View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11473_low_15 (Length: 381)

Name: NF11473_low_15
Description: NF11473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11473_low_15
NF11473_low_15
[»] chr5 (21 HSPs)
chr5 (151-366)||(14387118-14387339)
chr5 (15-152)||(12806993-12807130)
chr5 (5-155)||(10285187-10285337)
chr5 (8-152)||(25773649-25773793)
chr5 (5-152)||(30720622-30720769)
chr5 (5-152)||(36561229-36561376)
chr5 (5-152)||(40886740-40886887)
chr5 (15-153)||(37900764-37900902)
chr5 (15-141)||(7277562-7277688)
chr5 (15-114)||(25683368-25683467)
chr5 (18-153)||(16983257-16983393)
chr5 (27-102)||(23098386-23098461)
chr5 (15-104)||(30403101-30403191)
chr5 (15-154)||(734478-734616)
chr5 (15-154)||(11319557-11319696)
chr5 (15-153)||(39070882-39071020)
chr5 (103-152)||(15305216-15305265)
chr5 (15-93)||(16054173-16054249)
chr5 (15-92)||(1056422-1056498)
chr5 (44-154)||(11796449-11796559)
chr5 (111-153)||(15304821-15304863)
[»] chr7 (16 HSPs)
chr7 (5-153)||(10981507-10981655)
chr7 (5-154)||(27813809-27813958)
chr7 (5-152)||(40348960-40349107)
chr7 (5-150)||(36453254-36453399)
chr7 (15-152)||(47110451-47110586)
chr7 (5-152)||(25614483-25614628)
chr7 (6-104)||(3091565-3091663)
chr7 (12-102)||(16662146-16662234)
chr7 (12-102)||(17636506-17636594)
chr7 (15-92)||(27942179-27942256)
chr7 (23-94)||(16360442-16360511)
chr7 (99-154)||(25060133-25060188)
chr7 (20-104)||(7743542-7743625)
chr7 (15-94)||(3498894-3498973)
chr7 (99-153)||(2911548-2911602)
chr7 (15-102)||(37983206-37983289)
[»] chr2 (17 HSPs)
chr2 (5-152)||(1102503-1102650)
chr2 (15-154)||(3518906-3519045)
chr2 (5-152)||(39938170-39938317)
chr2 (5-151)||(23366790-23366936)
chr2 (15-153)||(12969879-12970017)
chr2 (25-152)||(37673887-37674014)
chr2 (5-124)||(1646317-1646434)
chr2 (15-75)||(22388275-22388335)
chr2 (30-104)||(35179090-35179164)
chr2 (99-152)||(34224378-34224431)
chr2 (15-104)||(18078104-18078193)
chr2 (15-104)||(19976380-19976468)
chr2 (15-93)||(14779838-14779914)
chr2 (15-101)||(32840312-32840401)
chr2 (25-94)||(39562037-39562104)
chr2 (20-89)||(34242040-34242107)
chr2 (124-152)||(8042022-8042050)
[»] chr3 (34 HSPs)
chr3 (5-154)||(3383074-3383223)
chr3 (5-153)||(13364842-13364990)
chr3 (8-153)||(29375137-29375282)
chr3 (5-152)||(198855-199002)
chr3 (5-152)||(23088061-23088208)
chr3 (5-152)||(46694240-46694387)
chr3 (17-153)||(19241810-19241946)
chr3 (5-152)||(36881282-36881427)
chr3 (15-153)||(43750136-43750274)
chr3 (48-145)||(32835129-32835226)
chr3 (31-153)||(13702768-13702890)
chr3 (74-157)||(27707363-27707446)
chr3 (20-93)||(37780996-37781069)
chr3 (99-153)||(12094581-12094635)
chr3 (15-100)||(19897067-19897152)
chr3 (99-153)||(44277455-44277509)
chr3 (24-101)||(1455297-1455374)
chr3 (99-152)||(19911509-19911562)
chr3 (67-154)||(37293435-37293522)
chr3 (6-64)||(27707119-27707177)
chr3 (111-152)||(12095423-12095464)
chr3 (99-152)||(38805245-38805298)
chr3 (67-124)||(48820444-48820501)
chr3 (111-155)||(19912174-19912218)
chr3 (111-155)||(38806341-38806385)
chr3 (24-102)||(44522491-44522567)
chr3 (83-153)||(48963155-48963223)
chr3 (15-102)||(53559750-53559837)
chr3 (15-93)||(24064283-24064361)
chr3 (5-104)||(26105079-26105178)
chr3 (15-93)||(52805166-52805244)
chr3 (15-129)||(54086577-54086690)
chr3 (111-152)||(44276775-44276816)
chr3 (124-156)||(27010708-27010740)
[»] chr6 (22 HSPs)
chr6 (5-153)||(29260191-29260339)
chr6 (5-152)||(8626482-8626629)
chr6 (15-153)||(1605578-1605716)
chr6 (5-145)||(30734613-30734753)
chr6 (15-153)||(13757207-13757345)
chr6 (15-153)||(7761300-7761436)
chr6 (15-155)||(15064834-15064974)
chr6 (5-137)||(31559866-31559998)
chr6 (5-159)||(17942436-17942592)
chr6 (5-152)||(4129435-4129574)
chr6 (15-152)||(8235624-8235761)
chr6 (36-146)||(30734771-30734879)
chr6 (15-103)||(14287038-14287125)
chr6 (99-154)||(19996715-19996770)
chr6 (22-104)||(3798151-3798233)
chr6 (15-101)||(21277574-21277659)
chr6 (20-101)||(11370630-11370711)
chr6 (111-153)||(19996321-19996363)
chr6 (114-155)||(15064692-15064733)
chr6 (15-102)||(26860819-26860902)
chr6 (61-94)||(33845469-33845502)
chr6 (6-102)||(1814645-1814741)
[»] chr4 (27 HSPs)
chr4 (5-153)||(40122615-40122763)
chr4 (6-153)||(21310424-21310571)
chr4 (5-155)||(24706377-24706527)
chr4 (15-153)||(25704650-25704788)
chr4 (5-154)||(21661665-21661814)
chr4 (5-154)||(21670429-21670578)
chr4 (5-153)||(14261043-14261191)
chr4 (15-159)||(22321407-22321551)
chr4 (15-153)||(12071560-12071698)
chr4 (15-152)||(34324722-34324860)
chr4 (5-153)||(44568836-44568984)
chr4 (5-157)||(50767859-50768011)
chr4 (15-152)||(20249153-20249289)
chr4 (6-150)||(31892240-31892380)
chr4 (36-155)||(1988033-1988151)
chr4 (15-104)||(20714488-20714577)
chr4 (15-101)||(32543532-32543617)
chr4 (20-102)||(6129093-6129175)
chr4 (15-155)||(19692720-19692860)
chr4 (15-155)||(19703305-19703445)
chr4 (5-84)||(18507394-18507472)
chr4 (23-152)||(26676714-26676843)
chr4 (37-92)||(34284179-34284234)
chr4 (15-80)||(21064834-21064897)
chr4 (67-104)||(48652268-48652305)
chr4 (15-55)||(51777715-51777755)
chr4 (99-137)||(19361662-19361700)
[»] chr1 (38 HSPs)
chr1 (5-152)||(23045409-23045556)
chr1 (5-152)||(284333-284480)
chr1 (5-153)||(40783787-40783935)
chr1 (15-152)||(321626-321763)
chr1 (15-152)||(24772045-24772182)
chr1 (15-151)||(27211104-27211240)
chr1 (15-153)||(23526239-23526377)
chr1 (15-155)||(46771634-46771774)
chr1 (5-152)||(47037982-47038127)
chr1 (15-130)||(33082767-33082882)
chr1 (15-137)||(52037262-52037382)
chr1 (5-102)||(1749357-1749454)
chr1 (24-101)||(1837978-1838053)
chr1 (18-93)||(7765072-7765147)
chr1 (99-154)||(9588668-9588723)
chr1 (15-104)||(31003926-31004012)
chr1 (30-104)||(3657125-3657199)
chr1 (99-153)||(3943059-3943113)
chr1 (99-152)||(41959078-41959131)
chr1 (15-93)||(18396754-18396832)
chr1 (23-104)||(40261419-40261501)
chr1 (15-152)||(51064893-51065033)
chr1 (15-104)||(52478016-52478103)
chr1 (99-152)||(13984991-13985044)
chr1 (15-84)||(31061594-31061662)
chr1 (27-92)||(40562733-40562797)
chr1 (86-138)||(40564241-40564293)
chr1 (111-154)||(44227846-44227889)
chr1 (15-102)||(27143151-27143239)
chr1 (111-154)||(41959809-41959852)
chr1 (99-153)||(44228228-44228282)
chr1 (111-152)||(3943763-3943804)
chr1 (69-104)||(14351954-14351989)
chr1 (15-84)||(24876633-24876699)
chr1 (111-153)||(9589631-9589673)
chr1 (15-104)||(34458863-34458950)
chr1 (15-60)||(37926900-37926945)
chr1 (124-156)||(36399332-36399364)
[»] chr8 (32 HSPs)
chr8 (5-155)||(40058433-40058583)
chr8 (15-154)||(2540071-2540210)
chr8 (5-152)||(11174353-11174500)
chr8 (17-152)||(3585451-3585586)
chr8 (17-153)||(11646467-11646603)
chr8 (5-152)||(43275529-43275674)
chr8 (5-152)||(7146913-7147060)
chr8 (5-152)||(37345571-37345718)
chr8 (5-153)||(40918861-40919007)
chr8 (15-145)||(30999663-30999791)
chr8 (15-152)||(27034997-27035133)
chr8 (17-152)||(36068080-36068215)
chr8 (6-152)||(20546420-20546564)
chr8 (15-104)||(28326797-28326883)
chr8 (20-153)||(28562420-28562554)
chr8 (15-94)||(13881094-13881174)
chr8 (15-150)||(35866616-35866751)
chr8 (99-153)||(8697898-8697952)
chr8 (99-153)||(41307961-41308015)
chr8 (99-152)||(45278701-45278754)
chr8 (99-153)||(10646591-10646645)
chr8 (15-104)||(37510314-37510403)
chr8 (99-152)||(40486453-40486506)
chr8 (20-93)||(10181002-10181074)
chr8 (20-153)||(28567918-28568051)
chr8 (20-153)||(28575511-28575644)
chr8 (15-102)||(30906828-30906917)
chr8 (111-157)||(41305757-41305803)
chr8 (23-101)||(27563999-27564075)
chr8 (124-160)||(616775-616811)
chr8 (20-92)||(30268530-30268602)
chr8 (111-155)||(45278010-45278053)
[»] scaffold1431 (1 HSPs)
scaffold1431 (5-158)||(29-182)
[»] scaffold0054 (1 HSPs)
scaffold0054 (15-153)||(45453-45591)
[»] scaffold1770 (1 HSPs)
scaffold1770 (5-152)||(170-309)
[»] scaffold0155 (2 HSPs)
scaffold0155 (274-366)||(17742-17834)
scaffold0155 (159-265)||(17226-17326)
[»] scaffold0062 (1 HSPs)
scaffold0062 (5-137)||(395-525)
[»] scaffold0056 (1 HSPs)
scaffold0056 (15-102)||(70874-70961)
[»] scaffold0257 (2 HSPs)
scaffold0257 (99-152)||(23467-23520)
scaffold0257 (111-152)||(23872-23913)
[»] scaffold0025 (1 HSPs)
scaffold0025 (15-86)||(65303-65375)
[»] scaffold0076 (1 HSPs)
scaffold0076 (20-101)||(15465-15551)
[»] scaffold0321 (1 HSPs)
scaffold0321 (130-158)||(1623-1651)


Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-103; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 151 - 366
Target Start/End: Original strand, 14387118 - 14387339
Alignment:
Q  151 tatttattactagccacatgcatgtatatatattacta------tgactatgaccatgactatgtgtgtgagacttatcacgtgtcacatttaaattatt 244  Q
    ||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14387118 tatttattactagccacatgcatgtatatatattactatgactatgactatgaccatgactatgtgtgtgagacttatcacgtgtcacatttaaattatt 14387217  T
Q  245 tcagaatacttgattgattgagtacacatatgttattccaaaatcaagttgcacatgtgtatttgacattattattagaaattgaataaagttaaataaa 344  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  14387218 tcagaatacttgattgattgagtacacacatgttattccaaaatcaagttgcacatgtgtatttgacattattattagaagttgaataaagttaaataaa 14387317  T
Q  345 gtttcattgtactgtaatgtat 366  Q
    ||||||||||||||||||||||    
T  14387318 gtttcattgtactgtaatgtat 14387339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 15 - 152
Target Start/End: Original strand, 12806993 - 12807130
Alignment:
Q  15 aataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttaatgcaatt 114  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12806993 aataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttaatgcaatt 12807092  T
Q  115 tctccaaaatggacatatattttgaaacggagggagta 152  Q
    |||||||||||||||| |||||||||||||||||||||    
T  12807093 tctccaaaatggacatgtattttgaaacggagggagta 12807130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 5 - 155
Target Start/End: Original strand, 10285187 - 10285337
Alignment:
Q  5 gagagagaagaataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 104  Q
