View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11473_high_55 (Length: 227)
Name: NF11473_high_55
Description: NF11473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11473_high_55 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 106; Significance: 3e-53; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 81 - 227
Target Start/End: Original strand, 24309357 - 24309505
Alignment:
| Q |
81 |
ggtacccttcataagagacatagtagttcaattccttctattta--aatgctttggttggtgctatttaacattctcaaaaacaaaacctaacatacaat |
178 |
Q |
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| T |
24309357 |
ggtacccttcataagagacatagtagttcaattccttctatatataaattctttggttctatttatttaccattctcaaaaacaaaacctaacatacaat |
24309456 |
T |
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| Q |
179 |
ttttgttttcttcttaggatggagccacctcatcacattttcttagcaa |
227 |
Q |
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| T |
24309457 |
ttttgttttcttcttaggatggagccacctcatcacattttcttagcaa |
24309505 |
T |
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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 24309277 - 24309307
Alignment:
| Q |
1 |
gtattttcaggtgttcagaacacttctatag |
31 |
Q |
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| T |
24309277 |
gtattttcaggtgttcagaacacttctatag |
24309307 |
T |
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