaactaacccaatttaattaactgacacataa |
188 |
Q |
| |
|
|||||| || ||||||||||||| ||||||||||||| ||| | ||||||||||||||||||||| |
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| T |
5100816 |
atatatttaggaaaataacataccccataaattatcaaattaatcatatttaattaactgacacataa |
5100883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 123 - 195
Target Start/End: Complemental strand, 19997214 - 19997140
Alignment:
| Q |
123 |
tatatatataagaaaataacataca---taaattatcaaactaacccaatttaattaactgacacataagtaaaat |
195 |
Q |
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||||||||||||||||||| ||| | |||||||||||| ||||| |||||||||||||||| |||||| ||||| |
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| T |
19997214 |
tatatatataagaaaataa-atagaagataaattatcaaattaaccaaatttaattaactgacgcataagcaaaat |
19997140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 118 - 195
Target Start/End: Original strand, 8901547 - 8901625
Alignment:
| Q |
118 |
tcaactatatatataagaaaataacat---acataaattatcaaactaacccaatttaattaactgacacataagtaaaat |
195 |
Q |
| |
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|||| ||||||| |||||||||||||| ||||||||||||||||||| |||||||||| ||||||||||| ||||| |
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| T |
8901547 |
tcaattatatatttaagaaaataacatgcaacataaattatcaaactaa--aaatttaattagttgacacataagcaaaat |
8901625 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 179
Target Start/End: Original strand, 8915393 - 8915454
Alignment:
| Q |
118 |
tcaactatatatataagaaaataacatacataaattatcaaactaacccaatttaattaact |
179 |
Q |
| |
|
|||| ||||||| ||| |||||||||||||| |||||| ||||| || ||| |||||||||| |
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|
| T |
8915393 |
tcaattatatatttaataaaataacatacatgaattatgaaacttactcaaattaattaact |
8915454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 103
Target Start/End: Original strand, 19533922 - 19533979
Alignment:
| Q |
46 |
ttatagaaagtttatattttgaaaatattcatggtgacaaattcaacaatatcttata |
103 |
Q |
| |
|
||||| ||| || ||||||| ||||||||||| | ||||||| ||||||||||||||| |
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| T |
19533922 |
ttataaaaatttgatattttaaaaatattcatcgagacaaatccaacaatatcttata |
19533979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 103
Target Start/End: Original strand, 20875359 - 20875403
Alignment:
| Q |
59 |
atattttgaaaatattcatggtgacaaattcaacaatatcttata |
103 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||| |||||||| |
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|
| T |
20875359 |
atattttgaaaatattcatggagacaaatcaaacaacatcttata |
20875403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 103
Target Start/End: Original strand, 30119001 - 30119050
Alignment:
| Q |
54 |
agtttatattttgaaaatattcatggtgacaaattcaacaatatcttata |
103 |
Q |
| |
|
|||| |||||| ||||||||| || | ||||||||||||||||||||||| |
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| T |
30119001 |
agttaatatttagaaaatatttatcgagacaaattcaacaatatcttata |
30119050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 103
Target Start/End: Complemental strand, 10536920 - 10536876
Alignment:
| Q |
59 |
atattttgaaaatattcatggtgacaaattcaacaatatcttata |
103 |
Q |
| |
|
||||||||||||||||||| | ||| ||| ||||||||||||||| |
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|
| T |
10536920 |
atattttgaaaatattcatcgagacgaatccaacaatatcttata |
10536876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 103
Target Start/End: Original strand, 22328074 - 22328118
Alignment:
| Q |
59 |
atattttgaaaatattcatggtgacaaattcaacaatatcttata |
103 |
Q |
| |
|
||||||||||||||||||| | ||| |||||||||| |||||||| |
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|
| T |
22328074 |
atattttgaaaatattcatcgagacgaattcaacaacatcttata |
22328118 |
T |
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