    |||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  10285187 gagagaaaaaaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttagtttcttggt 10285286  T
Q  105 taatgcaatttctccaaaatggacatatattttgaaacggagggagtattt 155  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  10285287 taatgcaatttctccaaaatagacatctattttgaaacggagggagtattt 10285337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 8 - 152
Target Start/End: Complemental strand, 25773793 - 25773649
Alignment:
Q  8 agagaagaataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttaa 107  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||     
T  25773793 agagaaaaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttgatttcttggttag 25773694  T
Q  108 tgcaatttctccaaaatggacatatattttgaaacggagggagta 152  Q
    ||||||||||||||||||||||| |||||||||||||||||||||    
T  25773693 tgcaatttctccaaaatggacatgtattttgaaacggagggagta 25773649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 5 - 152
Target Start/End: Original strand, 30720622 - 30720769
Alignment:
Q  5 gagagagaagaataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 104  Q
    |||||| || ||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30720622 gagagaaaaaaataaaatgaaataatagatgattaagggtattataaaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 30720721  T
Q  105 taatgcaatttctccaaaatggacatatattttgaaacggagggagta 152  Q
    || ||||||||||||||||||||||| |||||||||||||||||||||    
T  30720722 tagtgcaatttctccaaaatggacatgtattttgaaacggagggagta 30720769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 5 - 152
Target Start/End: Original strand, 36561229 - 36561376
Alignment:
Q  5 gagagagaagaataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 104  Q
    |||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  36561229 gagagaaaaaaataaaatgaaataataaatggttaaaggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttgat 36561328  T
Q  105 taatgcaatttctccaaaatggacatatattttgaaacggagggagta 152  Q
    || |||||||| || ||||||||||| |||||||||||||| ||||||    
T  36561329 tactgcaatttttctaaaatggacatgtattttgaaacggatggagta 36561376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 5 - 152
Target Start/End: Original strand, 40886740 - 40886887
Alignment:
Q  5 gagagagaagaataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 104  Q
    |||||| || ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||    
T  40886740 gagagaaaaaaataaaatgaaataataaatgattaagggtattatagaaaatacacacatattttcatcaaaaataacaaaatttattcgatttcttggt 40886839  T
Q  105 taatgcaatttctccaaaatggacatatattttgaaacggagggagta 152  Q
    || |||||||||||||||||| |||| |||||||||||||| ||||||    
T  40886840 tagtgcaatttctccaaaatgaacatgtattttgaaacggatggagta 40886887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 15 - 153
Target Start/End: Original strand, 37900764 - 37900902
Alignment:
Q  15 aataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttaatgcaatt 114  Q
    |||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||| |||||||||||| |||||||    
T  37900764 aatagaatgaaataataaatggttaagggtattatagaaaacacacatataatttcatcaaaaatatcaaaatttatttagtttcttggttactgcaatt 37900863  T
Q  115 tctccaaaatggacatatattttgaaacggagggagtat 153  Q
    |||||||||||||  | ||||||||||||||||||||||    
T  37900864 tctccaaaatggatgtgtattttgaaacggagggagtat 37900902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 15 - 141
Target Start/End: Original strand, 7277562 - 7277688
Alignment:
Q  15 aataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttaatgcaatt 114  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||| | |||||    
T  7277562 aatataatgaaataataaatggttaaaggtattatagaaaacacacacataatttgatcaaaaataacaaaatttatttggtttattggttactccaatt 7277661  T
Q  115 tctccaaaatggacatatattttgaaa 141  Q
    |||||||||| ||||| ||||||||||    
T  7277662 tctccaaaatagacatgtattttgaaa 7277688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 15 - 114
Target Start/End: Original strand, 25683368 - 25683467
Alignment:
Q  15 aataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttaatgcaatt 114  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||    
T  25683368 aatagaataaaataataaatggttaagggtattatagaaaacacacacataattttatcaaaaataacaaaatttatttggtttcttggttattgcaatt 25683467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 18 - 153
Target Start/End: Complemental strand, 16983393 - 16983257
Alignment:
Q  18 aaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaat--ttatttggtttcttggttaatgcaattt 115  Q
    ||||| ||||||||| |||||||||||||| ||||||| ||||| ||  |||||||||||| || ||||   ||||||||||||||||||| ||||||||    
T  16983393 aaaataaaataataa-tggttaagggtattgtagaaaaaacacatatcatttcatcaaaaaaaaaaaaaaaattatttggtttcttggttactgcaattt 16983295  T
Q  116 ctccaaaatggacatatattttgaaacggagggagtat 153  Q
    ||||||||||||||| ||||||||||| ||||||||||    
T  16983294 ctccaaaatggacatgtattttgaaacagagggagtat 16983257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 27 - 102
Target Start/End: Original strand, 23098386 - 23098461
Alignment:
Q  27 taataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttg 102  Q
    ||||||||||||||||||||||||| |||||  |||||| ||||||||||||||||||||||||||| ||||||||    
T  23098386 taataaatggttaagggtattataggaaacatgcacataatttcatcaaaaataacaaaatttatttagtttcttg 23098461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 15 - 104
Target Start/End: Original strand, 30403101 - 30403191
Alignment:
Q  15 aataaaatgaaataataaatggttaagggtattatagaaaacaca-cacatattttcatcaaaaataacaaaatttatttggtttcttggt 104  Q
    ||||||||||||||| ||||| ||||| ||||||||||||| | | |||| | ||||||||||||||||||||||||||||||||||||||    
T  30403101 aataaaatgaaataacaaatgattaagagtattatagaaaaaaaaacacagaatttcatcaaaaataacaaaatttatttggtttcttggt 30403191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 154
Target Start/End: Original strand, 734478 - 734616
Alignment:
Q  15 aataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttaatgcaatt 114  Q
    |||| ||||||||||||||||  |||||||||||||||||| ||||| | | ||||||||| ||| |||||||||||||| ||  |||||    | ||||    
T  734478 aatagaatgaaataataaatgagtaagggtattatagaaaa-acacaaagaatttcatcaataatgacaaaatttatttgattctttggtatgagtaatt 734576  T
Q  115 tctccaaaatggacatatattttgaaacggagggagtatt 154  Q
    ||| |||||||||||  |||| ||||||||||||| ||||    
T  734577 tcttcaaaatggacaagtattgtgaaacggagggaatatt 734616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 154
Target Start/End: Complemental strand, 11319696 - 11319557
Alignment:
Q  15 aataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttaatgcaatt 114  Q
    |||| ||||||||||||||||  |||||||||||||||||| | ||| | | |||||| |||||| |||| ||||||||| ||  || ||   || ||||    
T  11319696 aatagaatgaaataataaatgagtaagggtattatagaaaaaaaacaaagaatttcataaaaaattacaacatttatttgattcattagtatgtgtaatt 11319597  T
Q  115 tctccaaaatggacatatattttgaaacggagggagtatt 154  Q
    ||| ||||||||||| ||||| ||||||||||| ||||||    
T  11319596 tcttcaaaatggacaaatattgtgaaacggaggaagtatt 11319557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 15 - 153
Target Start/End: Complemental strand, 39071020 - 39070882
Alignment:
Q  15 aataaaatgaaataataaatggttaagggtattatagaaaacacac-acatattttcatcaaaaataacaaaatttatttggtttcttggttaatgcaat 113  Q
    |||| ||||||||||||||||  |||||||||||||||||| |||| ||| | ||||||||||||| |||| ||||||||| || |||  |   || |||    
T  39071020 aatagaatgaaataataaatgagtaagggtattatagaaaaaacacaacaga-tttcatcaaaaatgacaacatttatttgattccttaatatgtgtaat 39070922  T
Q  114 ttctccaaaatggacatatattttgaaacggagggagtat 153  Q
    |||| ||||||| |||  |||| |||||||||||||||||    
T  39070921 ttcttcaaaatgaacaagtattgtgaaacggagggagtat 39070882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 103 - 152
Target Start/End: Original strand, 15305216 - 15305265
Alignment:
Q  103 gttaatgcaatttctccaaaatggacatatattttgaaacggagggagta 152  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  15305216 gttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 15305265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 93
Target Start/End: Complemental strand, 16054249 - 16054173
Alignment:
Q  15 aataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttattt 93  Q
    |||| ||| |||||||||||||| |||| |||||||||||  | ||||| | |||||| ||||||||||||||||||||    
T  16054249 aatagaataaaataataaatggtcaaggatattatagaaa--aaacacaaaatttcataaaaaataacaaaatttattt 16054173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 15 - 92
Target Start/End: Original strand, 1056422 - 1056498
Alignment:
Q  15 aataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatt 92  Q
    |||| |||||||||||||||| | ||  ||||||||||||| ||||| | | |||||| |||||||||||||||||||    
T  1056422 aatataatgaaataataaatgatcaatagtattatagaaaa-acacaaagaatttcattaaaaataacaaaatttatt 1056498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 154
Target Start/End: Complemental strand, 11796559 - 11796449
Alignment:
Q  44 tattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttaatgcaatttctccaaaatggacatatattttgaaacg 143  Q
    |||||||||| | ||||| | | |||||||||||||||||||||| ||||  |||||||||   || ||||||| |||||  ||||  || | ||||| |    
T  11796559 tattatagaacaaacacatagaatttcatcaaaaataacaaaattaatttaatttcttggtatctgtaatttcttcaaaaatgacaagtagtgtgaaaag 11796460  T
Q  144 gagggagtatt 154  Q
    |||||||||||    
T  11796459 gagggagtatt 11796449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 153
Target Start/End: Complemental strand, 15304863 - 15304821
Alignment:
Q  111 aatttctccaaaatggacatatattttgaaacggagggagtat 153  Q
    |||||||| ||||||||||| |||||| |||||||||||||||    
T  15304863 aatttctctaaaatggacatgtattttaaaacggagggagtat 15304821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 133; Significance: 5e-69; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 5 - 153
Target Start/End: Complemental strand, 10981655 - 10981507
Alignment:
Q  5 gagagagaagaataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 104  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10981655 gagagagaaaaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 10981556  T
