View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11473_high_31 (Length: 273)

Name: NF11473_high_31
Description: NF11473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11473_high_31
NF11473_high_31
[»] chr7 (13 HSPs)
chr7 (25-261)||(43178574-43178810)
chr7 (38-228)||(24441666-24441861)
chr7 (25-191)||(39038308-39038475)
chr7 (116-232)||(8113505-8113621)
chr7 (38-125)||(8113640-8113729)
chr7 (152-207)||(6195649-6195704)
chr7 (163-207)||(6189133-6189177)
chr7 (163-207)||(8069903-8069947)
chr7 (163-207)||(19311672-19311716)
chr7 (163-207)||(48238779-48238823)
chr7 (163-207)||(48637023-48637067)
chr7 (25-99)||(23305496-23305570)
chr7 (26-102)||(14573995-14574071)
[»] chr8 (12 HSPs)
chr8 (26-232)||(11648113-11648321)
chr8 (87-268)||(602095-602280)
chr8 (25-224)||(960693-960894)
chr8 (38-139)||(35824167-35824272)
chr8 (25-111)||(9381942-9382028)
chr8 (39-112)||(32073462-32073535)
chr8 (25-100)||(24683157-24683232)
chr8 (163-207)||(11994444-11994488)
chr8 (163-205)||(6927289-6927331)
chr8 (163-205)||(28509581-28509623)
chr8 (163-205)||(28516788-28516830)
chr8 (182-261)||(9381812-9381889)
[»] chr5 (7 HSPs)
chr5 (25-269)||(43170985-43171233)
chr5 (25-232)||(5120530-5120742)
chr5 (25-224)||(26402144-26402340)
chr5 (163-207)||(7850635-7850679)
chr5 (163-207)||(14651470-14651514)
chr5 (163-205)||(38491367-38491409)
chr5 (24-71)||(23318168-23318214)
[»] chr4 (8 HSPs)
chr4 (26-232)||(10142410-10142620)
chr4 (25-224)||(13957514-13957717)
chr4 (25-261)||(51758741-51758983)
chr4 (25-232)||(42511342-42511550)
chr4 (24-208)||(25201574-25201761)
chr4 (163-207)||(51337972-51338016)
chr4 (163-207)||(28143177-28143221)
chr4 (25-100)||(20152043-20152118)
[»] chr3 (5 HSPs)
chr3 (25-232)||(47185242-47185453)
chr3 (162-261)||(44879852-44879951)
chr3 (55-107)||(44879476-44879528)
chr3 (163-213)||(23044620-23044670)
chr3 (163-207)||(31884686-31884730)
[»] chr1 (10 HSPs)
chr1 (38-232)||(12028036-12028233)
chr1 (25-224)||(47397134-47397342)
chr1 (81-232)||(48646244-48646399)
chr1 (25-188)||(5208437-5208604)
chr1 (60-112)||(12783623-12783675)
chr1 (176-232)||(12783561-12783617)
chr1 (163-207)||(28945541-28945585)
chr1 (163-207)||(36297023-36297067)
chr1 (163-207)||(42722558-42722602)
chr1 (25-72)||(12783769-12783815)
[»] chr2 (12 HSPs)
chr2 (29-220)||(25621719-25621914)
chr2 (25-213)||(43672658-43672851)
chr2 (25-112)||(38422389-38422476)
chr2 (152-232)||(6883630-6883709)
chr2 (25-224)||(14904301-14904504)
chr2 (163-213)||(6271330-6271380)
chr2 (163-207)||(90061-90105)
chr2 (163-207)||(29303497-29303541)
chr2 (163-205)||(19678357-19678399)
chr2 (163-205)||(45277234-45277276)
chr2 (25-74)||(6883552-6883601)
chr2 (163-205)||(7880091-7880133)
[»] chr6 (7 HSPs)
chr6 (25-203)||(1830958-1831137)
chr6 (25-261)||(11680444-11680684)
chr6 (152-269)||(1831162-1831279)
chr6 (199-269)||(15603741-15603811)
chr6 (25-207)||(14677914-14678101)
chr6 (163-205)||(33516358-33516400)
chr6 (25-94)||(4065081-4065150)
[»] scaffold0385 (1 HSPs)
scaffold0385 (78-261)||(909-1100)
[»] scaffold0178 (1 HSPs)
scaffold0178 (25-74)||(1019-1068)
[»] scaffold0743 (1 HSPs)
scaffold0743 (163-207)||(2538-2582)


Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 25 - 261
Target Start/End: Complemental strand, 43178810 - 43178574
Alignment:
Q  25 atataaaaagagaaatgatgtacttctagcatacaaaggagttcttgtatttgtgattcctctaaaaagtctaacactaattttgtatatgtattattgt 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43178810 atataaaaagagaaatgatgtacttctagcatacaaaggagttcttgtatttgtgattcctctaaaaagtctaacactaattttgtatatgtattattgt 43178711  T
Q  125 tatgagtttaacattttagannnnnnnatccaaaaatttaaaatttaattaattacgtgttgatatacttgtacttttttggtgttattgttcttaggtg 224  Q
    |||||||||||||||  |||       |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43178710 tatgagtttaacattggagatttttttatccaaaagtttaaaatttaattaattacgtgttgatatacttgtacttttttggtgttattgttcttaggtg 43178611  T
Q  225 ttaaaattgtaatttccttcgtaggtgctattgttct 261  Q
    ||||||||||| ||| |||| ||||||||||||||||    
T  43178610 ttaaaattgtagtttacttcataggtgctattgttct 43178574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 38 - 228
Target Start/End: Complemental strand, 24441861 - 24441666
Alignment:
Q  38 aatgatgtacttctagcatacaaaggagttcttgtatttgtgattcctctaaaaagtctaacactaattttgtat-atgtattattgttat---gagttt 133  Q
    |||||| ||||||||| |||||||||||||||||| | | ||||||||||||||||| ||||| ||||||||||| ||||||||||||| |   ||||||    
T  24441861 aatgatatacttctagtatacaaaggagttcttgtgtctatgattcctctaaaaagtttaacaataattttgtatcatgtattattgttgttttgagttt 24441762  T
Q  134 aa-cattttagannnnnnnatccaaaaatttaaaatttaattaattacgtgttgatatacttgtacttttttggtgttattgttcttaggtgttaa 228  Q
    || ||||  |||       |||||||| ||||||||||| |||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||    
T  24441761 aaacattgaagaattttgcatccaaaagtttaaaatttatttaattacgtgttgatatacttttacttttttgctgttattattcttaggtgttaa 24441666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 25 - 191
Target Start/End: Complemental strand, 39038475 - 39038308
Alignment:
Q  25 atataaaaagagaaatgatgtacttctagcatacaaaggagttcttgtatttgtgattcctctaaaaagtctaacactaattttgtat-atgtatta--- 120  Q
    |||||||||||| |||||||||||||||||||||||||||||| || ||| |  |||||||||||||||||||||||||||||||||| ||||||||       
T  39038475 atataaaaagaggaatgatgtacttctagcatacaaaggagtttttctatatacgattcctctaaaaagtctaacactaattttgtatcatgtattattg 39038376  T
Q  121 ttgttatgagtttaacattttagannnnnnnatccaaaaatttaaaatttaattaattacgtgttgatata 191  Q
