View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11473_low_12 (Length: 393)

Name: NF11473_low_12
Description: NF11473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11473_low_12
NF11473_low_12
[»] chr8 (2 HSPs)
chr8 (1-335)||(43868656-43868991)
chr8 (332-377)||(43869007-43869052)
[»] chr6 (1 HSPs)
chr6 (3-59)||(21188355-21188411)
[»] chr1 (1 HSPs)
chr1 (250-299)||(42258914-42258963)
[»] scaffold0055 (7 HSPs)
scaffold0055 (263-305)||(17964-18006)
scaffold0055 (263-305)||(20680-20722)
scaffold0055 (263-305)||(23919-23961)
scaffold0055 (263-305)||(29276-29318)
scaffold0055 (263-305)||(37152-37194)
scaffold0055 (263-305)||(45001-45043)
scaffold0055 (263-305)||(57726-57768)
[»] scaffold0052 (7 HSPs)
scaffold0052 (263-305)||(8908-8950)
scaffold0052 (263-305)||(12110-12152)
scaffold0052 (263-305)||(16569-16611)
scaffold0052 (263-305)||(20923-20965)
scaffold0052 (263-305)||(39863-39905)
scaffold0052 (263-305)||(55330-55372)
scaffold0052 (263-305)||(66747-66789)
[»] chr4 (1 HSPs)
chr4 (275-305)||(25744466-25744496)
[»] scaffold0515 (1 HSPs)
scaffold0515 (265-305)||(10117-10157)
[»] scaffold0152 (2 HSPs)
scaffold0152 (265-305)||(27737-27777)
scaffold0152 (265-305)||(36513-36553)


Alignment Details
Target: chr8 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 335
Target Start/End: Original strand, 43868656 - 43868991
Alignment:
Q  1 atttttgagactaaactatgaagaggttattactgaatggagcaggcaaggttctccttctccatggactactgcaaaccctcctaagttcaattgtgat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43868656 atttttgagactaaactatgaagaggttattactgaatggagcaggcaaggttctccttctccatggactactgcaaaccctcctaagttcaattgtgat 43868755  T
Q  101 gatgattcatggcaaaacttattggtacttcaacttttcannnnnnnnn-caatcatctcttttacactatactaaagaagacattaaattagcaacaaa 199  Q
    ||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  43868756 gatgattcatggcaaaacttattggtacttcaacttttcattttttttctcaatcatctcttttacactatactaaacaagacattaaattagcaacaaa 43868855  T
Q  200 aatttagcgataacataatttagatattttattttttccatatgtaattgaaacgactaggtttgaatctcagtagatcgtggcagcaaggtcactctac 299  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  43868856 aatttagtgataacataatttagatattttattttttccatatgtaattgaaacgactagggttgaatctcagtagatcgtggcagcaaggtcactctac 43868955  T
Q  300 cacttagttgtaatttaatacatgtatatgatattt 335  Q
    ||||||||||||||||||||||||||||||||||||    
T  43868956 cacttagttgtaatttaatacatgtatatgatattt 43868991  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 332 - 377
Target Start/End: Original strand, 43869007 - 43869052
Alignment:
Q  332 atttcagggttcaagtggtgtagaaggagaagtaagaagcttaagg 377  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  43869007 atttcagggttcaagtggtgtagaaggagaagtaagaagcttaagg 43869052  T

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Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 21188411 - 21188355
Alignment:
Q  3 ttttgagactaaactatgaagaggttattactgaatggagcaggcaaggttctcctt 59  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21188411 ttttgagactaaactatgaagaggttattactgaatggagcaggcaaggttctcctt 21188355  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 250 - 299
Target Start/End: Complemental strand, 42258963 - 42258914
Alignment:
Q  250 aaacgactaggtttgaatctcagtagatcgtggcagcaaggtcactctac 299  Q
    ||||||| ||| |||||||||||| |||||||||||||||| ||||||||    
T  42258963 aaacgacaagggttgaatctcagtggatcgtggcagcaaggccactctac 42258914  T

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Target: scaffold0055 (Bit Score: 31; Significance: 0.00000003; HSPs: 7)
Name: scaffold0055
Description:

Target: scaffold0055; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 305
Target Start/End: Complemental strand, 18006 - 17964
Alignment:
Q  263 tgaatctcagtagatcgtggcagcaaggtcactctaccactta 305  Q
    ||||||||||| |||||||||||||||| |||||| |||||||    
T  18006 tgaatctcagtggatcgtggcagcaaggccactctgccactta 17964  T

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Target: scaffold0055; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 305
Target Start/End: Original strand, 20680 - 20722
Alignment:
Q  263 tgaatctcagtagatcgtggcagcaaggtcactctaccactta 305  Q
    ||||||||||| |||||||||||||||| |||||| |||||||    
T  20680 tgaatctcagtggatcgtggcagcaaggccactctgccactta 20722  T

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Target: scaffold0055; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 305
Target Start/End: Original strand, 23919 - 23961
Alignment:
Q  263 tgaatctcagtagatcgtggcagcaaggtcactctaccactta 305  Q
    ||||||||||| |||||||||||||||| |||||| |||||||    
T  23919 tgaatctcagtggatcgtggcagcaaggccactctgccactta 23961  T