Q  105 taatgcaatttctccaaaatggacatatattttgaaacggagggagtat 153  Q
    || ||||||||||||||||||||||| ||||||||||||||||||||||    
T  10981555 tagtgcaatttctccaaaatggacatgtattttgaaacggagggagtat 10981507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 5 - 154
Target Start/End: Complemental strand, 27813958 - 27813809
Alignment:
Q  5 gagagagaagaataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 104  Q
    |||||| || ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  27813958 gagagaaaaaaataaaatgaaataataaatgattaagggtattatagaaaacacatacatattttcatcaaaaataacaaaatttatttggtttcttggt 27813859  T
Q  105 taatgcaatttctccaaaatggacatatattttgaaacggagggagtatt 154  Q
    || ||||||||||||||||||||||| |||||||||||||||||||||||    
T  27813858 tagtgcaatttctccaaaatggacatgtattttgaaacggagggagtatt 27813809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 5 - 152
Target Start/End: Complemental strand, 40349107 - 40348960
Alignment:
Q  5 gagagagaagaataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 104  Q
    ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  40349107 gagagagaaaaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttgatttcttggt 40349008  T
Q  105 taatgcaatttctccaaaatggacatatattttgaaacggagggagta 152  Q
    || ||||||||||||||||||||||| |||||||||||||| ||||||    
T  40349007 tagtgcaatttctccaaaatggacatgtattttgaaacggaaggagta 40348960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 5 - 150
Target Start/End: Original strand, 36453254 - 36453399
Alignment:
Q  5 gagagagaagaataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 104  Q
    |||||| || ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  36453254 gagagaaaaaaataaaatgaaataataaatgattaagggtattatagaaaaaacacacatattttcatcaaaaataataaaatttatttggtttcttggt 36453353  T
Q  105 taatgcaatttctccaaaatggacatatattttgaaacggagggag 150  Q
    || ||||||||||||||||||||||| |||||||||||||||||||    
T  36453354 tagtgcaatttctccaaaatggacatgtattttgaaacggagggag 36453399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 15 - 152
Target Start/End: Complemental strand, 47110586 - 47110451
Alignment:
Q  15 aataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttaatgcaatt 114  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||  |||||||||||||||||||||||||||||| |||||||||||| |||||||    
T  47110586 aataaaataaaataataaatgattaagggtattatagaaaacacaca--tattttcatcaaaaataacaaaatttattttgtttcttggttagtgcaatt 47110489  T
Q  115 tctccaaaatggacatatattttgaaacggagggagta 152  Q
    |||||||||||||||| |||||||||| ||||||||||    
T  47110488 tctccaaaatggacatgtattttgaaatggagggagta 47110451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 5 - 152
Target Start/End: Original strand, 25614483 - 25614628
Alignment:
Q  5 gagagagaagaataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 104  Q
    |||||| || ||||||||||||||||||||| |||||||||||  |||||||||  |||||||||||||||||||||||||||||||||||||| |||||    
T  25614483 gagagaaaaaaataaaatgaaataataaatgattaagggtatttcagaaaacac--acatattttcatcaaaaataacaaaatttatttggttttttggt 25614580  T
Q  105 taatgcaatttctccaaaatggacatatattttgaaacggagggagta 152  Q
    || ||||||||||||||||||||||| |||||||||||||| ||||||    
T  25614581 tagtgcaatttctccaaaatggacatgtattttgaaacggaaggagta 25614628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 6 - 104
Target Start/End: Complemental strand, 3091663 - 3091565
Alignment:
Q  6 agagagaagaataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 104  Q
    ||||||||  ||| |||||||||||||||||||||||||||||||||||| ||||| | | |||||||||||||||||||||||||||| ||| |||||    
T  3091663 agagagaaatatagaatgaaataataaatggttaagggtattatagaaaaaacacaaagaatttcatcaaaaataacaaaatttatttgattttttggt 3091565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 12 - 102
Target Start/End: Complemental strand, 16662234 - 16662146
Alignment:
Q  12 aagaataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttg 102  Q
    ||||||| ||| ||||||||||||||||||||||||||  |||| | ||||| |||||||||||||||||||||||||||||  |||||||    
T  16662234 aagaatataataaaataataaatggttaagggtattat--aaaaaaaacacaaattttcatcaaaaataacaaaatttattttatttcttg 16662146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 12 - 102
Target Start/End: Complemental strand, 17636594 - 17636506
Alignment:
Q  12 aagaataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttg 102  Q
    ||||||| ||| ||||||||||||||||||||||||||  |||| | ||||| |||||||||||||||||||||||||||||  |||||||    
T  17636594 aagaatataataaaataataaatggttaagggtattat--aaaaaaaacacaaattttcatcaaaaataacaaaatttattttatttcttg 17636506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 15 - 92
Target Start/End: Original strand, 27942179 - 27942256
Alignment:
Q  15 aataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatt 92  Q
    |||| ||||||||||||||||||||| |||||||||||||| ||||||||| | |||| |||||||| ||||||||||    
T  27942179 aatagaatgaaataataaatggttaaaggtattatagaaaaaacacacataatctcattaaaaataaaaaaatttatt 27942256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 23 - 94
Target Start/End: Complemental strand, 16360511 - 16360442
Alignment:
Q  23 gaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttg 94  Q
    ||||||||||||||||||||||||||||||||  | ||||| | ||||||||||||||||||||||||||||    
T  16360511 gaaataataaatggttaagggtattatagaaa--aaacacagaatttcatcaaaaataacaaaatttatttg 16360442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 99 - 154
Target Start/End: Original strand, 25060133 - 25060188
Alignment:
Q  99 cttggttaatgcaatttctccaaaatggacatatattttgaaacggagggagtatt 154  Q
    |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||    
T  25060133 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagtatt 25060188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 104
Target Start/End: Original strand, 7743542 - 7743625
Alignment:
Q  20 aatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 104  Q
    |||||||||||||||  |||| |||||||||||||  | ||||||| |||||||||||||||||||||||||||| | |||||||    
T  7743542 aatgaaataataaataattaacggtattatagaaagaa-acacataatttcatcaaaaataacaaaatttatttgatatcttggt 7743625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 15 - 94
Target Start/End: Original strand, 3498894 - 3498973
Alignment:
Q  15 aataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttg 94  Q
    ||||||||||||||||||||||||||  ||||||||||||| | ||| | | |||||| ||||||||||||||| |||||    
T  3498894 aataaaatgaaataataaatggttaaaagtattatagaaaagatacaaaaaatttcataaaaaataacaaaattaatttg 3498973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 99 - 153
Target Start/End: Original strand, 2911548 - 2911602
Alignment:
Q  99 cttggttaatgcaatttctccaaaatggacatatattttgaaacggagggagtat 153  Q
    |||||||| ||||||||||||||||||||||| |||||||||| |||||||||||    
T  2911548 cttggttactgcaatttctccaaaatggacatgtattttgaaatggagggagtat 2911602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 37983289 - 37983206
Alignment:
Q  15 aataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttg 102  Q
    |||| ||||||||||||||||||||| ||||||||| |||||| | |     |||||||||||||||||||||||||||| |||||||    
T  37983289 aatataatgaaataataaatggttaaaggtattataaaaaacataaaa----tttcatcaaaaataacaaaatttatttgatttcttg 37983206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 132; Significance: 2e-68; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 5 - 152
Target Start/End: Complemental strand, 1102650 - 1102503
Alignment:
Q  5 gagagagaagaataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 104  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1102650 gagagaaaaaaataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 1102551  T
Q  105 taatgcaatttctccaaaatggacatatattttgaaacggagggagta 152  Q
    || ||||||||||||||||||||||| |||||||||||||||||||||    
T  1102550 tactgcaatttctccaaaatggacatgtattttgaaacggagggagta 1102503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 15 - 154
Target Start/End: Complemental strand, 3519045 - 3518906
Alignment:
Q  15 aataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttaatgcaatt 114  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  3519045 aataaaatgaaataataaattattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatt 3518946  T
Q  115 tctccaaaatggacatatattttgaaacggagggagtatt 154  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  3518945 tctccaaaatggacatgtattttgaaacggagggagtatt 3518906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 5 - 152
Target Start/End: Complemental strand, 39938317 - 39938170
Alignment:
Q  5 gagagagaagaataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 104  Q
    |||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39938317 gagagaaaaaaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 39938218  T
Q  105 taatgcaatttctccaaaatggacatatattttgaaacggagggagta 152  Q
    || ||||||||||||||||||| ||| |||||||||||||||||||||    
T  39938217 tagtgcaatttctccaaaatggtcatgtattttgaaacggagggagta 39938170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 5 - 151
Target Start/End: Complemental strand, 23366936 - 23366790
Alignment:
Q  5 gagagagaagaataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 104  Q
    |||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  23366936 gagagaaaaaaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcataaaaaataacaaaatttatttggtttcttggt 23366837  T
Q  105 taatgcaatttctccaaaatggacatatattttgaaacggagggagt 151  Q
    || ||||||||||||||||||||||| ||||||||||||||||||||    
T  23366836 tagtgcaatttctccaaaatggacatgtattttgaaacggagggagt 23366790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 15 - 153
Target Start/End: Original strand, 12969879 - 12970017
Alignment:
Q  15 aataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttaatgcaatt 114  Q
    |||| ||| |||||||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||    
T  12969879 aatagaataaaataataaatggttaagggtattatagaaaatatacacataatttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatt 12969978  T