    |||||||||||||||||||   |        |||||||| |||||||||||||||||||||||||||||||    
T  39038375 ttgttatgagtttaacatt---gggatttccatccaaaagtttaaaatttaattaattacgtgttgatata 39038308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 116 - 232
Target Start/End: Complemental strand, 8113621 - 8113505
Alignment:
Q  116 tattattgttatgagtttaacattttagannnnnnnatccaaaaatttaaaatttaattaattacgtgttgatatacttgtacttttttggtgttattgt 215  Q
    |||| |||||||||||||||||||  |||       |||||||| ||||||||||| |||||||  ||||||||||||| ||||||||| |||||||| |    
T  8113621 tattgttgttatgagtttaacattggagaattttgcatccaaaagtttaaaatttagttaattatatgttgatatacttttactttttttgtgttattat 8113522  T
Q  216 tcttaggtgttaaaatt 232  Q
    ||||||||| |||||||    
T  8113521 tcttaggtgctaaaatt 8113505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 38 - 125
Target Start/End: Complemental strand, 8113729 - 8113640
Alignment:
Q  38 aatgatgtacttctagcatacaaaggagttcttgtatttgtgattcctcta-aaaagtctaacactaattttgtat-atgtattattgtt 125  Q
    |||||||||||||||  ||||||||||  ||||||||   ||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  8113729 aatgatgtacttctactatacaaaggaactcttgtatcgatgattcctctaaaaaagtctaacactaattttgtatcatgtattattgtt 8113640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 152 - 207
Target Start/End: Complemental strand, 6195704 - 6195649
Alignment:
Q  152 atccaaaaatttaaaatttaattaattacgtgttgatatacttgtacttttttggt 207  Q
    |||||||  |||||||||||||||||||||||||||||||||| || |||||||||    
T  6195704 atccaaatgtttaaaatttaattaattacgtgttgatatacttttatttttttggt 6195649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 6189177 - 6189133
Alignment:
Q  163 taaaatttaattaattacgtgttgatatacttgtacttttttggt 207  Q
    |||||||||||||||||||||||||||||||| || |||||||||    
T  6189177 taaaatttaattaattacgtgttgatatacttttatttttttggt 6189133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 8069903 - 8069947
Alignment:
Q  163 taaaatttaattaattacgtgttgatatacttgtacttttttggt 207  Q
    |||||||||||||||||||||||||||||||| || |||||||||    
T  8069903 taaaatttaattaattacgtgttgatatacttttatttttttggt 8069947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 19311716 - 19311672
Alignment:
Q  163 taaaatttaattaattacgtgttgatatacttgtacttttttggt 207  Q
    |||||||||||||||||||||||||||||||| || |||||||||    
T  19311716 taaaatttaattaattacgtgttgatatacttttatttttttggt 19311672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 48238779 - 48238823
Alignment:
Q  163 taaaatttaattaattacgtgttgatatacttgtacttttttggt 207  Q
    |||||||||||||||||||||||||||||||| || |||||||||    
T  48238779 taaaatttaattaattacgtgttgatatacttttatttttttggt 48238823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 48637023 - 48637067
Alignment:
Q  163 taaaatttaattaattacgtgttgatatacttgtacttttttggt 207  Q
    |||||||||||||||||||||||||||||||| || |||||||||    
T  48637023 taaaatttaattaattacgtgttgatatacttttatttttttggt 48637067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 99
Target Start/End: Original strand, 23305496 - 23305570
Alignment:
Q  25 atataaaaagagaaatgatgtacttctagcatacaaaggagttcttgtatttgtgattcctctaaaaagtctaac 99  Q
    |||| ||||||| ||| || ||||||||||||||||| ||||||| |||| |  |||||||| ||||||||||||    
T  23305496 atattaaaagaggaataatctacttctagcatacaaatgagttctcgtatcttagattcctcaaaaaagtctaac 23305570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 102
Target Start/End: Original strand, 14573995 - 14574071
Alignment:
Q  26 tataaaaagagaaatgatgtacttctagcatacaaaggagttcttgtatttgtgattcctctaaaaagtctaacact 102  Q
    ||||||||||  |||||||||||| || | || |||||||||||||  | | |||||||||| ||||||||||||||    
T  14573995 tataaaaagaagaatgatgtacttgtaacgtataaaggagttcttgcctctttgattcctctgaaaagtctaacact 14574071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 108; Significance: 3e-54; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 26 - 232
Target Start/End: Complemental strand, 11648321 - 11648113
Alignment:
Q  26 tataaaaagagaaatgatgtacttctagcatacaaaggagttcttgtatttgtgattcctctaaaaagtctaacactaattttgtat-atg-tattattg 123  Q
    ||||||||||| ||||||||| |||||||||||||||||||| |||||| | ||||||||||||| |||| |||||||||||||||| ||| |||| |||    
T  11648321 tataaaaagaggaatgatgtatttctagcatacaaaggagttattgtatctatgattcctctaaagagtcaaacactaattttgtatcatgttattgttg 11648222  T
Q  124 ttatgagtttaacattttagannnnnnnatccaaaaatttaaaatttaattaattacgtgttgatatacttgtacttttttggtgttattgttcttaggt 223  Q
    ||||||||||||||||  ||        |||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||||    
T  11648221 ttatgagtttaacattggagtatttttcatccaaaagtttaaaatttaattaattatgtgttgatatacttttacttttttggtgttattattcttaggt 11648122  T
Q  224 gttaaaatt 232  Q
    | |||||||    
T  11648121 gctaaaatt 11648113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 87 - 268
Target Start/End: Complemental strand, 602280 - 602095
Alignment:
Q  87 taaaaagtctaacactaattttgtat-atgtattattgtt---atgagtttaacattttagannnnnnnatccaaaaatttaaaatttaattaattacgt 182  Q
    |||||||||||||||||||||||| | |||||||||||||   |||||||||||||||||||       |||||||| ||||||||||||||||||||||    
T  602280 taaaaagtctaacactaattttgtgtcatgtattattgttgttatgagtttaacattttagaattttccatccaaaagtttaaaatttaattaattacgt 602181  T
Q  183 gttgatatacttgtacttttttggtgttattgttcttaggtgttaaaattgtaatttccttcgtaggtgctattgttctctgcttc 268  Q
    |||||||||||| |||||||||||||||||| ||||||| || |||||||  |  || ||| |||| |||||||||||||| ||||    
