View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11473_low_13 (Length: 392)
Name: NF11473_low_13
Description: NF11473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11473_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 24309531 - 24309829
Alignment:
| Q |
1 |
atctggatggactacgtatattggttctccaataaatcatgaagatgtaaattttgatcatgattataaagataacaataaagtgcattattatcaagag |
100 |
Q |
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|||||||||||| | ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
24309531 |
atctggatggaccatgtatattggttctccaataaatcatgaggatgaaaattttgatcatgattataaagataataataaagtgcattattatcaagag |
24309630 |
T |
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| Q |
101 |
attcataaaactcaagttgatgctggaattgaaagtgatgattctatggcttctgatgcttcttctggaccaagtcatcatcatgctgttaattttcatc |
200 |
Q |
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|||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24309631 |
attcatcaaactcaagttgatgctgaaattgaaagtgatgattctatggcttctgatgcttcttctggaccaagtcatcatcatgctgttaattttcatc |
24309730 |
T |
|
| Q |
201 |
atcccttgggaatttatgaaggtggctatgatttgagacatttcaagaaaaatgtggaagagggtgacaaggtttatgagtactattgctttgatcatc |
299 |
Q |
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| T |
24309731 |
atcccttgggaatttatgaaggtggctatgatttgagacatttcaagaaaaatgtggaagagggtgacaaggtttatgagtactattgctttgatcatc |
24309829 |
T |
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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 130 - 185
Target Start/End: Complemental strand, 45887731 - 45887676
Alignment:
| Q |
130 |
tgaaagtgatgattctatggcttctgatgcttcttctggaccaagtcatcatcatg |
185 |
Q |
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|||||||||||||||||||| |||||||||||||||||| |||| |||||| |||| |
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| T |
45887731 |
tgaaagtgatgattctatggtttctgatgcttcttctgggccaattcatcaacatg |
45887676 |
T |
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