Q  115 tctccaaaatggacatatattttgaaacggagggagtat 153  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  12969979 tctccaaaatggacatgtattttgaaacggagggagtat 12970017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 25 - 152
Target Start/End: Original strand, 37673887 - 37674014
Alignment:
Q  25 aataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttaatgcaatttctccaaaat 124  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  37673887 aataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttgatttcttggttagtgcaatttctccaaaat 37673986  T
Q  125 ggacatatattttgaaacggagggagta 152  Q
    | |||| |||||||||||||||||||||    
T  37673987 gaacatgtattttgaaacggagggagta 37674014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 5 - 124
Target Start/End: Complemental strand, 1646434 - 1646317
Alignment:
Q  5 gagagagaagaataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 104  Q
    |||||| || ||||||||||||||||||||| |||||||||||||||||||||||||  |||||||||||||||||||||||||||||| ||||||||||    
T  1646434 gagagaaaaaaataaaatgaaataataaatgattaagggtattatagaaaacacaca--tattttcatcaaaaataacaaaatttatttagtttcttggt 1646337  T
Q  105 taatgcaatttctccaaaat 124  Q
    |  |||||||||||||||||    
T  1646336 tgctgcaatttctccaaaat 1646317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 22388275 - 22388335
Alignment:
Q  15 aataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaa 75  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  22388275 aataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaa 22388335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 30 - 104
Target Start/End: Original strand, 35179090 - 35179164
Alignment:
Q  30 taaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 104  Q
    ||||| ||||||| |||||||||||| ||||||| | |||||||||||||||||||||||||||  |||||||||    
T  35179090 taaatagttaaggttattatagaaaaaacacacaaaatttcatcaaaaataacaaaatttatttcatttcttggt 35179164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 99 - 152
Target Start/End: Original strand, 34224378 - 34224431
Alignment:
Q  99 cttggttaatgcaatttctccaaaatggacatatattttgaaacggagggagta 152  Q
    |||||||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  34224378 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 34224431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 15 - 104
Target Start/End: Complemental strand, 18078193 - 18078104
Alignment:
Q  15 aataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 104  Q
    |||| |||||| ||||||||||| ||| |||||||||||||  |||| | |  ||||||||||||||||||||||||||| ||| |||||    
T  18078193 aatagaatgaattaataaatggtcaagagtattatagaaaatccacaaaaaaattcatcaaaaataacaaaatttatttgattttttggt 18078104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 15 - 104
Target Start/End: Complemental strand, 19976468 - 19976380
Alignment:
Q  15 aataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 104  Q
    |||| ||| ||||||||||| | |||||||||||||||||| | ||||||| ||| ||||||| || ||||||||||||| |||||||||    
T  19976468 aatataataaaataataaataggtaagggtattatagaaaaaa-acacataattttatcaaaagtaccaaaatttatttgatttcttggt 19976380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 93
Target Start/End: Complemental strand, 14779914 - 14779838
Alignment:
Q  15 aataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttattt 93  Q
    |||| ||||||||||||||||  ||||  |||||||||||| ||||| ||| ||||||||||||||| |||||||||||    
T  14779914 aatataatgaaataataaatgagtaag--tattatagaaaaaacacaaataatttcatcaaaaataaaaaaatttattt 14779838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 101
Target Start/End: Original strand, 32840312 - 32840401
Alignment:
Q  15 aataaaatgaaataataaatggttaagggtattatagaaa---acacacacatattttcatcaaaaataacaaaatttatttggtttctt 101  Q
    |||| ||||||||||||||| | ||| |||||||||||||   | | ||||| | |||||||||||||||||||||||||||| ||||||    
T  32840312 aatagaatgaaataataaatcgataatggtattatagaaagaaaaaaacacagaatttcatcaaaaataacaaaatttatttgatttctt 32840401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 25 - 94
Target Start/End: Original strand, 39562037 - 39562104
Alignment:
Q  25 aataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttg 94  Q
    ||||||||||||||||||||||||  ||||| ||| | ||| |||| |||||||||||||||||||||||    
T  39562037 aataataaatggttaagggtatta--gaaaaaacaaaaataatttcttcaaaaataacaaaatttatttg 39562104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 34242107 - 34242040
Alignment:
Q  20 aatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaattt 89  Q
    ||||||||||||||||| ||||||| ||| | |||| ||||| |   |||||||||||||||||||||||    
T  34242107 aatgaaataataaatgggtaagggtgttacaaaaaaaacacagaa--tttcatcaaaaataacaaaattt 34242040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 152
Target Start/End: Complemental strand, 8042050 - 8042022
Alignment:
Q  124 tggacatatattttgaaacggagggagta 152  Q
    |||||||||||||||||||||||||||||    
T  8042050 tggacatatattttgaaacggagggagta 8042022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 130; Significance: 3e-67; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 5 - 154
Target Start/End: Complemental strand, 3383223 - 3383074
Alignment:
Q  5 gagagagaagaataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 104  Q
    |||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3383223 gagagaaaaaaataaaatgaaataataaatgtttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 3383124  T
Q  105 taatgcaatttctccaaaatggacatatattttgaaacggagggagtatt 154  Q
    || |||||||||||||||||||||||||||||||||||||| ||||||||    
T  3383123 tactgcaatttctccaaaatggacatatattttgaaacggaaggagtatt 3383074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 5 - 153
Target Start/End: Complemental strand, 13364990 - 13364842
Alignment:
Q  5 gagagagaagaataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 104  Q
    |||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13364990 gagagaaaaaaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 13364891  T
Q  105 taatgcaatttctccaaaatggacatatattttgaaacggagggagtat 153  Q
    || |||||||||||||||||| |||| ||||||||||||||||||||||    
T  13364890 tagtgcaatttctccaaaatgaacatgtattttgaaacggagggagtat 13364842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 8 - 153
Target Start/End: Complemental strand, 29375282 - 29375137
Alignment:
Q  8 agagaagaataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttaa 107  Q
    |||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||     
T  29375282 agagaaaaaaaaaaagaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataagaaaatttatttggtttcttggttac 29375183  T
Q  108 tgcaatttctccaaaatggacatatattttgaaacggagggagtat 153  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||    
T  29375182 tgcaatttctccaaaatggacatgtattttgaaacggagggagtat 29375137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 5 - 152
Target Start/End: Complemental strand, 199002 - 198855
Alignment:
Q  5 gagagagaagaataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 104  Q
    |||||| || ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  199002 gagagaaaaaaataaaatgaaataataaatgattaagggtattatagaaaacacacatatattttcatcaaaaataacaaaatttatttggtttcttggt 198903  T
Q  105 taatgcaatttctccaaaatggacatatattttgaaacggagggagta 152  Q
     | ||||||||||||||||||||||| |||||||||||||||||||||    
T  198902 cagtgcaatttctccaaaatggacatgtattttgaaacggagggagta 198855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 5 - 152
Target Start/End: Original strand, 23088061 - 23088208
Alignment:
Q  5 gagagagaagaataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 104  Q
    |||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23088061 gagagaaaaaaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 23088160  T
Q  105 taatgcaatttctccaaaatggacatatattttgaaacggagggagta 152  Q
    || |||||||||| |||||| ||||||||||||||||| |||||||||    
T  23088161 tagtgcaatttcttcaaaatagacatatattttgaaacagagggagta 23088208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 5 - 152
Target Start/End: Original strand, 46694240 - 46694387
Alignment:
Q  5 gagagagaagaataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 104  Q
    |||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  46694240 gagagaaaaaaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttgat 46694339  T
Q  105 taatgcaatttctccaaaatggacatatattttgaaacggagggagta 152  Q
    || |||||||||||||||| |||||| |||||||||||||||||||||    
T  46694340 tagtgcaatttctccaaaaaggacatgtattttgaaacggagggagta 46694387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 17 - 153
Target Start/End: Original strand, 19241810 - 19241946
Alignment:
Q  17 taaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttaatgcaatttc 116  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  19241810 taaaatgaaataataaatgattaagggtattatagaaaacacacatatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttc 19241909  T
Q  117 tccaaaatggacatatattttgaaacggagggagtat 153  Q
     ||||||||||||| ||||||||||||||||||||||    
T  19241910 accaaaatggacatgtattttgaaacggagggagtat 19241946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 5 - 152
Target Start/End: Complemental strand, 36881427 - 36881282
Alignment:
Q  5 gagagagaagaataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 104  Q
    |||||| || ||||||||||||||||||||  |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  36881427 gagagaaaaaaataaaatgaaataataaataattaagggtattatagaaaacacaca--tattttcatcaaaaataacaaaatttatttggtttcttggt 36881330  T
Q  105 taatgcaatttctccaaaatggacatatattttgaaacggagggagta 152  Q
    || ||||||||||||||||||||||| |||||||||||||||||||||    
T  36881329 tagtgcaatttctccaaaatggacatgtattttgaaacggagggagta 36881282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 15 - 153
Target Start/End: Complemental strand, 43750274 - 43750136
Alignment:
Q  15 aataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttaatgcaatt 114  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| | |||||    
T  43750274 aatagaatgaaataataaatggttaagtgtattatagaaaacacacatataatttcatcaaaaataacaaaatttatttggtttcttggttactccaatt 43750175  T