T  602180 gttgatatacttttacttttttggtgttattattcttagttgctaaaatttaagcttactttgtagatgctattgttctctacttc 602095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 25 - 224
Target Start/End: Complemental strand, 960894 - 960693
Alignment:
Q  25 atataaaaagagaaatgatgtacttctagcatacaaaggagttcttgtatttgtgattcctctaaaaag-tctaacactaattttgtat-atgtattatt 122  Q
    |||||||||||| ||||||  |||| ||||||||||| |||||||||||| | |||||||||||||||  ||||||| |||||||| |  ||||||| ||    
T  960894 atataaaaagaggaatgat--acttatagcatacaaatgagttcttgtatctatgattcctctaaaaaaatctaacattaattttgcaccatgtattctt 960797  T
Q  123 gtt---atgagtttaacattttagannnnnnnatccaaaaatttaaaatttaattaattacgtgttgatatacttgtacttttttggtgttattgttctt 219  Q
    |||   ||||||||||||||  |||       ||| |||| |||||| |||||||||||||||||||||||| || ||||||||| |||||||| |||||    
T  960796 gttgtgatgagtttaacattagagaattttgcatcaaaaagtttaaattttaattaattacgtgttgatatatttttactttttt-gtgttattattctt 960698  T
Q  220 aggtg 224  Q
    |||||    
T  960697 aggtg 960693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 38 - 139
Target Start/End: Original strand, 35824167 - 35824272
Alignment:
Q  38 aatgatgtacttctagcatacaaaggagttcttgtatttgtgattcctctaaaaagtctaacactaattttgtat-atgtatta---ttgttatgagttt 133  Q
    |||||||||||||| | |||||||||| ||||| ||| | ||||||||||||||||| ||||||||||||||||| ||||||||   |||||||||||||    
T  35824167 aatgatgtacttctggtatacaaaggatttcttttatctatgattcctctaaaaagtttaacactaattttgtatcatgtattattgttgttatgagttt 35824266  T
Q  134 aacatt 139  Q
    ||||||    
T  35824267 aacatt 35824272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 25 - 111
Target Start/End: Complemental strand, 9382028 - 9381942
Alignment:
Q  25 atataaaaagagaaatgatgtacttctagcatacaaaggagttcttgtatttgtgattcctctaaaaagtctaacactaattttgta 111  Q
    ||||||||| |  |||||||||||||||  ||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||    
T  9382028 atataaaaataagaatgatgtacttctaatatacaaaagagttcttgtatctatgattcctctaaaaagtctaacactaattttgta 9381942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 39 - 112
Target Start/End: Original strand, 32073462 - 32073535
Alignment:
Q  39 atgatgtacttctagcatacaaaggagttcttgtatttgtgattcctctaaaaagtctaacactaattttgtat 112  Q
    ||||||||||||||||||||||| ||||| |||||| | |||||||||||||||||||||| |||| |||||||    
T  32073462 atgatgtacttctagcatacaaatgagtttttgtatctatgattcctctaaaaagtctaactctaactttgtat 32073535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 25 - 100
Target Start/End: Original strand, 24683157 - 24683232
Alignment:
Q  25 atataaaaagagaaatgatgtacttctagcatacaaaggagttcttgtatttgtgattcctctaaaaagtctaaca 100  Q
    |||||||||||| |||||| ||||| ||||||||||| |||||||||||| |  |||| |||||||||||||||||    
T  24683157 atataaaaagaggaatgatttacttgtagcatacaaatgagttcttgtatcttagattactctaaaaagtctaaca 24683232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 11994488 - 11994444
Alignment:
Q  163 taaaatttaattaattacgtgttgatatacttgtacttttttggt 207  Q
    |||||||||||||||||||||||||||||||| || |||||||||    
T  11994488 taaaatttaattaattacgtgttgatatacttttatttttttggt 11994444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 205
Target Start/End: Complemental strand, 6927331 - 6927289
Alignment:
Q  163 taaaatttaattaattacgtgttgatatacttgtacttttttg 205  Q
    |||||||||||||||||||||||||||||||| || |||||||    
T  6927331 taaaatttaattaattacgtgttgatatacttttatttttttg 6927289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 205
Target Start/End: Original strand, 28509581 - 28509623
Alignment:
Q  163 taaaatttaattaattacgtgttgatatacttgtacttttttg 205  Q
    |||||||||||||||||||||||||||||||| || |||||||    
T  28509581 taaaatttaattaattacgtgttgatatacttttatttttttg 28509623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 205
Target Start/End: Original strand, 28516788 - 28516830
Alignment:
Q  163 taaaatttaattaattacgtgttgatatacttgtacttttttg 205  Q
    |||||||||||||||||||||||||||||||| || |||||||    
T  28516788 taaaatttaattaattacgtgttgatatacttttatttttttg 28516830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 261
Target Start/End: Complemental strand, 9381889 - 9381812
Alignment:
Q  182 tgttgatatacttgtacttttttggtgttattgttcttaggtgttaaaattgtaatttccttcgtaggtgctattgttct 261  Q
    ||||||||||||| ||||||||  |||||||| |||||||||| |||||||  | | | ||||| | |||||||||||||    
T  9381889 tgttgatatacttttacttttt--gtgttattattcttaggtgctaaaatttcagtctacttcgcatgtgctattgttct 9381812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 106; Significance: 4e-53; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 25 - 269
Target Start/End: Complemental strand, 43171233 - 43170985
Alignment:
Q  25 atataaaaagagaaatgatgtacttctagcatacaaaggagttcttgtatttgtgattcctctaaaaagtctaacactaattttgta-tatgtatta--- 120  Q
    ||||||||| || ||||||||||||||||  ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||       
T  43171233 atataaaaaaaggaatgatgtacttctagtgtacaaaggagttcttgtatttatgattcctctacaaagtctaacactaattttgtattatgtattattt 43171134  T
Q  121 ttgttatgagtttaacattttagannnnnnnatccaaaaatttaaaatttaattaattacgtgttgatatacttgtacttttttggtgttattgttctta 220  Q
    |||||| ||||||||||||  |||       |||||||| ||||||||||| |||||||||||||||||||||| || |||||| |||||||| ||||||    
T  43171133 ttgttacgagtttaacattggagaattttgcatccaaaagtttaaaatttagttaattacgtgttgatatacttttatttttttcgtgttattattctta 43171034  T
Q  221 ggtgttaaaattgtaatttccttcgtaggtgctattgttctctgcttct 269  Q
    |||| |||||||  | | | ||||| | ||||||||||||  |||||||    
T  43171033 ggtgctaaaattacagtctacttcgcatgtgctattgttccatgcttct 43170985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 25 - 232
