View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11473_high_9 (Length: 406)

Name: NF11473_high_9
Description: NF11473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11473_high_9
NF11473_high_9
[»] chr8 (8 HSPs)
chr8 (73-397)||(38300546-38300869)
chr8 (73-397)||(38309193-38309516)
chr8 (73-397)||(38321291-38321614)
chr8 (73-397)||(38317196-38317519)
chr8 (88-397)||(38326041-38326349)
chr8 (109-356)||(38313827-38314072)
chr8 (73-275)||(38306564-38306766)
chr8 (315-397)||(38306455-38306536)
[»] chr4 (1 HSPs)
chr4 (73-397)||(38849817-38850149)


Alignment Details
Target: chr8 (Bit Score: 273; Significance: 1e-152; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 73 - 397
Target Start/End: Complemental strand, 38300869 - 38300546
Alignment:
Q  73 cttacatcaaataggccgtcagataaagagtttaacttctcttgaaatggcatgctagaagattggtcctggataattctttgcacgcaagaaggagtac 172  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38300869 cttacatcaaataggccgtcagataaagagtttaacttctcttgaaatggcatgctagaagattggtcctggataattctttgcacgcaagaaggagtac 38300770  T
Q  173 ttttgctagaatacttgtcaaatagcatgtacaacttgctctttacttgctgcaacttcctttcgcaggttgatgcatcaagttttgagtaacaataagc 272  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |  |||||||||||||||||||||||||||| |||    
T  38300769 ttttgctagaatacttgtcaaatagcatgtacaacttgctctttacttgttgcaacttcctttcacgtgttgatgcatcaagttttgagtaacaattagc 38300670  T
Q  273 caatgtggaaagctttatccttgggtcaagaaccgctcccaatgcaagaacaacactatactcttcccaatatttctcaaactttggtcaacatcctttc 372  Q
    |||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||    
T  38300669 caatgttgaaagcttaatccttgggtcaagaaccgctcccattgcaagaacaacactatactcatcccaatatttctcaaac-ttggtcagcatcctttc 38300571  T
Q  373 aaccattctctttatatcttcatct 397  Q
    | |||||||||||||||||||||||    
T  38300570 agccattctctttatatcttcatct 38300546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 73 - 397
Target Start/End: Complemental strand, 38309516 - 38309193
Alignment:
Q  73 cttacatcaaataggccgtcagataaagagtttaacttctcttgaaatggcatgctagaagattggtcctggataattctttgcacgcaagaaggagtac 172  Q
    ||||||||||||||||| | ||||||||| |||||||||| ||| |||||||  ||||||||||||||||| ||  |||||||||||| ||||| |||||    
T  38309516 cttacatcaaataggccctgagataaagactttaacttcttttgcaatggcacactagaagattggtcctgaattgttctttgcacgccagaagaagtac 38309417  T
Q  173 ttttgctagaatacttgtcaaatagcatgtacaacttgctctttacttgctgcaacttcctttcgcaggttgatgcatcaagttttgagtaacaataagc 272  Q
    |||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  38309416 ttttgcaagaattcttgtgaaatagcatgtacaacttgctctttacttgctgcaacttcctttcgcaggttgatgcattaagttttgagtaacaataagc 38309317  T
Q  273 caatgtggaaagctttatccttgggtcaagaaccgctcccaatgcaagaacaacactatactcttcccaatatttctcaaactttggtcaacatcctttc 372  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  38309316 caatgtggaaagctttatccttgggtcaagaaccgctcccaatgcaagaacaacactatactcttcccaatatttctcaaac-ttggtcaacatcctttc 38309218  T
Q  373 aaccattctctttatatcttcatct 397  Q
    |||||||||||||||||||||||||    
T  38309217 aaccattctctttatatcttcatct 38309193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 73 - 397
Target Start/End: Complemental strand, 38321614 - 38321291
Alignment:
Q  73 cttacatcaaataggccgtcagataaagagtttaacttctcttgaaatggcatgctagaagattggtcctggataattctttgcacgcaagaaggagtac 172  Q
    ||||||||||||||||||| |||| |||| || || |||| ||| ||||||||||||||||||| |||||| ||| |||||||||| | ||||| | |||    
T  38321614 cttacatcaaataggccgtgagatgaagacttcaatttcttttgcaatggcatgctagaagattcgtcctgaatagttctttgcaccccagaagaaatac 38321515  T
