View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11473_high_45 (Length: 242)
Name: NF11473_high_45
Description: NF11473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11473_high_45 |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 8 - 224
Target Start/End: Complemental strand, 38300518 - 38300302
Alignment:
| Q |
8 |
cattggactttccaaacttgcaaaaaatacaagttggaagtaggatgtgttgtggcattaatcatgttggcagtttcactaaaaggcaacaagaacacac |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38300518 |
cattggactttccaaacttgcaaaaaatacaagttggaagtaggatgtgttgtggcattaatcatgttggcagtttcactaaaaggcaacaagaacacac |
38300419 |
T |
|
| Q |
108 |
aaatcttttgtactcttttccactcttctaccgaaggacataacacataactatcatcatacaagtgaagactttcaaacacacgccgatatttaagagc |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38300418 |
aaatcttttgtactcttttccactcttctaccgaaggacataacacataactatcatcatacaagtgaagactttcaaacacacgccgatatttaagagc |
38300319 |
T |
|
| Q |
208 |
actttcaagcattgaat |
224 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
38300318 |
actttcaagcattgaat |
38300302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 4 - 219
Target Start/End: Complemental strand, 38326017 - 38325802
Alignment:
| Q |
4 |
aacacattggactttccaaacttgcaaaaaatacaagttggaagtaggatgtgttgtggcattaatcatgttggcagtttcactaaaaggcaacaagaac |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||| ||||||||||||| |||||||||| ||||||||||||||| |
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| T |
38326017 |
aacacattggactttccaaacttgcaaaaattacaaattggaagtaggatgcgttgtgtcattaatcatgttagcagtttcacaaaaaggcaacaagaat |
38325918 |
T |
|
| Q |
104 |
acacaaatcttttgtactcttttccactcttctaccgaaggacataacacataactatcatcatacaagtgaagactttcaaacacacgccgatatttaa |
203 |
Q |
| |
|
|||| ||||||| |||||||||| ||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
38325917 |
gcacagatcttttctactcttttctactcttctaccgaaggacataactcataattatcctcatacaagtgaagactttcaaacacacgccgatatttaa |
38325818 |
T |
|
| Q |
204 |
gagcactttcaagcat |
219 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
38325817 |
gagcactttcaagcat |
38325802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 38321270 - 38321052
Alignment:
| Q |
1 |
taaaacacattggactttccaaacttgcaaaaaatacaagttggaagtaggatgtgttgtggcattaatcatgttggcagtttcactaaaaggcaacaag |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||| |||| ||||||||||||| |||||||| || |||||||||||| |
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| T |
38321270 |
taaaacacattgaactttccaaacttgcaaaaaatacatgtttgaagtaggatgtgctgtgccattaatcatgttagcagtttcccttaaaggcaacaag |
38321171 |
T |
|
| Q |
101 |
aacacacaaatcttttgtactcttttccactcttctaccgaaggacataacacataactatcatcatacaagtgaagactttcaaacacacgccgatatt |
200 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| || ||||| |
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| T |
38321170 |
aacacacaaatcttttcaactcttttccattcttctaccgaaggacataactcataattatcatcatacaagtgaagactttcaaacacacacctatatt |
38321071 |
T |
|
| Q |
201 |
taagagcactttcaagcat |
219 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
38321070 |
taagagcactttcaagcat |
38321052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 38313766 - 38313548
Alignment:
| Q |
1 |
taaaacacattggactttccaaacttgcaaaaaatacaagttggaagtaggatgtgttgtggcattaatcatgttggcagtttcactaaaaggcaacaag |
100 |
Q |
| |
|
|||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||| |||||| |
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|
| T |
38313766 |
taaaacacattgaagtttccaaacttgcgaaaaatacaagttggaagtaggatgtgttgcgccattaatcatgttggcagtttcacaaaaaggtaacaag |
38313667 |
T |
|
| Q |
101 |
aacacacaaatcttttgtactcttttccactcttctaccgaaggacataacacataactatcatcatacaagtgaagactttcaaacacacgccgatatt |
200 |
Q |
| |
|
|| |||||||||||| |||||||||||| |||||| ||| ||||||| | ||||| |||||||||||||||||||||||||||| ||||| |||||| |
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|
| T |
38313666 |
aatgcacaaatcttttctactcttttccagtcttctgccgcaggacatgaatcataatcatcatcatacaagtgaagactttcaaacgcacgctgatatt |
38313567 |
T |
|
| Q |
201 |
taagagcactttcaagcat |
219 |
Q |
| |
|
|||||||||||| |||||| |
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|
| T |
38313566 |
taagagcactttgaagcat |
38313548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 4 - 219