Q  115 tctccaaaatggacatatattttgaaacggagggagtat 153  Q
    |||||||||||||||| |||||||||||| |||||||||    
T  43750174 tctccaaaatggacatgtattttgaaacgaagggagtat 43750136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 48 - 145
Target Start/End: Original strand, 32835129 - 32835226
Alignment:
Q  48 atagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttaatgcaatttctccaaaatggacatatattttgaaacgga 145  Q
    |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  32835129 atagaaaacacacacataatttcatcaaaaataacaaaatttatttgttttcttggttattgcaatttctccaaaatggacatgtattttgaaacgga 32835226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 31 - 153
Target Start/End: Complemental strand, 13702890 - 13702768
Alignment:
Q  31 aaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttaatgcaatttctccaaaatggacat 130  Q
    |||||||||| |||||||||||||||| ||| ||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| | |||    
T  13702890 aaatggttaaaggtattatagaaaacaaacatataatttcatcaaaaatatcaaaatttatttggtttcttggttactgcaatttctccaaaataggcat 13702791  T
Q  131 atattttgaaacggagggagtat 153  Q
     |||||| ||| ||| |||||||    
T  13702790 gtattttaaaatggatggagtat 13702768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 74 - 157
Target Start/End: Original strand, 27707363 - 27707446
Alignment:
Q  74 aaaaataacaaaatttatttggtttcttggttaatgcaatttctccaaaatggacatatattttgaaacggagggagtatttat 157  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||| ||||    
T  27707363 aaaaataacaaaatttatttggtttcttggttactgcaatttctccaaaatggacatgtatttcgaaacggagggagtagttat 27707446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 20 - 93
Target Start/End: Complemental strand, 37781069 - 37780996
Alignment:
Q  20 aatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttattt 93  Q
    |||||||||||||||||||||  ||||||||||||| ||||||| | ||||||||||||||| |||||||||||    
T  37781069 aatgaaataataaatggttaatagtattatagaaaaaacacacagaatttcatcaaaaataataaaatttattt 37780996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 99 - 153
Target Start/End: Complemental strand, 12094635 - 12094581
Alignment:
Q  99 cttggttaatgcaatttctccaaaatggacatatattttgaaacggagggagtat 153  Q
    |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  12094635 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagtat 12094581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 15 - 100
Target Start/End: Original strand, 19897067 - 19897152
Alignment:
Q  15 aataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttct 100  Q
    |||| |||||||||||||| |  |||||||||||||||||| ||||| | | |||||| ||||||||||||||||||||| |||||    
T  19897067 aatagaatgaaataataaaagagtaagggtattatagaaaaaacacaaagaatttcataaaaaataacaaaatttatttgatttct 19897152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 99 - 153
Target Start/End: Original strand, 44277455 - 44277509
Alignment:
Q  99 cttggttaatgcaatttctccaaaatggacatatattttgaaacggagggagtat 153  Q
    |||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||    
T  44277455 cttggttactgcaatttctccaaaatagacatgtattttgaaacggagggagtat 44277509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 24 - 101
Target Start/End: Original strand, 1455297 - 1455374
Alignment:
Q  24 aaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttctt 101  Q
    |||||||||||||| ||| | ||||||||| | ||||| ||| ||| |||||||||||||||||||||||| ||||||    
T  1455297 aaataataaatggtgaagagaattatagaagaaacacaaataattttatcaaaaataacaaaatttatttgatttctt 1455374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 99 - 152
Target Start/End: Complemental strand, 19911562 - 19911509
Alignment:
Q  99 cttggttaatgcaatttctccaaaatggacatatattttgaaacggagggagta 152  Q
    |||||||| |||||||||||||||||| |||| |||||||||||||||||||||    
T  19911562 cttggttactgcaatttctccaaaatgaacatgtattttgaaacggagggagta 19911509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 67 - 154
Target Start/End: Complemental strand, 37293522 - 37293435
Alignment:
Q  67 tttcatcaaaaataacaaaatttatttggtttcttggttaatgcaatttctccaaaatggacatatattttgaaacggagggagtatt 154  Q
    ||||||||||||| |||| ||||||||| || ||||||   || ||||||| |||||||||||  |||| ||||||||||||||||||    
T  37293522 tttcatcaaaaatgacaacatttatttgattccttggtatgtgtaatttcttcaaaatggacaagtattgtgaaacggagggagtatt 37293435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 6 - 64
Target Start/End: Original strand, 27707119 - 27707177
Alignment:
Q  6 agagagaagaataaaatgaaataataaatggttaagggtattatagaaaacacacacat 64  Q
    ||||| || ||||||| |||||||||||||||||||| |||||||||||||||| ||||    
T  27707119 agagaaaaaaataaaaagaaataataaatggttaaggatattatagaaaacacatacat 27707177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 111 - 152
Target Start/End: Original strand, 12095423 - 12095464
Alignment:
Q  111 aatttctccaaaatggacatatattttgaaacggagggagta 152  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  12095423 aatttctctaaaatggacatatattttgaaacggagggagta 12095464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 99 - 152
Target Start/End: Complemental strand, 38805298 - 38805245
Alignment:
Q  99 cttggttaatgcaatttctccaaaatggacatatattttgaaacggagggagta 152  Q
    |||||||| ||||||||||| ||||||||||| |||||| ||||||||||||||    
T  38805298 cttggttactgcaatttctctaaaatggacatgtattttaaaacggagggagta 38805245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 124
Target Start/End: Original strand, 48820444 - 48820501
Alignment:
Q  67 tttcatcaaaaataacaaaatttatttggtttcttggttaatgcaatttctccaaaat 124  Q
    |||||||||||||||||||||||||||||||| |||| ||  | ||||||||||||||    
T  48820444 tttcatcaaaaataacaaaatttatttggtttattggataccgtaatttctccaaaat 48820501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 111 - 155
Target Start/End: Original strand, 19912174 - 19912218
Alignment:
Q  111 aatttctccaaaatggacatatattttgaaacggagggagtattt 155  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||    
T  19912174 aatttctctaaaatggacatgtattttgaaacggagggagtattt 19912218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 111 - 155
Target Start/End: Original strand, 38806341 - 38806385
Alignment:
Q  111 aatttctccaaaatggacatatattttgaaacggagggagtattt 155  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||    
T  38806341 aatttctctaaaatggacatgtattttgaaacggagggagtattt 38806385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 102
Target Start/End: Complemental strand, 44522567 - 44522491
Alignment:
Q  24 aaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttg 102  Q
    |||||||||||||||||  ||||||||||||  | ||||||  |||||| |||||||| |||||||||||| |||||||    
T  44522567 aaataataaatggttaaaagtattatagaaa--aaacacatgatttcataaaaaataataaaatttatttgatttcttg 44522491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 83 - 153
Target Start/End: Complemental strand, 48963223 - 48963155
Alignment:
Q  83 aaaatttatttggtttcttggttaatgcaatttctccaaaatggacatatattttgaaacggagggagtat 153  Q
    |||| ||||||| ||| |||||||  |||||||||||||||| || || ||||||||||||||||||||||    
T  48963223 aaaaattatttgatttattggtta--gcaatttctccaaaatagatatgtattttgaaacggagggagtat 48963155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 53559750 - 53559837
Alignment:
Q  15 aataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttg 102  Q
    ||||||||||||||||||| || ||||| |||  || | || ||||| | | |||||||||||||||||| ||||||||| |||||||    
T  53559750 aataaaatgaaataataaacgggtaaggatatcgtaaataaaacacagagaatttcatcaaaaataacaacatttatttgttttcttg 53559837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 93
Target Start/End: Complemental strand, 24064361 - 24064283
Alignment:
Q  15 aataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttattt 93  Q
    |||| ||| ||||||||||||| |||||||||||||||||| |||||   | ||| || ||| ||||||||||||||||    
T  24064361 aatagaataaaataataaatgggtaagggtattatagaaaaaacacagtgaattttataaaatataacaaaatttattt 24064283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 26105178 - 26105079
Alignment:
Q  5 gagagagaagaataaaatgaaataataaatggttaagggtattat-agaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttgg 103  Q
    |||||| || |||| |||||||||||||||||||||||||||| | | |||||||| | | |   |||| ||||||||||||||||||||| ||| ||||    
T  26105178 gagagaaaaaaatataatgaaataataaatggttaagggtattgtaaaaaaacaca-aaaaaaaatcattaaaaataacaaaatttatttgatttattgg 26105080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 93
Target Start/End: Original strand, 52805166 - 52805244
Alignment:
Q  15 aataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttattt 93  Q
    |||| ||| ||||||||||||  |||| ||||||||||||| |  || | | ||||||||||||| |||||||||||||    
T  52805166 aatataataaaataataaatgtgtaagagtattatagaaaaaatgcaaacaatttcatcaaaaatgacaaaatttattt 52805244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 129
Target Start/End: Complemental strand, 54086690 - 54086577
Alignment:
Q  15 aataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttaatgcaatt 114  Q
    |||| ||||||||||||| ||  |||||||||||||||||| | ||| | | ||||||||| ||| |||| ||||||||| || |||||    || ||||    
T  54086690 aatagaatgaaataataa-tgagtaagggtattatagaaaaaatacaaagaatttcatcaataatgacaacatttatttgattccttggcatgtgtaatt 54086592  T
Q  115 tctccaaaatggaca 129  Q
    ||| |||||||||||    
T  54086591 tcttcaaaatggaca 54086577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 152
Target Start/End: Complemental strand, 44276816 - 44276775
Alignment:
Q  111 aatttctccaaaatggacatatattttgaaacggagggagta 152  Q
    |||||||| ||||||||||| ||||||||||||||| |||||    
T  44276816 aatttctctaaaatggacatgtattttgaaacggagagagta 44276775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 156
Target Start/End: Original strand, 27010708 - 27010740
Alignment:
Q  124 tggacatatattttgaaacggagggagtattta 156  Q
    ||||||| |||||||||||||||||||||||||    
T  27010708 tggacatgtattttgaaacggagggagtattta 27010740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 129; Significance: 1e-66; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 5 - 153