Target Start/End: Complemental strand, 5120742 - 5120530
Alignment:
Q  25 atataaaaagagaaatgatgtacttctagcatacaaagga---gttcttgtatttgtgattcctctaaaaagtctaacactaattttgtat-atgtatta 120  Q
    |||||||||||| |||| ||||||||||||||||||| ||   |||||||||| | |||||||| |||||| ||||||||||||||||||| ||||||||    
T  5120742 atataaaaagaggaatggtgtacttctagcatacaaatgatcagttcttgtatctatgattcctttaaaaactctaacactaattttgtatcatgtatta 5120643  T
Q  121 ---ttgttatgagtttaacattttagannnnnnnatccaaaaatttaaaatttaattaattacgtgttgatatacttgtacttttttggtgttattgttc 217  Q
       ||||||| ||  |||||||  |||       |||||||| |||||||||||||||||||||| ||||||||||| || ||||||||||| ||| |||    
T  5120642 ttgttgttataag--taacattggagaatttttcatccaaaagtttaaaatttaattaattacgtattgatatacttttaattttttggtgtcattattc 5120545  T
Q  218 ttaggtgttaaaatt 232  Q
    ||| ||| |||||||    
T  5120544 ttaagtgctaaaatt 5120530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 25 - 224
Target Start/End: Original strand, 26402144 - 26402340
Alignment:
Q  25 atataaaaagagaaatgatgtacttctagcatacaaaggagttcttgtatttgtgattcctctaaaaagtctaacactaattttgtat-atgtattattg 123  Q
    |||||||||||  |||||| ||||||||| |||||||||||||||||||  | ||||| ||||||||||| |||||||||| |||||| ||||||||||     
T  26402144 atataaaaagaagaatgatatacttctagaatacaaaggagttcttgtacctatgatttctctaaaaagtgtaacactaatgttgtatcatgtattatta 26402243  T
Q  124 ttatgagtttaacattttagannnnnnnatccaaaaatttaaaatttaattaattacgtgttgatatacttgtacttttttggtgttattgttcttaggt 223  Q
     ||||||||||| |||  |||       |||||||| ||||||||||||||||    |||| ||||||||| |  ||||||||||||||| |||||||||    
T  26402244 gtatgagtttaaaattggagaattttccatccaaaagtttaaaatttaattaa----gtgtggatatacttttggttttttggtgttattattcttaggt 26402339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 7850635 - 7850679
Alignment:
Q  163 taaaatttaattaattacgtgttgatatacttgtacttttttggt 207  Q
    |||||||||||||||||||||||||||||||| || |||||||||    
T  7850635 taaaatttaattaattacgtgttgatatacttttatttttttggt 7850679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 14651514 - 14651470
Alignment:
Q  163 taaaatttaattaattacgtgttgatatacttgtacttttttggt 207  Q
    |||||||||||||||||||||||||||||||| || |||||||||    
T  14651514 taaaatttaattaattacgtgttgatatacttttatttttttggt 14651470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 205
Target Start/End: Original strand, 38491367 - 38491409
Alignment:
Q  163 taaaatttaattaattacgtgttgatatacttgtacttttttg 205  Q
    |||||||||||||||||||||||||||||||| || |||||||    
T  38491367 taaaatttaattaattacgtgttgatatacttttatttttttg 38491409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 71
Target Start/End: Complemental strand, 23318214 - 23318168
Alignment:
Q  24 tatataaaaagagaaatgatgtacttctagcatacaaaggagttcttg 71  Q
    ||||||||||||| ||||||||||||||| ||||| ||||||||||||    
T  23318214 tatataaaaagaggaatgatgtacttctaacatac-aaggagttcttg 23318168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 96; Significance: 4e-47; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 26 - 232
Target Start/End: Original strand, 10142410 - 10142620
Alignment:
Q  26 tataaaaagagaaatgatgtacttctagcatacaaaggagttcttgtatttgtgattcctctaaaaagtctaacactaattttgtat-atgtatta---t 121  Q
    ||||||||||| ||| |||||| ||||| |||||||||||||| ||||| | |||||||| |||||||||||||||||||||||||| ||||||||   |    
T  10142410 tataaaaagaggaatcatgtacatctagtatacaaaggagttcatgtatctatgattcctttaaaaagtctaacactaattttgtatcatgtattattgt 10142509  T
Q  122 tgttatgagtttaacattttagannnnnnnatccaaaaatttaaaatttaattaattacgtgttgatatacttgtacttttttggtgttattgttcttag 221  Q
    |||||| |||||||||||  |||       || ||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||| |||| ||    
T  10142510 tgttattagtttaacattggagaattttgcattcaaaagtttaaaatttagttaattacgtgttgatatacttttacttttttggtgttattattctcag 10142609  T
Q  222 gtgttaaaatt 232  Q
    ||| |||||||    
T  10142610 gtgctaaaatt 10142620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 25 - 224
Target Start/End: Original strand, 13957514 - 13957717
Alignment:
Q  25 atataaaaagagaaatgatgtacttctagcatacaaaggagttcttgtatttgtgattcctctaaaaagtctaacactaattttgtat-atgtatt---a 120  Q
    |||||||||||| |||||||||||||||| ||||||| || ||||||||| | |||||  |||||||| ||||||||||||||||||| |||||||   |    
T  13957514 atataaaaagaggaatgatgtacttctagtatacaaatgacttcttgtatctatgatttatctaaaaactctaacactaattttgtatcatgtattatca 13957613  T
Q  121 ttgttatgagtttaacattttagannnnnnnatccaaaaatttaaaatttaattaattacgtgttgatatacttgtacttttttggtgttattgttctta 220  Q
    |||||||||||||||||||  |||       |||||||| ||||||||||| |||||||||||||||||||||| |||| ||||||| ||||| ||||||    
T  13957614 ttgttatgagtttaacattgaagaattttgcatccaaaagtttaaaatttagttaattacgtgttgatatacttttactattttggtattattattctta 13957713  T
Q  221 ggtg 224  Q
    ||||    
T  13957714 ggtg 13957717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 25 - 261
Target Start/End: Original strand, 51758741 - 51758983
Alignment:
Q  25 atataaaaagagaaatgatgtacttctagcatacaaaggagttcttgtatttgtgattcctctaaaaagtctaacactaattttgtat-atgtatta--- 120  Q
    |||||||||| | ||||||||||||| |||| |||||||||||||||||| |  |||| ||||||||||||||||||||||||||||| ||||||||       
T  51758741 atataaaaagcggaatgatgtacttcaagcaaacaaaggagttcttgtatcttagattactctaaaaagtctaacactaattttgtatcatgtattattg 51758840  T
Q  121 ttgttatgag-tttaacattttagannnnnnnatccaaaaatttaaaatttaattaattacgtgttgatatacttgtacttttttggtgttattgttctt 219  Q
    |||||||||| |||||||||   ||       |||||||| |||||| ||||||||||||| |||||||||| || |||||||||| ||||||| || ||    
