View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11473_high_3 (Length: 579)
Name: NF11473_high_3
Description: NF11473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11473_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 16 - 569
Target Start/End: Complemental strand, 41302490 - 41301924
Alignment:
| Q |
16 |
aagaagcaacgagtagttgaacaagattagcacaaaataacctttggaaccaactaaccaggttggtgagatctgtacgttaaagattgcagcaaagt-- |
113 |
Q |
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| T |
41302490 |
aagaagcaacgattagttgaacaagattagcacaaaataacctttggaaccaactaaccaggttggtgagatctgtacgttaaagattgcagcaaagtgg |
41302391 |
T |
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| Q |
114 |
----------------taacactttcattccatacataaagtatgtcgttgtcaactttgnnnnnnnnnnnnnnnnnnnnnnnngtaaatcgttgtggtg |
197 |
Q |
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| T |
41302390 |
cttcaccaatcaccactaacactttcattccatacataaagtgtgtcgttgtcaactttgcaaaaacaaaacaaacaaagaaaagtaaatcgttgtggtg |
41302291 |
T |
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| Q |
198 |
aatgttgtaacaatctcaatctttgacatttgtaaacaattgcaagctaatggatataaccaatttacaatatttcatcttcattcacttttgctttata |
297 |
Q |
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| T |
41302290 |
aatgttgtaacaatctcaatctttgacatttgtaaacaattgcaagctaatggatataaccaatttacaatatttcatcttcattcacttttgctttata |
41302191 |
T |
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| Q |
298 |
aacttgctagctgctacatcaaattatatttacaaaacctctnnnnnnntatgtaagtggcaaagattactatttacacaatatatatacatccatctag |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41302190 |
aacttgctagctgctacatcaaattatatttacaaaacctctaaaaaaatatgtaagtggcaaagattactatttacacaatatatatacatccatctag |
41302091 |
T |
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| Q |
398 |
-ttaaatctaggaactatatagtaactgtgtnnnnnnnnnnnnnncaaggacacatgtacatacaaaaggaacaatgccaccaaccatatatgaatcact |
496 |
Q |
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| T |
41302090 |
tttaaatctaggaactatatagtaactgtgt------tatatatacaaggacacatgtacatacaaaaggaacaatgccaccaaccatatatgaatcact |
41301997 |
T |
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| Q |
497 |
cccaacccatcaactttttccagactcctttctcaatcttgttccttggaaaagataagccctccccttcatc |
569 |
Q |
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| T |
41301996 |
cccaacccatcaactttttccagactcctttctcaatcttgttccttggaaaagataagccctccccttcatc |
41301924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 496 - 566
Target Start/End: Original strand, 27661785 - 27661855
Alignment:
| Q |
496 |
tcccaacccatcaactttttccagactcctttctcaatcttgttccttggaaaagataagccctccccttc |
566 |
Q |
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| T |
27661785 |
tcccaacccatcagcatcttccaaactccctcctcaatcttgttccttggaacagacatcccctccccttc |
27661855 |
T |
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