View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11473_low_11 (Length: 397)
Name: NF11473_low_11
Description: NF11473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11473_low_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 11 - 381
Target Start/End: Complemental strand, 47134364 - 47133993
Alignment:
| Q |
11 |
atgaaattcaaaatcatttaacaacagaaaacctattaatttaaaatctcaaatattcatgnnnnnnnnnnnnnnnncttcaa---gttgaaggtatttc |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
47134364 |
atgaaattcaaaatcatttaacaacagaaaacctattcatttaaaatctcaaatattcatgaaaataaaataaaaaacttcaaaaagttgaaggtatttc |
47134265 |
T |
|
| Q |
108 |
tccctagttgtcaaattatagcagtctaataatgaccaagaccaatatatggt--atggctcctaggattttaaaaaactatatccacgtggtccacgga |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47134264 |
tccctagttgtcaaattatagcagtctaataatgaccaagaccaatatatggttcatagctcctaggattttaaaaaactatatccacgtggtccacgga |
47134165 |
T |
|
| Q |
206 |
ccccacaacaacaaagtgttattannnnnnnatttctttaaattgtaagtagtatttacatattgatttgcttggaaaactcccatggactaaagtctaa |
305 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47134164 |
ccccacaacaacaaagtgttattatttttttatttctttaaattgta----gtatttacatattgatttgcttggaaaactcccatggactaaagtctaa |
47134069 |
T |
|
| Q |
306 |
aactatgtttgcttcaatatatagtgatcagataaggaatcacagacaggttgaatgtcaattcgtgtatagctat |
381 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47134068 |
aactatgtttgcttcaatatatagtgatcagataaggaatcacagacaggttgaatgtcaattcgtgtatagctat |
47133993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University