T  51758841 ttgttatgagttttaacattgccgacttttccatccaaaagtttaaattttaattaattacatgttgatatatttttacttttttgttgttattattttt 51758940  T
Q  220 -aggtgttaaaattgtaatttccttcgtaggtgctattgttct 261  Q
     ||||| ||||||| |||| | ||||| | |||||||||||||    
T  51758941 caggtgctaaaattttaatctacttcgcatgtgctattgttct 51758983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 25 - 232
Target Start/End: Complemental strand, 42511550 - 42511342
Alignment:
Q  25 atataaaaagagaaatgatgtacttctagcatacaaaggagttcttgtatttgtgattcctctaaaaagtctaacactaattttgtat-atgtatta--- 120  Q
    |||||||||||| |||||||||||||||| ||||||| |||||||||| | | |||||| |||||||||  ||||||||||||||||| ||||||||       
T  42511550 atataaaaagaggaatgatgtacttctagtatacaaaagagttcttgtgtctatgattcttctaaaaag--taacactaattttgtatcatgtattattg 42511453  T
Q  121 ttgttatgagtttaacattttagannnnnnnatccaaaaatttaaaatttaattaattacgtgttgatatacttgtacttttttggtgttattgttctta 220  Q
    |||||||||||||||||||  |||       ||| || | ||||||||||| ||||||||||| |||||||||| |||||||||||||||| | || |||    
T  42511452 ttgttatgagtttaacattggaga-atttgcatctaagagtttaaaatttagttaattacgtgctgatatacttttacttttttggtgttaatattttta 42511354  T
Q  221 ggtgttaaaatt 232  Q
    |||| |||||||    
T  42511353 ggtgctaaaatt 42511342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 24 - 208
Target Start/End: Original strand, 25201574 - 25201761
Alignment:
Q  24 tatataaaaagagaaatgatgtacttctagcatacaaaggagttcttgtatttgtgattcctctaaaaagtctaacactaattttgtat---at-gtatt 119  Q
    |||||||| |||| ||||||||||||||  |||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||   ||  ||||    
T  25201574 tatataaagagaggaatgatgtacttcttacatacaaaggagttcttgcatttatgatttctctaaaaagtctaacactaattttgtatcaaatattatt 25201673  T
Q  120 attgttatgagtttaacattttagannnnnnnatccaaaaatttaaaatttaattaattacgtgttgatatacttgtacttttttggtg 208  Q
     |||||||||||||||||||  |||       ||| |||| ||||||||||||||| ||||||| |||| ||||| || ||||||||||    
T  25201674 gttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgatgtactttta-ttttttggtg 25201761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 51337972 - 51338016
Alignment:
Q  163 taaaatttaattaattacgtgttgatatacttgtacttttttggt 207  Q
    |||||||||||||||||||||||||||||||| || |||||||||    
T  51337972 taaaatttaattaattacgtgttgatatacttttatttttttggt 51338016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 28143221 - 28143177
Alignment:
Q  163 taaaatttaattaattacgtgttgatatacttgtacttttttggt 207  Q
    |||||||||||| ||||||||||||||||||| || |||||||||    
T  28143221 taaaatttaattgattacgtgttgatatacttttatttttttggt 28143177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 100
Target Start/End: Complemental strand, 20152118 - 20152043
Alignment:
Q  25 atataaaaagagaaatgatgtacttctagcatacaaaggagttcttgtatttgtgattcctctaaaaagtctaaca 100  Q
    |||||||||||  |||||| ||||| || | || ||||||||||||| |||| | ||||||||||||||| |||||    
T  20152118 atataaaaagatgaatgatatacttgtaacttataaaggagttcttgcattttttattcctctaaaaagtttaaca 20152043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 93; Significance: 2e-45; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 25 - 232
Target Start/End: Original strand, 47185242 - 47185453
Alignment:
Q  25 atataaaaagagaaatgatgtacttctagcatacaaaggagttcttgtatttgtgattcctctaaaaagtctaacactaattttgtat-atg---tatta 120  Q
    ||||||||||||||||||||||||| ||   |||||| |||||||||||| | ||||||||||||||||||||||||||||||||||| |||   ||||     
T  47185242 atataaaaagagaaatgatgtacttataatgtacaaaagagttcttgtatctatgattcctctaaaaagtctaacactaattttgtatcatgaattattg 47185341  T
Q  121 ttgttatgagtttaacattttagannnnnnnatccaaaaatttaaaatttaattaattacgtgttgatatacttgtacttttttggtgttattgttctta 220  Q
    |||||||||||||||||||  |||       |||||||  ||||||||||| |||||||| ||||||||||||| | ||||| |||||||||| ||||||    
T  47185342 ttgttatgagtttaacattggagaattttgcatccaaatgtttaaaatttagttaattacttgttgatatactttttcttttctggtgttattattctta 47185441  T
Q  221 ggtgttaaaatt 232  Q
    ||||| ||||||    
T  47185442 ggtgtcaaaatt 47185453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 162 - 261
Target Start/End: Original strand, 44879852 - 44879951
Alignment:
Q  162 ttaaaatttaattaattacgtgttgatatacttgtacttttttggtgttattgttcttaggtgttaaaattgtaatttccttcgtaggtgctattgttct 261  Q
    |||||||||| |||||||||||||||||||||| ||||| |||||||||||| |||||||||| ||||||| || | | ||||| | ||| |||||||||    
T  44879852 ttaaaatttagttaattacgtgttgatatacttttacttgtttggtgttattattcttaggtgctaaaattttagtctacttcgcatgtgttattgttct 44879951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 55 - 107
Target Start/End: Original strand, 44879476 - 44879528
Alignment:
Q  55 atacaaaggagttcttgtatttgtgattcctctaaaaagtctaacactaattt 107  Q
    |||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  44879476 atacaaaggagttcttgtatctatgattcctctaaaaagtctaacactaattt 44879528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 163 - 213
Target Start/End: Complemental strand, 23044670 - 23044620
Alignment:
Q  163 taaaatttaattaattacgtgttgatatacttgtacttttttggtgttatt 213  Q
    |||||||||||||||||||||||||||||||| || ||||||||| |||||    
T  23044670 taaaatttaattaattacgtgttgatatacttttatttttttggttttatt 23044620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 31884730 - 31884686
Alignment:
Q  163 taaaatttaattaattacgtgttgatatacttgtacttttttggt 207  Q
    |||||||||||||||||||||||||||||||| || |||||||||    
T  31884730 taaaatttaattaattacgtgttgatatacttttatttttttggt 31884686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 92; Significance: 9e-45; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 38 - 232