Q  173 ttttgctagaatacttgtcaaatagcatgtacaacttgctctttacttgctgcaacttcctttcgcaggttgatgcatcaagttttgagtaacaataagc 272  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||| ||||  ||  ||||||||||||||||||||| |||    
T  38321514 ttttgctagaatacttgtcaaatagcatgtacaacttactctttacttcttgcaacttcctttcacaggccgaaacatcaagttttgagtaacaatgagc 38321415  T
Q  273 caatgtggaaagctttatccttgggtcaagaaccgctcccaatgcaagaacaacactatactcttcccaatatttctcaaactttggtcaacatcctttc 372  Q
    |||||| |||| ||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||| |||||||||    
T  38321414 caatgtagaaaacttcatccgtgggtcaagaaccgctcccaatgcaagaacaacactatactcatcccaatatttctcaaac-ttgctcatcatcctttc 38321316  T
Q  373 aaccattctctttatatcttcatct 397  Q
    | |||||||||||||| ||||||||    
T  38321315 agccattctctttatagcttcatct 38321291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 73 - 397
Target Start/End: Complemental strand, 38317519 - 38317196
Alignment:
Q  73 cttacatcaaataggccgtcagataaagagtttaacttctcttgaaatggcatgctagaagattggtcctggataattctttgcacgcaagaaggagtac 172  Q
    |||||||  |||||||||| ||||||||| ||||| |||| ||| ||||||||| ||||||||||||||||  || ||||||  | || ||||| ||| |    
T  38317519 cttacattgaataggccgtgagataaagactttaatttcttttgcaatggcatggtagaagattggtcctgagtagttctttttaggccagaagaagtgc 38317420  T
Q  173 ttttgctagaatacttgtcaaatagcatgtacaacttgctctttacttgctgcaacttcctttcgcaggttgatgcatcaagttttgagtaacaataagc 272  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||   ||||||||||||| ||||||||||||||||||||||||    
T  38317419 ttttgctagaatacttgtcaaatagcatgtacaactttctctttactagttgcaacttctgctcgcaggttgatggatcaagttttgagtaacaataagc 38317320  T
Q  273 caatgtggaaagctttatccttgggtcaagaaccgctcccaatgcaagaacaacactatactcttcccaatatttctcaaactttggtcaacatcctttc 372  Q
    ||| || |||| ||| |||| |||||||||||| ||||||| ||||||||||||||||||||| ||||||||||| |||||| | | ||| |||||||||    
T  38317319 caacgtcgaaaacttcatccgtgggtcaagaactgctcccagtgcaagaacaacactatactcatcccaatatttgtcaaac-tcgctcatcatcctttc 38317221  T
Q  373 aaccattctctttatatcttcatct 397  Q
    | |||||||||||||| ||| ||||    
T  38317220 agccattctctttataactttatct 38317196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 88 - 397
Target Start/End: Complemental strand, 38326349 - 38326041
Alignment:
Q  88 ccgtcagataaagagtttaacttctcttgaaatggcatgctagaagattggtcctggataattctttgcacgcaagaaggagtacttttgctagaatact 187  Q
    |||| ||||||||| ||  | |||| ||| |||| |||| | ||||||||| |||| | | ||||||||| || ||||| ||||| || |||||||||||    
T  38326349 ccgtgagataaagacttggagttcttttgcaatgacatggtcgaagattggccctgaacagttctttgcatgccagaagaagtacgttggctagaatact 38326250  T
Q  188 tgtcaaatagcatgtacaacttgctctttacttgctgcaacttcctttcgcaggttgatgcatcaagttttgagtaacaataagccaatgtggaaagctt 287  Q
    || |||||||||||||||||||  || ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||  ||    
T  38326249 tgccaaatagcatgtacaacttcgtccttacttgttgcaacttcctttcacaggttgatgcatcaagttttgagtaacaataagccaatgttgaaaattt 38326150  T
Q  288 tatccttgggtcaagaaccgctcccaatgcaagaacaacactatactcttcccaatatttctcaaactttggtcaacatcctttcaaccattctctttat 387  Q
     |||| |||||||||||||||||||||||||||||||||||| ||||| | |||| |||| |||||| ||| ||| |||||||||| |||||||||||||    
T  38326149 aatccgtgggtcaagaaccgctcccaatgcaagaacaacactgtactcattccaaaatttgtcaaac-ttgctcatcatcctttcagccattctctttat 38326051  T
Q  388 atcttcatct 397  Q
    | ||||||||    
T  38326050 aacttcatct 38326041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 109 - 356
Target Start/End: Complemental strand, 38314072 - 38313827
Alignment:
Q  109 ttctcttgaaatggcatgctagaagattggtcctggataattctttgcacgcaagaaggagtacttttgctagaatacttgtcaaatagcatgtacaact 208  Q
