View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11473_high_40 (Length: 250)
Name: NF11473_high_40
Description: NF11473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11473_high_40 |
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| [»] chr4 (7 HSPs) |
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| [»] scaffold0083 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 10 - 250
Target Start/End: Complemental strand, 38226517 - 38226277
Alignment:
| Q |
10 |
gcacagaccataaagaaagaaatggttgtgttgatgtgaagaggacaagtctcccactacaaactggtggctatgtgatctatggtgttgctcatcagca |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38226517 |
gcacagaccataaagaaagaaatggttgtgttgatgtgaagaggacaagtctcccactacaaactggtggctatgtgatctatggtgttgctcatcagca |
38226418 |
T |
|
| Q |
110 |
ttcaggtggaattggatcaactctatacgggcaggtaatttacaattttcaattgcaacagttagcgacaagttacaacttacagtaatactcaaaaata |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38226417 |
ttcaggtggaattggatcaactctatacgggcaggtaatttacaattttcaattgcaacagttagcgacaagttacaacttacagtaatactcaaaaata |
38226318 |
T |
|
| Q |
210 |
ttttgatttgaatagatatcactttttagtggcataagttt |
250 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
38226317 |
ttttgatttgaatagatatcactttttagtggcataagttt |
38226277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 27 - 155
Target Start/End: Complemental strand, 38214121 - 38213993
Alignment:
| Q |
27 |
agaaatggttgtgttgatgtgaagaggacaagtctcccactacaaactggtggctatgtgatctatggtgttgctcatcagcattcaggtggaattggat |
126 |
Q |
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||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||| |
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| T |
38214121 |
agaaatggttgtgttcatgtgatgaggacaagtctcccactacaaactggtggctatgttgtctatgctgttgctcatcagcattcaggcggaattggat |
38214022 |
T |
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| Q |
127 |
caactctatacgggcaggtaatttacaat |
155 |
Q |
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|||||||||| || |||||||||| |||| |
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| T |
38214021 |
caactctatatggacaggtaatttgcaat |
38213993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 28 - 155
Target Start/End: Complemental strand, 38253366 - 38253239
Alignment:
| Q |
28 |
gaaatggttgtgttgatgtgaagaggacaagtctcccactacaaactggtggctatgtgatctatggtgttgctcatcagcattcaggtggaattggatc |
127 |
Q |
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||||||| |||||| |||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38253366 |
gaaatgggtgtgttcatgtaaaaaggacaagtctcccactacaaaccggtggctatgtgatctatggtgttgctcatcagcattcaggtggaattggatc |
38253267 |
T |
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| Q |
128 |
aactctatacgggcaggtaatttacaat |
155 |
Q |
| |
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||| |||| || |||||||||| |||| |
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| T |
38253266 |
aaccctatttggacaggtaatttgcaat |
38253239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 7 - 155
Target Start/End: Complemental strand, 38243034 - 38242886
Alignment:
| Q |
7 |
gcagcacagaccataaagaaagaaatggttgtgttgatgtgaagaggacaagtctcccactacaaactggtggctatgtgatctatggtgttgctcatca |
106 |
Q |
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|
||||||||||||||| || |||||| |||||| ||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||| ||||| |
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| T |
38243034 |
gcagcacagaccatagggaggaaaatgggtgtgttcatgtgaagaggacaagtctcccatttcaaactggtggatatgtgatctatggtgttgcacatca |
38242935 |
T |
|
| Q |
107 |
gcattcaggtggaattggatcaactctatacgggcaggtaatttacaat |
155 |
Q |
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||||||||||||||||||||| || ||||| || |||||||||| |||| |
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| T |
38242934 |
gcattcaggtggaattggatccaccctatatggacaggtaatttccaat |
38242886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 7 - 147
Target Start/End: Complemental strand, 38238059 - 38237919
Alignment:
| Q |
7 |
gcagcacagaccataaagaaagaaatggttgtgttgatgtgaagaggacaagtctcccactacaaactggtggctatgtgatctatggtgttgctcatca |
106 |
Q |
| |
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|||||||||||||||| || ||||| |||||| ||||||||||||||||||||||| | ||||||||||||||| |||||||||||| ||||||||| |
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| T |
38238059 |
gcagcacagaccataaggagggaaattcctgtgttcatgtgaagaggacaagtctcccatttcaaactggtggctatatgatctatggtgctgctcatca |
38237960 |
T |
|
| Q |
107 |
gcattcaggtggaattggatcaactctatacgggcaggtaa |
147 |
Q |
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|||||||| |||||||||||||||||||| || ||||||| |
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| T |
38237959 |
acattcaggcggaattggatcaactctatatggacaggtaa |
38237919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 11 - 155
Target Start/End: Complemental strand, 38220175 - 38220031
Alignment:
| Q |
11 |
cacagaccataaagaaagaaatggttgtgttgatgtgaagaggacaagtctcccactacaaactggtggctatgtgatctatggtgttgctcatcagcat |
110 |
Q |
| |
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|||| ||||||| || |||||||||||||| |||||||||||| |||||||||| | ||||||||||| |||||||||||||||||||| ||||| ||| |
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| T |
38220175 |
cacaaaccataaggatggaaatggttgtgttcatgtgaagaggataagtctcccatttcaaactggtggttatgtgatctatggtgttgcacatcaacat |