Target Start/End: Original strand, 12028036 - 12028233
Alignment:
Q  38 aatgatgtacttctagcatacaaaggagttcttgtatttgtgattcctctaaaaagtctaacactaattttgtat-atgtatta---ttgttatgagttt 133  Q
    ||||||||| |||| | |||||||||||||||||||| | |||||||||| |||||||||||||||||||||||| ||||||||   |||||||||||||    
T  12028036 aatgatgtatttcttgtatacaaaggagttcttgtatctatgattcctct-aaaagtctaacactaattttgtatcatgtattattgttgttatgagttt 12028134  T
Q  134 aacattttagannnnnnnatccaaaaatttaaaatttaattaattacgtgttgatatacttgtacttttttggtgttattgttcttaggtgttaaaatt 232  Q
    ||||||  |||       |||||||| ||||||||||| |||||||||| ||||||||||| |||||||||||||||||| || ||||||| |||||||    
T  12028135 aacattggagaattttgcatccaaaagtttaaaatttagttaattacgttttgatatacttttacttttttggtgttattatttttaggtgctaaaatt 12028233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 25 - 224
Target Start/End: Complemental strand, 47397342 - 47397134
Alignment:
Q  25 atataaaaagagaaatgatgtacttctagcatacaaaggagttcttgtatttgtgattcctctaaaaagtctaacactaattttgtat-atgta---tta 120  Q
    ||||||| |||| |||||||| ||||||||||| ||||||||| |||||||| ||||||||||||||||| ||| ||||||||||||| |||||   ||     
T  47397342 atataaagagaggaatgatgtccttctagcatataaaggagttattgtatttatgattcctctaaaaagtgtaaaactaattttgtatcatgtatttttg 47397243  T
Q  121 ttgttatgagtttaacatttt-----agannnnnnnatccaaaaatttaaaatttaattaattacgtgttgatatacttgtacttttttggtgttattgt 215  Q
    ||||||||||||||||||| |     |||       ||||||||||||||||||||||||||||  ||||||||||||| |||||||||||||||||| |    
T  47397242 ttgttatgagtttaacattatattggagaatttaccatccaaaaatttaaaatttaattaattatatgttgatatacttttacttttttggtgttattat 47397143  T
Q  216 tcttaggtg 224  Q
    |||||||||    
T  47397142 tcttaggtg 47397134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 81 - 232
Target Start/End: Original strand, 48646244 - 48646399
Alignment:
Q  81 ttcctctaaaaagtctaacactaattttgtat-atgtattattgtt---atgagtttaacattttagannnnnnnatccaaaaatttaaaatttaattaa 176  Q
    |||||||||||| ||||||||||||||| ||| |||||||||||||   ||||||||||||||  |||       ||| |||  ||||||||||||||||    
T  48646244 ttcctctaaaaattctaacactaattttatatcatgtattattgttgttatgagtttaacattgaagaattttgcatctaaatgtttaaaatttaattaa 48646343  T
Q  177 ttacgtgttgatatacttgtacttttttggtgttattgttcttaggtgttaaaatt 232  Q
    || ||||||||||||||| |||||||||||||||||| |||||||||| |||||||    
T  48646344 ttgcgtgttgatatacttttacttttttggtgttattattcttaggtgctaaaatt 48646399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 25 - 188
Target Start/End: Complemental strand, 5208604 - 5208437
Alignment:
Q  25 atataaaaagagaaatgatgtacttctagcatacaaaggagttcttgtatttgtgattcctctaaaaagtctaacactaattttgtat-atgtatta--- 120  Q
    ||||||||||   ||||||| |||||||| |||| || |||||||||||| | ||||| ||||||||||||||||||||||||||||| || |||||       
T  5208604 atataaaaagcagaatgatgcacttctagtatacgaatgagttcttgtatctatgatttctctaaaaagtctaacactaattttgtatcatatattactg 5208505  T
Q  121 ttgttatgagtttaacattttagannnnnnnatccaaaaatttaaaatttaattaattacgtgttgat 188  Q
    |||||||| || ||||||| ||||       |||||||| ||||||||||| |||||||  |||||||    
T  5208504 ttgttatgggtctaacattgtagaattttgcatccaaaagtttaaaatttagttaattatatgttgat 5208437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 60 - 112
Target Start/End: Complemental strand, 12783675 - 12783623
Alignment:
Q  60 aaggagttcttgtatttgtgattcctctaaaaagtctaacactaattttgtat 112  Q
    ||||||||||||||| | |||||||||||||||||||| ||||||||||||||    
T  12783675 aaggagttcttgtatctatgattcctctaaaaagtctaccactaattttgtat 12783623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 176 - 232
Target Start/End: Complemental strand, 12783617 - 12783561
Alignment:
Q  176 attacgtgttgatatacttgtacttttttggtgttattgttcttaggtgttaaaatt 232  Q
    ||||||||||||||||||| |||||||||||||||||  | |||||||| |||||||    
T  12783617 attacgtgttgatatacttttacttttttggtgttataatacttaggtgctaaaatt 12783561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 28945585 - 28945541
Alignment:
Q  163 taaaatttaattaattacgtgttgatatacttgtacttttttggt 207  Q
    |||||||||||||||||||||||||||||||| || |||||||||    
T  28945585 taaaatttaattaattacgtgttgatatacttttatttttttggt 28945541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 36297023 - 36297067
Alignment:
Q  163 taaaatttaattaattacgtgttgatatacttgtacttttttggt 207  Q
    |||||||||||||||||||||||||||||||| || |||||||||    
T  36297023 taaaatttaattaattacgtgttgatatacttttatttttttggt 36297067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 42722558 - 42722602
Alignment:
Q  163 taaaatttaattaattacgtgttgatatacttgtacttttttggt 207  Q
    |||||||||||||||||||||||||||||||| || |||||||||    
T  42722558 taaaatttaattaattacgtgttgatatacttttatttttttggt 42722602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 72
Target Start/End: Complemental strand, 12783815 - 12783769
Alignment:
Q  25 atataaaaagagaaatgatgtacttctagcatacaaaggagttcttgt 72  Q
    |||||||||||| |||||||||||||||| |||| |||||||||||||    
T  12783815 atataaaaagaggaatgatgtacttctaggatac-aaggagttcttgt 12783769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 6e-43; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 29 - 220
Target Start/End: Original strand, 25621719 - 25621914
Alignment:
Q  29 aaaaagagaaatgatgtacttctagcatacaaaggagttcttgtatttgtgattcctctaaaaagtctaacactaattttgtat-atgtatta---ttgt 124  Q
    |||||||| ||||||||||||| || ||||||| ||||| |||||||| |||||||||||||| |||||||||||||||||||| ||||||||   ||||    
