View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11473_high_5 (Length: 481)
Name: NF11473_high_5
Description: NF11473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11473_high_5 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 19 - 481
Target Start/End: Original strand, 10928838 - 10929300
Alignment:
| Q |
19 |
aggccgatttctacttcattgttagtgttgaacatttgattagttagctctgttgatggtctcgtaattggatctatcctctcactatcatttttagttg |
118 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
10928838 |
aggccgatttctacttcattgttagtgtttaacatttgattagttagctctgttgatggtctcataattggatctatcctctcactatcatttttagttg |
10928937 |
T |
|
| Q |
119 |
ttaattttaactgatcctcactaggnnnnnnnncttttacaaatgaactacagaacggtgctacgacggattttgaagtaaggcttggagcatggtcatg |
218 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10928938 |
ttaattttaactgatcctcactaggttttttttcttttacaaatgaactacagaatgttgctacgacggattttgaagtaaggcttggagcatggtcatg |
10929037 |
T |
|
| Q |
219 |
ggataatgcaactggcgaagaacttcgtgtgggtgctggactgggagaaccatatggcatcacctggtgtgcagttgagtattttgaaaaaagtggtgct |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10929038 |
ggataatgcaactggcgaagaacttcgtgtgggtgctggactgggagaaccatatggcatcacctggtgtgcagttgagtattttgaaaaaagtggtgct |
10929137 |
T |
|
| Q |
319 |
atattacgcttgctcctgcaatatgtctcaaatagttgtcactgtggaagaactattctacaccatgctatcctttgtggcaatgtcgaggctgttagga |
418 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10929138 |
atattacgcttgctcctgcaacatgtctcaaataattgtcactgtggaagaactattctacaccatgctatcctttgtggcaatgtcgaggctgttagga |
10929237 |
T |
|
| Q |
419 |
tactcttagaatgtggtgctaatgtggaatccttagtcaaaacaaccagcaagaccgagttcc |
481 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10929238 |
tactcttagaatgtggtgctaatgtggaatccttagtcaaaacaaccagcaagaccgagttcc |
10929300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University