38220076 |
T |
|
| Q |
111 |
tcaggtggaattggatcaactctatacgggcaggtaatttacaat |
155 |
Q |
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|| |||||||| ||||| || ||||| || |||||||||| |||| |
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| T |
38220075 |
tcgggtggaatcggatccaccctatatggacaggtaatttccaat |
38220031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 76
Target Start/End: Complemental strand, 38248213 - 38248165
Alignment:
| Q |
28 |
gaaatggttgtgttgatgtgaagaggacaagtctcccactacaaactgg |
76 |
Q |
| |
|
||||||| |||||| ||||||| ||||||||||||||||||||| |||| |
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| T |
38248213 |
gaaatgggtgtgttcatgtgaaaaggacaagtctcccactacaatctgg |
38248165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 99; Significance: 6e-49; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 29 - 155
Target Start/End: Complemental strand, 17433515 - 17433389
Alignment:
| Q |
29 |
aaatggttgtgttgatgtgaagaggacaagtctcccactacaaactggtggctatgtgatctatggtgttgctcatcagcattcaggtggaattggatca |
128 |
Q |
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|
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||| ||||||| |
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| T |
17433515 |
aaatggttgtgttcatgtgaagaggacaagtctcccactacaaactggtggatatgtgatctatgctgttgctcatcaacattcaggtggaactggatca |
17433416 |
T |
|
| Q |
129 |
actctatacgggcaggtaatttacaat |
155 |
Q |
| |
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||||||||||| |||||||||| |||| |
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| T |
17433415 |
actctatacggacaggtaatttgcaat |
17433389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 7 - 155
Target Start/End: Complemental strand, 17454616 - 17454468
Alignment:
| Q |
7 |
gcagcacagaccataaagaaagaaatggttgtgttgatgtgaagaggacaagtctcccactacaaactggtggctatgtgatctatggtgttgctcatca |
106 |
Q |
| |
|
|||||||||||||| | || |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |
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| T |
17454616 |
gcagcacagaccatgaggagggaaatggttgtgttcatgtgaagaggacaagtctcccactgcaaactggtggctatgtgatctatgctgttgctcatca |
17454517 |
T |
|
| Q |
107 |
gcattcaggtggaattggatcaactctatacgggcaggtaatttacaat |
155 |
Q |
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|||||||| ||| ||||||||||| |||| || |||||||||| |||| |
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| T |
17454516 |
acattcagggggagttggatcaactttatatggacaggtaatttgcaat |
17454468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 32 - 136
Target Start/End: Original strand, 11485773 - 11485877
Alignment:
| Q |
32 |
tggttgtgttgatgtgaagaggacaagtctcccactacaaactggtggctatgtgatctatggtgttgctcatcagcattcaggtggaattggatcaact |
131 |
Q |
| |
|
||||||||||||||| || || |||| ||||| | |||| |||||| ||||| |||||||| |||| ||||||||||||||||| ||||||||||||| |
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| T |
11485773 |
tggttgtgttgatgtcaaaagagcaagcttcccaatgcaaaatggtggttatgtcatctatggagttggtcatcagcattcaggtgcaattggatcaact |
11485872 |
T |
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| Q |
132 |
ctata |
136 |
Q |
| |
|
||||| |
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| T |
11485873 |
ctata |
11485877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 34 - 136
Target Start/End: Original strand, 11473504 - 11473606
Alignment:
| Q |
34 |
gttgtgttgatgtgaagaggacaagtctcccactacaaactggtggctatgtgatctatggtgttgctcatcagcattcaggtggaattggatcaactct |
133 |
Q |
| |
|
||||||| ||||| ||||| ||||| ||||| | |||| |||||| ||| | |||||||| |||| |||||| |||||||||| ||||||||||||||| |
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| T |
11473504 |
gttgtgtcgatgtcaagagaacaagcttcccaatgcaaaatggtggttatctcatctatggagttggtcatcaacattcaggtgcaattggatcaactct |
11473603 |
T |
|
| Q |
134 |
ata |
136 |
Q |
| |
|
||| |
|
|
| T |
11473604 |
ata |
11473606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 145
Target Start/End: Original strand, 11479681 - 11479792
Alignment:
| Q |
34 |
gttgtgttgatgtgaagaggacaagtctcccactacaaactggtggctatgtgatctatggtgttgctcatcagcattcaggtggaattggatcaactct |
133 |
Q |
| |
|
||||||||||||| ||||| |||| ||||| | |||| || || ||||| || ||||| |||| |||||||||||||||| ||||||||||||||| |
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| T |
11479681 |
gttgtgttgatgtcaagagagcaagcttcccaatgcaaaacggcggttatgtcatatatggagttggccatcagcattcaggtgcaattggatcaactct |
11479780 |
T |
|
| Q |
134 |
atacgggcaggt |
145 |
Q |
| |
|
||| || ||||| |
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| T |
11479781 |
atatggacaggt |
11479792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 145
Target Start/End: Original strand, 48339 - 48452
Alignment:
| Q |
32 |
tggttgtgttgatgtgaagaggacaagtctcccactacaaactggtggctatgtgatctatggtgttgctcatcagcattcaggtggaattggatcaact |
131 |
Q |
| |
|
||||||||||||||||||||| ||||| | ||| | |||| || || ||||| |||||||| |||| |||| |||| ||||| ||||||||||||| |
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|
| T |
48339 |
tggttgtgttgatgtgaagagtgcaagttttccaatgcaaaatgaaggttatgtcatctatggagttggtcatttgcatgcaggttcaattggatcaact |
48438 |
T |
|
| Q |
132 |
ctatacgggcaggt |
145 |
Q |
| |
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||||| || ||||| |
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|
| T |
48439 |
ctatatggacaggt |
48452 |
T |
|
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