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Target: scaffold0055; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 305
Target Start/End: Complemental strand, 29318 - 29276
Alignment:
Q  263 tgaatctcagtagatcgtggcagcaaggtcactctaccactta 305  Q
    ||||||||||| |||||||||||||||| |||||| |||||||    
T  29318 tgaatctcagtggatcgtggcagcaaggccactctgccactta 29276  T

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Target: scaffold0055; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 305
Target Start/End: Original strand, 37152 - 37194
Alignment:
Q  263 tgaatctcagtagatcgtggcagcaaggtcactctaccactta 305  Q
    ||||||||||| |||||||||||||||| |||||| |||||||    
T  37152 tgaatctcagtggatcgtggcagcaaggccactctgccactta 37194  T

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Target: scaffold0055; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 305
Target Start/End: Original strand, 45001 - 45043
Alignment:
Q  263 tgaatctcagtagatcgtggcagcaaggtcactctaccactta 305  Q
    ||||||||||| |||||||||||||||| |||||| |||||||    
T  45001 tgaatctcagtggatcgtggcagcaaggccactctgccactta 45043  T

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Target: scaffold0055; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 305
Target Start/End: Original strand, 57726 - 57768
Alignment:
Q  263 tgaatctcagtagatcgtggcagcaaggtcactctaccactta 305  Q
    ||||||||||| |||||||||||||||| |||||| |||||||    
T  57726 tgaatctcagtggatcgtggcagcaaggccactctgccactta 57768  T

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Target: scaffold0052 (Bit Score: 31; Significance: 0.00000003; HSPs: 7)
Name: scaffold0052
Description:

Target: scaffold0052; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 305
Target Start/End: Original strand, 8908 - 8950
Alignment:
Q  263 tgaatctcagtagatcgtggcagcaaggtcactctaccactta 305  Q
    ||||||||||| |||||||||||||||| |||||| |||||||    
T  8908 tgaatctcagtggatcgtggcagcaaggccactctgccactta 8950  T

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Target: scaffold0052; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 305
Target Start/End: Original strand, 12110 - 12152
Alignment:
Q  263 tgaatctcagtagatcgtggcagcaaggtcactctaccactta 305  Q
    ||||||||||| |||||||||||||||| |||||| |||||||    
T  12110 tgaatctcagtggatcgtggcagcaaggccactctgccactta 12152  T

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Target: scaffold0052; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 305
Target Start/End: Complemental strand, 16611 - 16569
Alignment:
Q  263 tgaatctcagtagatcgtggcagcaaggtcactctaccactta 305  Q
    ||||||||||| |||||||||||||||| |||||| |||||||    
T  16611 tgaatctcagtggatcgtggcagcaaggccactctgccactta 16569  T

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Target: scaffold0052; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 305
Target Start/End: Original strand, 20923 - 20965
Alignment:
Q  263 tgaatctcagtagatcgtggcagcaaggtcactctaccactta 305  Q
    ||||||||||| |||||||||||||||| |||||| |||||||    
T  20923 tgaatctcagtggatcgtggcagcaaggccactctgccactta 20965  T

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Target: scaffold0052; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 305
Target Start/End: Complemental strand, 39905 - 39863
Alignment:
Q  263 tgaatctcagtagatcgtggcagcaaggtcactctaccactta 305  Q
    ||||||||||| |||||||||||||||| |||||| |||||||    
T  39905 tgaatctcagtggatcgtggcagcaaggccactctgccactta 39863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 305
Target Start/End: Original strand, 55330 - 55372
Alignment:
Q  263 tgaatctcagtagatcgtggcagcaaggtcactctaccactta 305  Q
    ||||||||||| |||||||||||||||| |||||| |||||||    
T  55330 tgaatctcagtggatcgtggcagcaaggccactctgccactta 55372  T

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Target: scaffold0052; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 305
Target Start/End: Original strand, 66747 - 66789
Alignment:
Q  263 tgaatctcagtagatcgtggcagcaaggtcactctaccactta 305  Q
    ||||||||||| |||||||||||||||| |||||| |||||||    
T  66747 tgaatctcagtggatcgtggcagcaaggccactctgccactta 66789  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 305
Target Start/End: Complemental strand, 25744496 - 25744466
Alignment:
Q  275 gatcgtggcagcaaggtcactctaccactta 305  Q
    |||||||||||||||||||||||||||||||    
T  25744496 gatcgtggcagcaaggtcactctaccactta 25744466  T

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Target: scaffold0515 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0515
Description:

Target: scaffold0515; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 305
Target Start/End: Complemental strand, 10157 - 10117
Alignment:
Q  265 aatctcagtagatcgtggcagcaaggtcactctaccactta 305  Q
    ||||||||| |||||||||||||||| |||||| |||||||    
T  10157 aatctcagtggatcgtggcagcaaggccactctgccactta 10117  T

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Target: scaffold0152 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 305
Target Start/End: Complemental strand, 27777 - 27737
Alignment:
Q  265 aatctcagtagatcgtggcagcaaggtcactctaccactta 305  Q
    ||||||||| |||||||||||||||| |||||| |||||||    
T  27777 aatctcagtggatcgtggcagcaaggccactctgccactta 27737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 305
Target Start/End: Complemental strand, 36553 - 36513
Alignment:
Q  265 aatctcagtagatcgtggcagcaaggtcactctaccactta 305  Q
    ||||||||| |||||||||||||||| |||||| |||||||    
T  36553 aatctcagtggatcgtggcagcaaggccactctgccactta 36513  T

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