    |||| ||| ||||||||| ||||||||||| |||  ||| || ||||||| | ||||| ||||||||||||||| |||||| ||||||||||||||||||    
T  38314072 ttcttttgcaatggcatggtagaagattggccctaaatagttgtttgcaccctagaagaagtacttttgctagagtacttggcaaatagcatgtacaact 38313973  T
Q  209 tgctctttacttgctgcaacttcctttcgcaggttgatgcatcaagttttgagtaacaataagccaatgtggaaagctttatccttgggtcaagaaccgc 308  Q
    |  |||||||||  |||||||||| ||| || ||||||| ||| |||||||||||||||  ||||||| | ||||  || |||| |||||||||||| ||    
T  38313972 ttgtctttactttttgcaacttccgttcacaagttgatggatctagttttgagtaacaagcagccaatcttgaaaatttcatccgtgggtcaagaactgc 38313873  T
Q  309 tcccaatgcaagaacaacactatactcttcccaatatttctcaaactt 356  Q
    ||||| ||||||||||||||  ||||| ||||||||||||| ||||||    
T  38313872 tcccattgcaagaacaacac--tactcatcccaatatttcttaaactt 38313827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 73 - 275
Target Start/End: Complemental strand, 38306766 - 38306564
Alignment:
Q  73 cttacatcaaataggccgtcagataaagagtttaacttctcttgaaatggcatgctagaagattggtcctggataattctttgcacgcaagaaggagtac 172  Q
    ||||||||||||||||| | ||||||||| |   | |||| ||| ||||||||| ||||||||||| |||| | | || ||||||  | ||||| |||||    
T  38306766 cttacatcaaataggccatgagataaagactcagagttcttttgcaatggcatggtagaagattggccctgaacagttgtttgcataccagaagaagtac 38306667  T
Q  173 ttttgctagaatacttgtcaaatagcatgtacaacttgctctttacttgctgcaacttcctttcgcaggttgatgcatcaagttttgagtaacaataagc 272  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||  |||||||||| ||| || ||||||| ||| |||||||||||||||| |||    
T  38306666 ttttgctagaatacttgtcaaatagcatgtacaactttgtctttactttttgcaacttccgttcacaagttgatggatcgagttttgagtaacaatcagc 38306567  T
Q  273 caa 275  Q
    |||    
T  38306566 caa 38306564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 397
Target Start/End: Complemental strand, 38306536 - 38306455
Alignment:
Q  315 tgcaagaacaacactatactcttcccaatatttctcaaactttggtcaacatcctttcaaccattctctttatatcttcatct 397  Q
    ||||||||||||||||| ||| ||||||||||||| |||| |||  || |||||||| | ||||||||  |||| ||||||||    
T  38306536 tgcaagaacaacactatgctcatcccaatatttcttaaac-ttgcccatcatccttttagccattctcgctataacttcatct 38306455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 150; Significance: 3e-79; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 73 - 397
Target Start/End: Original strand, 38849817 - 38850149
Alignment:
Q  73 cttacatcaaataggccgtcagataaagagtttaacttctcttgaaatggcatgctagaagattggtcctgg---------ataattctttgcacgcaag 163  Q
    ||||||||||||||||| | ||||||||| ||||| |||| ||| ||||||||||||||||||||||||||          ||| ||||||| || | ||    
T  38849817 cttacatcaaataggccatgagataaagactttaatttcttttgtaatggcatgctagaagattggtcctgattctccttaatagttctttgaaccccag 38849916  T
Q  164 aaggagtacttttgctagaatacttgtcaaatagcatgtacaacttgctctttacttgctgcaacttcctttcgcaggttgatgcatcaagttttgagta 263  Q
     || ||| || |||| ||||| ||| |||||||||||| ||||||| |||||||||||||| | ||||||||| |||||||||||||| |||||||| ||    
T  38849917 cagtagtgctgttgccagaatgcttctcaaatagcatgcacaactttctctttacttgctgtagcttcctttcacaggttgatgcatccagttttgaata 38850016  T
Q  264 acaataagccaatgtggaaagctttatccttgggtcaagaaccgctcccaatgcaagaacaacactatactcttcccaatatttctcaaactttggtcaa 363  Q
    |||||||||||| || | || ||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||     
T  38850017 acaataagccaaggttgtaaacttcatccgtgggtcaagaaccgctcccaatgcaagaacaacactatactcatcccaatatttctcaaac-ttgctcat 38850115  T
Q  364 catcctttcaaccattctctttatatcttcatct 397  Q
    |||||||||| ||||| |||||||||||||||||    
T  38850116 catcctttcagccattttctttatatcttcatct 38850149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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