Target Start/End: Complemental strand, 29260339 - 29260191
Alignment:
Q  5 gagagagaagaataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 104  Q
    |||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29260339 gagagaaaaaaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 29260240  T
Q  105 taatgcaatttctccaaaatggacatatattttgaaacggagggagtat 153  Q
    || ||||||||||||||||||||||| ||||||||||||||||||||||    
T  29260239 tagtgcaatttctccaaaatggacatgtattttgaaacggagggagtat 29260191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 5 - 152
Target Start/End: Complemental strand, 8626629 - 8626482
Alignment:
Q  5 gagagagaagaataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 104  Q
    |||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8626629 gagagaaaaaaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 8626530  T
Q  105 taatgcaatttctccaaaatggacatatattttgaaacggagggagta 152  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||||    
T  8626529 taatgcaatttcttcaaaatggacatgtattttgaaacggagggagta 8626482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 15 - 153
Target Start/End: Complemental strand, 1605716 - 1605578
Alignment:
Q  15 aataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttaatgcaatt 114  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  1605716 aataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatt 1605617  T
Q  115 tctccaaaatggacatatattttgaaacggagggagtat 153  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  1605616 tctccaaaatggacatgtattttgaaacggagggagtat 1605578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 5 - 145
Target Start/End: Original strand, 30734613 - 30734753
Alignment:
Q  5 gagagagaagaataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 104  Q
    |||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30734613 gagagaaaaaaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 30734712  T
Q  105 taatgcaatttctccaaaatggacatatattttgaaacgga 145  Q
    || ||||||||||||||||||||||| ||||||||||||||    
T  30734713 tagtgcaatttctccaaaatggacatgtattttgaaacgga 30734753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 15 - 153
Target Start/End: Complemental strand, 13757345 - 13757207
Alignment:
Q  15 aataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttaatgcaatt 114  Q
    |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||    
T  13757345 aataaaatgaaataataattgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgtaatt 13757246  T
Q  115 tctccaaaatggacatatattttgaaacggagggagtat 153  Q
    |||||||||||||||| ||||||||||||||| ||||||    
T  13757245 tctccaaaatggacatgtattttgaaacggagagagtat 13757207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 15 - 153
Target Start/End: Complemental strand, 7761436 - 7761300
Alignment:
Q  15 aataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttaatgcaatt 114  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||  |||||||||||||||||||||||||||||| |||||||||||| |||||||    
T  7761436 aataaaatgaaataataaatgattaagggtattatagaaaacacaca--tattttcatcaaaaataacaaaatttatttagtttcttggttagtgcaatt 7761339  T
Q  115 tctccaaaatggacatatattttgaaacggagggagtat 153  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  7761338 tctccaaaatggacatgtattttgaaacggagggagtat 7761300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 15 - 155
Target Start/End: Original strand, 15064834 - 15064974
Alignment:
Q  15 aataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttaatgcaatt 114  Q
    |||| ||| |||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||  |||||||    
T  15064834 aatataatcaaataataaatggttaagggtagtataaaaaacacacacataatttcatcaaaaataacaaaatttatttggtttcttggttgctgcaatt 15064933  T
Q  115 tctccaaaatggacatatattttgaaacggagggagtattt 155  Q
    |||| ||||||||||| ||||||||||||||||||||||||    
T  15064934 tctctaaaatggacatgtattttgaaacggagggagtattt 15064974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 5 - 137
Target Start/End: Original strand, 31559866 - 31559998
Alignment:
Q  5 gagagagaagaataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 104  Q
    ||||||||| || |||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||| |||||    
T  31559866 gagagagaaaaaaaaaatgaaataataaatgattaagggtattacagaaaacatacacatattttcatcaaaaataacaaaatttatttgattttttggt 31559965  T
Q  105 taatgcaatttctccaaaatggacatatatttt 137  Q
    |||||||||||||||||||||||||| ||||||    
T  31559966 taatgcaatttctccaaaatggacatgtatttt 31559998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 5 - 159
Target Start/End: Complemental strand, 17942592 - 17942436
Alignment:
Q  5 gagagagaagaataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaat--aacaaaatttatttggtttcttg 102  Q
    |||||| || |||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||  || ||||  ||||||||||||||    
T  17942592 gagagaaaaaaataaaatgaaataataaatggttaagggtattatagagaacacgcacataatttcatcaaaaataaaaaaaaaaatatttggtttcttg 17942493  T
Q  103 gttaatgcaatttctccaaaatggacatatattttgaaacggagggagtatttatta 159  Q
    |||| ||||||||||| ||||||||||| |||||||||||| ||||||||| |||||    
T  17942492 gttactgcaatttctcaaaaatggacatgtattttgaaacgaagggagtatatatta 17942436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 5 - 152
Target Start/End: Complemental strand, 4129574 - 4129435
Alignment:
Q  5 gagagagaagaataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 104  Q
    |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||        |||    
T  4129574 gagagaaaaaaataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcataaaaaataacaaaatttattt--------ggt 4129483  T
Q  105 taatgcaatttctccaaaatggacatatattttgaaacggagggagta 152  Q
    || ||||||||||||||| |||| || |||||||||||||||||||||    
T  4129482 tactgcaatttctccaaagtggatatgtattttgaaacggagggagta 4129435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 15 - 152
Target Start/End: Complemental strand, 8235761 - 8235624
Alignment:
Q  15 aataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttaatgcaatt 114  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||||||| | |||| |||||||||||| ||||||| |||||||||||| |||||||    
T  8235761 aatagaatgaaataataaatgattaagggtattatagaaaacacacacataatatcataaaaaataacaaattttatttcgtttcttggttactgcaatt 8235662  T
Q  115 tctccaaaatggacatatattttgaaacggagggagta 152  Q
    ||| ||||||| |||| |||||| |||  |||||||||    
T  8235661 tcttcaaaatgtacatgtattttaaaatagagggagta 8235624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 36 - 146
Target Start/End: Original strand, 30734771 - 30734879
Alignment:
Q  36 gttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttaatgcaatttctccaaaatggacatatatt 135  Q
    ||||||||||||||||||||||||||  || |||||||||||||||||||||||||||| ||| || |||| |||||||||| |||||||||||| ||||    
T  30734771 gttaagggtattatagaaaacacaca--taatttcatcaaaaataacaaaatttatttgatttttttgttactgcaatttcttcaaaatggacatgtatt 30734868  T
Q  136 ttgaaacggag 146  Q
    |||||||||||    
T  30734869 ttgaaacggag 30734879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 103
Target Start/End: Complemental strand, 14287125 - 14287038
Alignment:
Q  15 aataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttgg 103  Q
    ||||||||||||||||||| || |||||||||||||||||| |  |||| | |||||| ||||||||||||||||||||| ||| ||||    
T  14287125 aataaaatgaaataataaaggggtaagggtattatagaaaa-aagcacagaatttcataaaaaataacaaaatttatttgatttattgg 14287038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 99 - 154
Target Start/End: Original strand, 19996715 - 19996770
Alignment:
Q  99 cttggttaatgcaatttctccaaaatggacatatattttgaaacggagggagtatt 154  Q
    |||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||    
T  19996715 cttggttactgcaatttctccaaaatagacatgtattttgaaacggagggagtatt 19996770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 104
Target Start/End: Complemental strand, 3798233 - 3798151
Alignment:
Q  22 tgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 104  Q
    ||||||||||||||  ||||||| |||||||||| ||||| |||  ||||| ||||||||||||||||||||| ||| |||||    
T  3798233 tgaaataataaatgtgtaagggtgttatagaaaaaacacaaataacttcatgaaaaataacaaaatttatttgattttttggt 3798151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 101
Target Start/End: Original strand, 21277574 - 21277659
Alignment:
Q  15 aataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttctt 101  Q
    |||| |||||| || |||||  ||||||||||||||||||| ||||| | |||||||| ||||||||||||||||||||| ||||||    
T  21277574 aatagaatgaagtactaaataattaagggtattatagaaaa-acacataaattttcataaaaaataacaaaatttatttgatttctt 21277659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 20 - 101
Target Start/End: Original strand, 11370630 - 11370711
Alignment:
Q  20 aatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttctt 101  Q
    |||| ||||||||||||||||| |||||||| |||| |||||   | | |||||||||||||||||||||||||| ||||||    
T  11370630 aatggaataataaatggttaagagtattataaaaaaaacacaatgaatatcatcaaaaataacaaaatttatttgatttctt 11370711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 153
Target Start/End: Complemental strand, 19996363 - 19996321
Alignment:
Q  111 aatttctccaaaatggacatatattttgaaacggagggagtat 153  Q
    |||||||| ||||||||||| ||||||||||||||||||||||    
T  19996363 aatttctctaaaatggacatgtattttgaaacggagggagtat 19996321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 155
Target Start/End: Complemental strand, 15064733 - 15064692
Alignment:
Q  114 ttctccaaaatggacatatattttgaaacggagggagtattt 155  Q
    ||||||||||||||||  |||| |||||||||||||||||||    
T  15064733 ttctccaaaatggacaagtattatgaaacggagggagtattt 15064692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 26860902 - 26860819
Alignment:
Q  15 aataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttg 102  Q
    |||| ||| |||||||||||||||||||||  ||||||| | ||||| |   ||||||||||||||| |||| ||||||| |||||||    
T  26860902 aatagaataaaataataaatggttaagggt--tatagaataaacacaaaa--tttcatcaaaaataaaaaaagttatttgatttcttg 26860819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 94