T  25621719 aaaaagaggaatgatgtacttccagtatacaaatgagttattgtatttatgattcctctaaaaggtctaacactaattttgtatcatgtattattgttgt 25621818  T
Q  125 tatgagtttaacattttagannnnnnnatccaaaaatttaaaatttaattaattacgtgttgatatacttgtacttttttggtgttattgttctta 220  Q
    |||||||||||||||  |||        ||||||| |||||||||||| |||||||||||||||||| || |||||| ||||||||||| ||||||    
T  25621819 tatgagtttaacattggagaattttgcttccaaaagtttaaaatttaactaattacgtgttgatatatttttactttgttggtgttattattctta 25621914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 25 - 213
Target Start/End: Complemental strand, 43672851 - 43672658
Alignment:
Q  25 atataaaaagagaaatgatgtacttctagcatacaaaggagttcttgtatttgtgattcctctaaaaagtctaacactaattttgtat-atgtattat-- 121  Q
    |||||||||||| |||||||||||| || |||| |||||||||   |||| | ||||||||||||||||||||| ||| ||||||||| | |||||||      
T  43672851 atataaaaagaggaatgatgtacttgtaacatataaaggagttacggtatctttgattcctctaaaaagtctaatactgattttgtatcaagtattattg 43672752  T
Q  122 -tgttatgagttt-aacattttagannnnnnnatccaaaaatttaaaatttaattaattacgtgttgatatacttgtacttttttggtgttatt 213  Q
     ||||||| |||| || |||  |||       ||||||||| ||||||||||||||| || |||||||||| |||  | |||||||||||||||    
T  43672751 atgttatgggtttaaatattggagaggtctatatccaaaaagttaaaatttaattaaataagtgttgatattctttaatttttttggtgttatt 43672658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 25 - 112
Target Start/End: Complemental strand, 38422476 - 38422389
Alignment:
Q  25 atataaaaagagaaatgatgtacttctagcatacaaaggagttcttgtatttgtgattcctctaaaaagtctaacactaattttgtat 112  Q
    |||||||||||| |||||||||||| || |||| ||||||||||| |||| | |||||| ||||||||||||||||||  ||||||||    
T  38422476 atataaaaagaggaatgatgtacttgtaacatataaaggagttctagtatctttgattcttctaaaaagtctaacactggttttgtat 38422389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 152 - 232
Target Start/End: Original strand, 6883630 - 6883709
Alignment:
Q  152 atccaaaaatttaaaatttaattaattacgtgttgatatacttgtacttttttggtgttattgttcttaggtgttaaaatt 232  Q
    |||||||||||||||||||||||||||| |||||||||||||| ||||| ||| ||||| || || ||||||| |||||||    
T  6883630 atccaaaaatttaaaatttaattaattatgtgttgatatactt-tacttgttttgtgtttttatttttaggtgctaaaatt 6883709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 25 - 224
Target Start/End: Original strand, 14904301 - 14904504
Alignment:
Q  25 atataaaaagagaaatgatgtacttctagcatacaaaggagttcttgtatttgtgattcctctaaaaagtctaacactaattttgtat-atgtatta--- 120  Q
    |||||||||||| | |||| ||||| ||| ||| ||| ||||| |||| | | |||||| |||||||| ||||||| ||||||||||| ||||||||       
T  14904301 atataaaaagaggagtgatatacttatagtatataaatgagttattgtttctatgattcttctaaaaaatctaacaataattttgtatcatgtattattg 14904400  T
Q  121 ttgttatgagtttaacattttagannnnnnnatccaaaaatttaaaatttaattaattacgtgttgatatacttgtacttttttggtgttattgttctta 220  Q
    |||||| ||| ||||||||  | |       || ||||| ||||||||||| |||||||  |||||  |||||| |||||||||||||||||| || |||    
T  14904401 ttgttaggaggttaacattggataattttgcattcaaaagtttaaaatttagttaattatatgttggcatacttttacttttttggtgttattattttta 14904500  T
Q  221 ggtg 224  Q
    ||||    
T  14904501 ggtg 14904504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 163 - 213
Target Start/End: Complemental strand, 6271380 - 6271330
Alignment:
Q  163 taaaatttaattaattacgtgttgatatacttgtacttttttggtgttatt 213  Q
    |||||||||||||||||||||||||||||||| || ||||||||| |||||    
T  6271380 taaaatttaattaattacgtgttgatatacttttatttttttggttttatt 6271330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 90105 - 90061
Alignment:
Q  163 taaaatttaattaattacgtgttgatatacttgtacttttttggt 207  Q
    |||||||||||||||||||||||||||||||| || |||||||||    
T  90105 taaaatttaattaattacgtgttgatatacttttatttttttggt 90061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 29303497 - 29303541
Alignment:
Q  163 taaaatttaattaattacgtgttgatatacttgtacttttttggt 207  Q
    |||||||||||||||||||||||||||||||| || |||||||||    
T  29303497 taaaatttaattaattacgtgttgatatacttttatttttttggt 29303541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 205
Target Start/End: Original strand, 19678357 - 19678399
Alignment:
Q  163 taaaatttaattaattacgtgttgatatacttgtacttttttg 205  Q
    |||||||||||||||||||||||||||||||| || |||||||    
T  19678357 taaaatttaattaattacgtgttgatatacttttatttttttg 19678399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 205
Target Start/End: Complemental strand, 45277276 - 45277234
Alignment:
Q  163 taaaatttaattaattacgtgttgatatacttgtacttttttg 205  Q
    |||||||||||||||||||||||||||||||| || |||||||    
T  45277276 taaaatttaattaattacgtgttgatatacttttatttttttg 45277234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 6883552 - 6883601
Alignment:
Q  25 atataaaaagagaaatgatgtacttctagcatacaaaggagttcttgtat 74  Q
    |||||||||||| |||||||||||| ||| ||||||| ||||||||||||    
T  6883552 atataaaaagaggaatgatgtacttttagtatacaaatgagttcttgtat 6883601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 205
Target Start/End: Complemental strand, 7880133 - 7880091
Alignment:
Q  163 taaaatttaattaattacgtgttgatatacttgtacttttttg 205  Q
    |||||||||| ||||||||||||||||||||| || |||||||    
T  7880133 taaaatttaactaattacgtgttgatatacttttatttttttg 7880091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 5e-37; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 25 - 203
Target Start/End: Original strand, 1830958 - 1831137
Alignment:
Q  25 atataaaaagagaaatgatgtacttctagcatacaaaggagttcttgtatttgtgattcctctaaaaagtctaacactaattttgtat-atgtattattg 123  Q
    |||||||||||  ||||||| |||||||||||||||||||| |||||||||  ||||| ||||||||||||||| ||||||||||||| |||||||||||    
