View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11473_high_7 (Length: 457)
Name: NF11473_high_7
Description: NF11473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11473_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 445
Target Start/End: Original strand, 23886213 - 23886655
Alignment:
| Q |
1 |
aatgtttctattgttcaatttggttgattttgcacttgtttaannnnnnngagtaagcttgctggtttaaattaactttatcaaattttaggatcgttag |
100 |
Q |
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| T |
23886213 |
aatgtttctattgttcaatttggttgattttgcacttgtttaattttttttagtaagcttgctggtt-aaattaactttatcagattttaggatcgtcag |
23886311 |
T |
|
| Q |
101 |
atattttaattgatcgtggcgaagaaatgctgaagagtttgttgttgtctttaatcagagcctggcaaaaaccccc-acagatacattgattaattaaac |
199 |
Q |
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| T |
23886312 |
atattttaattga-cgtgtcga-gaaatgctgaagagtttgttgttgtctttaatcagagcctggcaaaaaccccccacagataccttgattaattaaac |
23886409 |
T |
|
| Q |
200 |
gacgatattataataagccttggaaaatccgnnnnnnnnnngtagataaattagaatataatcaaaagttccgtcaaaaacaaaaatcaattctcttcta |
299 |
Q |
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| T |
23886410 |
gacgatattctaataagccttggaaaatccgaaaaaaaaaagtagataaattagaatatagtcaaaagttccgtcaaaaacaaaaatcaattctcttcta |
23886509 |
T |
|
| Q |
300 |
ataagtagatcttgtttcttagtagtatcatcacacaaaacacattcacaactcctcgcaacaatgttgttcttcttacaagacccgttactcttcagct |
399 |
Q |
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| T |
23886510 |
ataagtagatcttgttttttagtagtatcatcacacaatacacattcacaactcctcgcaacaatgttgttcttcttacaagacccgtcactcttcagct |
23886609 |
T |
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| Q |
400 |
actccctccacacacttttcctcatagcaccaccaaccttcatctc |
445 |
Q |
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| T |
23886610 |
actccctccacacacttttcctcatagcaccaccaaccttcatctc |
23886655 |
T |
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Back To:
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Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 358 - 445
Target Start/End: Complemental strand, 24346357 - 24346270
Alignment:
| Q |
358 |
caacaatgttgttcttcttacaagacccgttactcttcagctactccctccacacacttttcctcatagcaccaccaaccttcatctc |
445 |
Q |
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|||||||||||||||||||||||||| | | |||||||| |||||| ||| ||| || ||||||||||||||||||||||||||||| |
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| T |
24346357 |
caacaatgttgttcttcttacaagactcatcactcttcaactactctctcttcactctcttcctcatagcaccaccaaccttcatctc |
24346270 |
T |
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