Target Start/End: Original strand, 33845469 - 33845502
Alignment:
Q  61 acatattttcatcaaaaataacaaaatttatttg 94  Q
    ||||| ||||||||||||||||||||||||||||    
T  33845469 acataatttcatcaaaaataacaaaatttatttg 33845502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 102
Target Start/End: Complemental strand, 1814741 - 1814645
Alignment:
Q  6 agagagaagaataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttg 102  Q
    |||||||  |||| ||| |||||| |||  ||||||||  |||||| ||| ||||  | | ||||||||||||||||||| |||||||| |||||||    
T  1814741 agagagagaaatagaataaaataacaaaaagttaagggcgttataggaaaaacacgaagaatttcatcaaaaataacaaagtttatttgatttcttg 1814645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 129; Significance: 1e-66; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 5 - 153
Target Start/End: Original strand, 40122615 - 40122763
Alignment:
Q  5 gagagagaagaataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 104  Q
    |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  40122615 gagagaaaaaaataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggttttttggt 40122714  T
Q  105 taatgcaatttctccaaaatggacatatattttgaaacggagggagtat 153  Q
    || ||||||||||||||||||||||| ||||||||||||||||||||||    
T  40122715 tactgcaatttctccaaaatggacatgtattttgaaacggagggagtat 40122763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 6 - 153
Target Start/End: Complemental strand, 21310571 - 21310424
Alignment:
Q  6 agagagaagaataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggtt 105  Q
    |||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21310571 agagagaaaaaaaaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggtt 21310472  T
Q  106 aatgcaatttctccaaaatggacatatattttgaaacggagggagtat 153  Q
    | ||||||||||||||||||||||| ||||||||||||||||||||||    
T  21310471 agtgcaatttctccaaaatggacatgtattttgaaacggagggagtat 21310424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 5 - 155
Target Start/End: Original strand, 24706377 - 24706527
Alignment:
Q  5 gagagagaagaataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 104  Q
    |||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24706377 gagagaaaaaaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 24706476  T
Q  105 taatgcaatttctccaaaatggacatatattttgaaacggagggagtattt 155  Q
    || ||||||||||||||||||||||| |||||||||||||| |||||||||    
T  24706477 tagtgcaatttctccaaaatggacatgtattttgaaacggatggagtattt 24706527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 15 - 153
Target Start/End: Complemental strand, 25704788 - 25704650
Alignment:
Q  15 aataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttaatgcaatt 114  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  25704788 aataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatt 25704689  T
Q  115 tctccaaaatggacatatattttgaaacggagggagtat 153  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  25704688 tctccaaaatggacatgtattttgaaacggagggagtat 25704650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 5 - 154
Target Start/End: Original strand, 21661665 - 21661814
Alignment:
Q  5 gagagagaagaataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 104  Q
    |||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  21661665 gagagaaaaaaataaaatgaaataataaatggttaaaggtattatagaaaacacacacatattttcatcaaaaataataaaatttatttggtttcttggt 21661764  T
Q  105 taatgcaatttctccaaaatggacatatattttgaaacggagggagtatt 154  Q
    || ||||||||||||||||||||||| |||||||||| ||||||||||||    
T  21661765 tactgcaatttctccaaaatggacatgtattttgaaagggagggagtatt 21661814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 5 - 154
Target Start/End: Original strand, 21670429 - 21670578
Alignment:
Q  5 gagagagaagaataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 104  Q
    |||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  21670429 gagagaaaaaaataaaatgaaataataaatggttaaaggtattatagaaaacacacacatattttcatcaaaaataaaaaaatttatttggtttcttggt 21670528  T
Q  105 taatgcaatttctccaaaatggacatatattttgaaacggagggagtatt 154  Q
    || ||||||||||||||||||||||| |||||||||| ||||||||||||    
T  21670529 tactgcaatttctccaaaatggacatgtattttgaaagggagggagtatt 21670578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 5 - 153
Target Start/End: Complemental strand, 14261191 - 14261043
Alignment:
Q  5 gagagagaagaataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 104  Q
    |||||| || ||||||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  14261191 gagagaaaaaaataaaatgaaataataaattattaagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttggt 14261092  T
Q  105 taatgcaatttctccaaaatggacatatattttgaaacggagggagtat 153  Q
    || ||||||||||||||||||||||| ||||||||||||||||||||||    
T  14261091 tagtgcaatttctccaaaatggacatgtattttgaaacggagggagtat 14261043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 15 - 159
Target Start/End: Original strand, 22321407 - 22321551
Alignment:
Q  15 aataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttaatgcaatt 114  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||    
T  22321407 aataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcataaaaaataacaaaatttatttggtttcttggttagtgcaatt 22321506  T
Q  115 tctccaaaatggacatatattttgaaacggagggagtatttatta 159  Q
    |||||||||||||||| |||||||||||||| ||||||| |||||    
T  22321507 tctccaaaatggacatgtattttgaaacggaaggagtatctatta 22321551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 15 - 153
Target Start/End: Complemental strand, 12071698 - 12071560
Alignment:
Q  15 aataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttaatgcaatt 114  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||    
T  12071698 aataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttagtttattggttagtgcaatt 12071599  T
Q  115 tctccaaaatggacatatattttgaaacggagggagtat 153  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  12071598 tctccaaaatggacatgtattttgaaacggagggagtat 12071560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 15 - 152
Target Start/End: Original strand, 34324722 - 34324860
Alignment:
Q  15 aataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaattt-atttggtttcttggttaatgcaat 113  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||    
T  34324722 aataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttaatttagtttcttggttagtgcaat 34324821  T
Q  114 ttctccaaaatggacatatattttgaaacggagggagta 152  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  34324822 ttctccaaaatggacatgtattttgaaacggagggagta 34324860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 5 - 153
Target Start/End: Complemental strand, 44568984 - 44568836
Alignment:
Q  5 gagagagaagaataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 104  Q
    |||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  44568984 gagagaaaaaaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcataaaaaataacaaaatttatttggttttttggt 44568885  T
Q  105 taatgcaatttctccaaaatggacatatattttgaaacggagggagtat 153  Q
    || |||||||||| |||||||||||| |||||||||||||| |||||||    
T  44568884 tagtgcaatttcttcaaaatggacatgtattttgaaacggaaggagtat 44568836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 5 - 157
Target Start/End: Complemental strand, 50768011 - 50767859
Alignment:
Q  5 gagagagaagaataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 104  Q
    |||||| || ||||||||||||||||||||  ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |    
T  50768011 gagagaaaaaaataaaatgaaataataaattattaagggtattatagaaaacacacatatattttcatcaaaaataacaaaatttatttggtttcttgat 50767912  T
Q  105 taatgcaatttctccaaaatggacatatattttgaaacggagggagtatttat 157  Q
    || ||||||||||| |||||| | || ||||||||||||||  ||||||||||    
T  50767911 tagtgcaatttctctaaaatgaatatgtattttgaaacggaatgagtatttat 50767859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 15 - 152
Target Start/End: Original strand, 20249153 - 20249289
Alignment:
Q  15 aataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttaatgcaatt 114  Q
    |||| ||| ||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||    
T  20249153 aatagaataaaataataaatggttaagggtattatagaaa-cacacacataatttcttcaaaaataacaaaatttatttggtttcttggttaatacaatt 20249251  T
Q  115 tctccaaaatggacatatattttgaaacggagggagta 152  Q
    | |||||||||||||| ||||||||||||||| |||||    
T  20249252 tatccaaaatggacatgtattttgaaacggagagagta 20249289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 6 - 150
Target Start/End: Complemental strand, 31892380 - 31892240
Alignment:
Q  6 agagagaagaataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggtt 105  Q
    |||||||| |||| |||||||||||||||||| || ||||||||||||||||||    || ||||||||||||||| |||||||||||| ||||||||||    
T  31892380 agagagaaaaatagaatgaaataataaatggtcaaaggtattatagaaaacaca----taatttcatcaaaaataataaaatttatttgatttcttggtt 31892285  T
Q  106 aatgcaatttctccaaaatggacatatattttgaaacggagggag 150  Q
    | ||||||||||  |||||| |||| |||||||| ||||||||||    
T  31892284 actgcaatttctttaaaatgaacatgtattttgatacggagggag 31892240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 36 - 155
Target Start/End: Complemental strand, 1988151 - 1988033
Alignment:
Q  36 gttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttaatgcaatttctccaaaatggacatatatt 135  Q
    |||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||| |||||| |||| |||||||||||| |||| ||||||||||    
T  1988151 gttaagggtattatagaaaacacatacataatttcatcaaaaataataaaatttatttgatttcttagttactgcaatttctcc-aaatagacatatatt 1988053  T
Q  136 ttgaaacggagggagtattt 155  Q
    || |||| || |||||||||    
T  1988052 ttaaaacagatggagtattt 1988033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 15 - 104
Target Start/End: Original strand, 20714488 - 20714577
Alignment:
Q  15 aataaaatgaaataataaatggttaagggtattatagaaaa-cacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 104  Q
    |||| ||||||||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||| ||| |||||    
T  20714488 aatataatgaaataataaatggttaagg-tattatagaaaaacacacacatagtttcatcaaaaataacaaaatttatttgatttattggt 20714577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 15 - 101