T  1830958 atataaaaagatgaatgatgcacttctagcatacaaaggagctcttgtattattgattactctaaaaagtctaaaactaattttgtatcatgtattattg 1831057  T
Q  124 ttatgagtttaacattttagannnnnnnatccaaaaatttaaaatttaattaattacgtgttgatatacttgtacttttt 203  Q
    |||| |||||||||||  |||       |||||||| |||||||||| |  |||||||| |||||||| || ||||||||    
T  1831058 ttataagtttaacattggagaattttccatccaaaagtttaaaattttagaaattacgtattgatatatttttacttttt 1831137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 25 - 261
Target Start/End: Complemental strand, 11680684 - 11680444
Alignment:
Q  25 atataaaaagagaaatgatgtacttctagcatacaaaggagttcttgtatttgtgattcctctaaaaagtctaacactaattttgtat-atgtattattg 123  Q
    |||||||||||| |||||||||||||||| |||  | ||||||  | | | |  |||||||| ||||||||||||| ||||||||||| | |||||||||    
T  11680684 atataaaaagagtaatgatgtacttctagtatattatggagttactctgtctaagattcctcaaaaaagtctaacaataattttgtatcaagtattattg 11680585  T
Q  124 ttat---gagtttaacattttagannnnnnnatccaaaaatttaaaatttaattaattacgtgttgatatacttgtacttttttggtgttattgttctta 220  Q
    || |   ||||||||||||  |||       ||| |||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||    
T  11680584 ttgttaggagtttaacattggagaattttgcatctaaaactttaaaatttagttaattacgtgttgatatacttctacttttttggtgttattattctta 11680485  T
Q  221 ggtgttaaaattgtaatttccttcgtaggtgctattgttct 261  Q
    |||||||| |||  | | | ||||| | |||||||||||||    
T  11680484 ggtgttaatatttcagtatacttcgcatgtgctattgttct 11680444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 152 - 269
Target Start/End: Original strand, 1831162 - 1831279
Alignment:
Q  152 atccaaaaatttaaaatttaattaattacgtgttgatatacttgtacttttttggtgttattgttcttaggtgttaaaattgtaatttccttcgtaggtg 251  Q
    |||||||| |||||||| ||||||||||| |||| ||||| || || ||||||||||||||| ||||||| || |||||||  | | | ||||| || ||    
T  1831162 atccaaaagtttaaaatataattaattacatgtttatatatttctatttttttggtgttattattcttagatgctaaaatttcagtctacttcgcagatg 1831261  T
Q  252 ctattgttctctgcttct 269  Q
     ||||||||||| |||||    
T  1831262 ttattgttctctacttct 1831279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 199 - 269
Target Start/End: Complemental strand, 15603811 - 15603741
Alignment:
Q  199 ttttttggtgttattgttcttaggtgttaaaattgtaatttccttcgtaggtgctattgttctctgcttct 269  Q
    ||||||||||||||| |||||||||| |||||||  ||||| ||| | ||||||||||||||||| |||||    
T  15603811 ttttttggtgttattattcttaggtgctaaaatttcaatttactttgcaggtgctattgttctctacttct 15603741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 25 - 207
Target Start/End: Original strand, 14677914 - 14678101
Alignment:
Q  25 atataaaaagagaaatgatgtacttctagcatacaaaggagttcttgtatttgtgattcctctaaaaagtctaacac-taattttgtat-atgtattatt 122  Q
    |||||||||||| |||||| || || ||| ||||||| ||||| |||||| |  |||| ||||||||| |||||||| |  |||| ||| | ||||||||    
T  14677914 atataaaaagaggaatgatttatttgtagtatacaaatgagttattgtatcttagattactctaaaaattctaacacatttttttttatcaagtattatt 14678013  T
Q  123 gtt---atgagtttaacattttagannnnnnnatccaaaaatttaaaatttaattaattacgtgttgatatacttgtacttttttggt 207  Q
    |||   ||| ||||||||||  |||       |||||||  | |||||||||||||||||||| ||||||||||| || |||||||||    
T  14678014 gttgttatgggtttaacattggagaattttgtatccaaatgtctaaaatttaattaattacgtattgatatacttatatttttttggt 14678101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 205
Target Start/End: Complemental strand, 33516400 - 33516358
Alignment:
Q  163 taaaatttaattaattacgtgttgatatacttgtacttttttg 205  Q
    |||||||||||||||||||||||||||||||| || |||||||    
T  33516400 taaaatttaattaattacgtgttgatatacttttatttttttg 33516358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 4065150 - 4065081
Alignment:
Q  25 atataaaaagagaaatgatgtacttctagcatacaaaggagttcttgtatttgtgattcctctaaaaagt 94  Q
    |||||||| ||| |||||||| ||| || |||| |||||||||||||||| | || ||||||||||||||    
T  4065150 atataaaatgaggaatgatgttcttgtaacatataaaggagttcttgtatctttggttcctctaaaaagt 4065081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 78 - 261
Target Start/End: Original strand, 909 - 1100
Alignment:
Q  78 tgattcctctaaaaagtctaacactaattttgtat-atgtatta---ttgttatgagtttaacattttagannnnnnnatccaaaaatttaaaatttaat 173  Q
    ||||||||||||||||||||||||||||||||||| ||||||||   |||||||||||||||||||   ||       |||||| | ||||| ||||| |    
T  909 tgattcctctaaaaagtctaacactaattttgtatcatgtattattgttgttatgagtttaacattggtgaattttgcatccaatagtttaatatttagt 1008  T
Q  174 taattacgt----gttgatatacttgtacttttttggtgttattgttcttaggtgttaaaattgtaatttccttcgtaggtgctattgttct 261  Q
    ||||||| |    | |||||| ||| |||||||| ||||||||| ||||||||| |||||||| || | | ||| | | |||||||||||||    
T  1009 taattacatgatcgatgatatccttttactttttgggtgttattattcttaggttttaaaattttagtctactttgcatgtgctattgttct 1100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 1068 - 1019
Alignment:
Q  25 atataaaaagagaaatgatgtacttctagcatacaaaggagttcttgtat 74  Q
    |||||||||||| || ||||||||||||| ||||||| ||||||||||||    
T  1068 atataaaaagaggaacgatgtacttctagtatacaaaagagttcttgtat 1019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0743 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0743
Description:

Target: scaffold0743; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 2582 - 2538
Alignment:
Q  163 taaaatttaattaattacgtgttgatatacttgtacttttttggt 207  Q
    ||||||||||||||||| |||||||||||||| || |||||||||    
T  2582 taaaatttaattaattatgtgttgatatacttttatttttttggt 2538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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