Target Start/End: Complemental strand, 38309169 - 38308954
Alignment:
| Q |
4 |
aacacattggactttccaaacttgcaaaaaatacaagttggaagtaggatgtgttgtggcattaatcatgttggcagtttcactaaaaggcaacaagaac |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||| ||||||||||||| ||||||||||||||||| |
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|
| T |
38309169 |
aacacattggactttccaaacttgcaaaaaatacaagttggaagtacgatgtgttgcaccatttatcgtgttggcagtttcgctaaaaggcaacaagaat |
38309070 |
T |
|
| Q |
104 |
acacaaatcttttgtactcttttccactcttctaccgaaggacataacacataactatcatcatacaagtgaagactttcaaacacacgccgatatttaa |
203 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| ||| ||||||| | |||||| ||| ||||||||||||||||||||||| || || ||||||||| |
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|
| T |
38309069 |
gcacaaatcttttctactcttttccactcttctgccgcaggacatgaatcataaccatcgtcatacaagtgaagactttcaaatgcaagctgatatttaa |
38308970 |
T |
|
| Q |
204 |
gagcactttcaagcat |
219 |
Q |
| |
|
||||||||| |||||| |
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|
| T |
38308969 |
gagcactttgaagcat |
38308954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 4 - 219
Target Start/End: Complemental strand, 38317172 - 38316957
Alignment:
| Q |
4 |
aacacattggactttccaaacttgcaaaaaatacaagttggaagtaggatgtgttgtggcattaatcatgttggcagtttcactaaaaggcaacaagaac |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||| ||||||||||||||||||||||| |||||||| ||||||| |
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|
| T |
38317172 |
aacacattggactttccaaacttgcaaaaaacacaagtttgaagtaggatgcgttgtgtcattaatcatgttggcagtttcataaaaaggcagcaagaac |
38317073 |
T |
|
| Q |
104 |
acacaaatcttttgtactcttttccactcttctaccgaaggacataacacataactatcatcatacaagtgaagactttcaaacacacgccgatatttaa |
203 |
Q |
| |
|
|||||||||||| |||||||||||||| | | | ||||||||||| ||| |||||||||||||||||| ||||||||| ||| |||||||||||| |
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|
| T |
38317072 |
gcacaaatcttttcaactcttttccactcatgtgctaaaggacataactggtaattatcatcatacaagtgaaaactttcaaatacatgccgatatttaa |
38316973 |
T |
|
| Q |
204 |
gagcactttcaagcat |
219 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
38316972 |
gagcactttcaagcat |
38316957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 4 - 219
Target Start/End: Complemental strand, 38306431 - 38306226
Alignment:
| Q |
4 |
aacacattggactttccaaacttgcaaaaaatacaagttggaagtaggatgtgttgtggcattaatcatgttggcagtttcactaaaaggcaacaagaac |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||| ||||||||||| ||| |
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|
| T |
38306431 |
aacacattggactttccaaacttgcaaaaaatacaagttggaagtgggatgtgttgcaccattgatcatgttggcagtttcacgaaaaggcaacatgaat |
38306332 |
T |
|
| Q |
104 |
acacaaatcttttgtactcttttccactcttctaccgaaggacataacacataactatcatcatacaagtgaagactttcaaacacacgccgatatttaa |
203 |
Q |
| |
|
|||||||| |||||||||||| | | |||||||| | |||||| | ||||||||||||||| ||||||||||||| | ||||||||| |
|
|
| T |
38306331 |
gcacaaatc----------ttttccactcttttgcagaaggacacgagacataatcaccatcatacaagtgaaaactttcaaacacatgttgatatttaa |
38306242 |
T |
|
| Q |
204 |
gagcactttcaagcat |
219 |
Q |
| |
|
||||||| || ||||| |
|
|
| T |
38306241 |
gagcactatcgagcat |
38306226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 4 - 218
Target Start/End: Original strand, 38850173 - 38850387
Alignment:
| Q |
4 |
aacacattggactttccaaacttgcaaaaaatacaagttggaagtaggatgtgttgtggcattaatcatgttggcagtttcactaaaaggcaacaagaac |
103 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||| |
|
|
| T |
38850173 |
aacacattggactttccaaacttgtaaaaaatacaagttggaagtaggatgtgttgtgctattaatcatgttggcagtttcacaaaaaggcaacaggaat |
38850272 |
T |
|
| Q |
104 |
acacaaatcttttgtactcttttccactcttctaccgaaggacataacacataactatcatcatacaagtgaagactttcaaacacacgccgatatttaa |
203 |
Q |
| |
|
|||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||| ||| ||| ||||||| |
|
|
| T |
38850273 |
gcacaaatcttttctactcttttccactcttccgccgaaggacataaatcataactatcatcatacaagtgaaaactttcaaacgcacaccggtatttaa |
38850372 |
T |
|
| Q |
204 |
gagcactttcaagca |
218 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
38850373 |
gagctctttcaagca |
38850387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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