Target Start/End: Complemental strand, 32543617 - 32543532
Alignment:
Q  15 aataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttctt 101  Q
    ||||||||||||||||||||| |||||||||||||| |||| ||||| | | ||||||||||| |||||||| ||||||||||||||    
T  32543617 aataaaatgaaataataaatgattaagggtattata-aaaaaacacaaagaatttcatcaaaattaacaaaaattatttggtttctt 32543532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 20 - 102
Target Start/End: Original strand, 6129093 - 6129175
Alignment:
Q  20 aatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttg 102  Q
    |||||||||||||||| ||||||||||| ||||||| | ||| | | ||| |||||||||||||||||||||||| |||||||    
T  6129093 aatgaaataataaatgattaagggtattgtagaaaaaatacaaagaattttatcaaaaataacaaaatttatttgatttcttg 6129175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 155
Target Start/End: Complemental strand, 19692860 - 19692720
Alignment:
Q  15 aataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttaatgcaatt 114  Q
    |||| ||||||||||||||||  ||||| |||||||||||| ||||| | | |||||| |||||| |||| ||||||||| |||||||||   |  ||||    
T  19692860 aatagaatgaaataataaatgagtaaggatattatagaaaaaacacaaagaatttcataaaaaatgacaacatttatttgatttcttggtatgtataatt 19692761  T
Q  115 tctccaaaatggacatatattttgaaacggagggagtattt 155  Q
    ||| ||||||||| |  |||| |||||| |||| |||||||    
T  19692760 tcttcaaaatggagaattattgtgaaacagaggaagtattt 19692720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 155
Target Start/End: Complemental strand, 19703445 - 19703305
Alignment:
Q  15 aataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttaatgcaatt 114  Q
    |||| ||||||||||||||||  ||||| |||||||||||| ||||| | | |||||| |||||| |||| ||||||||| |||||||||   |  ||||    
T  19703445 aatagaatgaaataataaatgagtaaggatattatagaaaaaacacaaagaatttcataaaaaatgacaacatttatttgatttcttggtatgtataatt 19703346  T
Q  115 tctccaaaatggacatatattttgaaacggagggagtattt 155  Q
    ||| ||||||||| |  |||| |||||| |||| |||||||    
T  19703345 tcttcaaaatggagaattattgtgaaacagaggaagtattt 19703305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 5 - 84
Target Start/End: Original strand, 18507394 - 18507472
Alignment:
Q  5 gagagagaagaataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaa 84  Q
    ||||||||| |||| ||||||||||||||| || |||| |||||||||||| ||||||| | ||||||||||||||||||    
T  18507394 gagagagaataatataatgaaataataaattgtcaagg-tattatagaaaaaacacacaaaatttcatcaaaaataacaa 18507472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 23 - 152
Target Start/End: Original strand, 26676714 - 26676843
Alignment:
Q  23 gaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttaatgcaatttctccaaa 122  Q
    |||||||||||||  |||||||||||||||||| ||||  | | |||||| |||||| |||| ||||||||| || ||||||   || ||||||| ||||    
T  26676714 gaaataataaatgagtaagggtattatagaaaaaacacgaagaatttcataaaaaatgacaacatttatttgattccttggtatgtgtaatttcttcaaa 26676813  T
Q  123 atggacatatattttgaaacggagggagta 152  Q
    ||||| |  |||| |||||||||| |||||    
T  26676814 atggataagtattgtgaaacggagagagta 26676843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 37 - 92
Target Start/End: Original strand, 34284179 - 34284234
Alignment:
Q  37 ttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatt 92  Q
    ||||||||||||||||||| | ||| ||| ||||||||||| ||||||||||||||    
T  34284179 ttaagggtattatagaaaaaatacaaatagtttcatcaaaagtaacaaaatttatt 34284234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 80
Target Start/End: Complemental strand, 21064897 - 21064834
Alignment:
Q  15 aataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaata 80  Q
    |||| ||||||||||||||| |||||| |||||||  |||| ||||||||| ||||||||||||||    
T  21064897 aatagaatgaaataataaatagttaagagtattat--aaaaaacacacataatttcatcaaaaata 21064834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 67 - 104
Target Start/End: Complemental strand, 48652305 - 48652268
Alignment:
Q  67 tttcatcaaaaataacaaaatttatttggtttcttggt 104  Q
    |||||||||||||||||||||||||||| |||||||||    
T  48652305 tttcatcaaaaataacaaaatttatttgatttcttggt 48652268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 51777755 - 51777715
Alignment:
Q  15 aataaaatgaaataataaatggttaagggtattatagaaaa 55  Q
    ||||| ||||||||||||||||||||| |||||||||||||    
T  51777755 aataacatgaaataataaatggttaagagtattatagaaaa 51777715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 137
Target Start/End: Complemental strand, 19361700 - 19361662
Alignment:
Q  99 cttggttaatgcaatttctccaaaatggacatatatttt 137  Q
    |||||||| ||||||||||||||||||||||| ||||||    
T  19361700 cttggttactgcaatttctccaaaatggacatgtatttt 19361662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 128; Significance: 4e-66; HSPs: 38)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 5 - 152
Target Start/End: Original strand, 23045409 - 23045556
Alignment:
Q  5 gagagagaagaataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 104  Q
    |||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23045409 gagagaaaaaaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 23045508  T
Q  105 taatgcaatttctccaaaatggacatatattttgaaacggagggagta 152  Q
    || ||||||||||||||||||||||| |||||||||||||||||||||    
T  23045509 tagtgcaatttctccaaaatggacatgtattttgaaacggagggagta 23045556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 5 - 152
Target Start/End: Complemental strand, 284480 - 284333
Alignment:
Q  5 gagagagaagaataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 104  Q
    ||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  284480 gagagagaaaagtaaaatgaaataataaatgattaagggtattatagaaaacacacatatattttcatcaaaaataacaaaatttatttggtttcttggt 284381  T
Q  105 taatgcaatttctccaaaatggacatatattttgaaacggagggagta 152  Q
    || ||||||||||||||||||||||| |||||||||||||||||||||    
T  284380 tagtgcaatttctccaaaatggacatgtattttgaaacggagggagta 284333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 5 - 153
Target Start/End: Original strand, 40783787 - 40783935
Alignment:
Q  5 gagagagaagaataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 104  Q
    |||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  40783787 gagagaaaaaaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttgatttcttggt 40783886  T
Q  105 taatgcaatttctccaaaatggacatatattttgaaacggagggagtat 153  Q
    || |||||||||||||||||| |||| ||||||||||||||||||||||    
T  40783887 tagtgcaatttctccaaaatgaacatgtattttgaaacggagggagtat 40783935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 15 - 152
Target Start/End: Complemental strand, 321763 - 321626
Alignment:
Q  15 aataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttaatgcaatt 114  Q
    ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  321763 aataaaatgaaataataaatgattaaggatattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatt 321664  T
Q  115 tctccaaaatggacatatattttgaaacggagggagta 152  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  321663 tctccaaaatgaacatgtattttgaaacggagggagta 321626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 15 - 152
Target Start/End: Original strand, 24772045 - 24772182
Alignment:
Q  15 aataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttaatgcaatt 114  Q
    |||| ||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||    
T  24772045 aatagaataaaataataaatggttaagggtattatagaaaatacacacataatttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatt 24772144  T
Q  115 tctccaaaatggacatatattttgaaacggagggagta 152  Q
    ||| |||||||||||| |||||||||||||||||||||    
T  24772145 tcttcaaaatggacatgtattttgaaacggagggagta 24772182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 15 - 151
Target Start/End: Original strand, 27211104 - 27211240
Alignment:
Q  15 aataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttaatgcaatt 114  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||| |||||||    
T  27211104 aatagaataaaataataaatggttaagggtattatagaaaacacacatataatttcctcaaaaataacaaaatttatttggtttcttggttattgcaatt 27211203  T
Q  115 tctccaaaatggacatatattttgaaacggagggagt 151  Q
    |||||||||||||||| ||||||||||||||||||||    
T  27211204 tctccaaaatggacatgtattttgaaacggagggagt 27211240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 15 - 153
Target Start/End: Complemental strand, 23526377 - 23526239
Alignment:
Q  15 aataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttaatgcaatt 114  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||    
T  23526377 aatagaatgaaataataaatggttaagggtattatagaaaacacacacataatttcatcaaaaataacaaaatttatttggtttcttgattactgcaatt 23526278  T
Q  115 tctccaaaatggacatatattttgaaacggagggagtat 153  Q
    ||||||||||| |||| |||||||||| ||| |||||||    
T  23526277 tctccaaaatgaacatgtattttgaaatggaaggagtat 23526239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 15 - 155
Target Start/End: Complemental strand, 46771774 - 46771634
Alignment:
Q  15 aataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttaatgcaatt 114  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||||||||||| |||||||    
T  46771774 aatagaatgaaaaaataaatggttaagggtattatagaaaacacacacataatttcatcaaaaataacaaaatttatttaatttcttggttactgcaatt 46771675  T
Q  115 tctccaaaatggacatatattttgaaacggagggagtattt 155  Q
    |||||||||||||||| ||||||||||||||  ||||||||    
T  46771674 tctccaaaatggacatgtattttgaaacggatagagtattt 46771634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 5 - 152
Target Start/End: Original strand, 47037982 - 47038127
Alignment:
Q  5 gagagagaagaataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 104  Q
    |||||| || ||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| |||||| ||    
T  47037982 gagagaaaaaaataaaatgaaataataaatgattaagggtattatagaaaacac--acatattttcatcaaaaataacaaaatttatttgatttcttagt 47038079  T
Q  105 taatgcaatttctccaaaatggacatatattttgaaacggagggagta 152  Q
    || | ||||||||||||||||||||| |||||||||||||| ||||||    
T  47038080 tagtacaatttctccaaaatggacatgtattttgaaacggatggagta 47038127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 15 - 130
Target Start/End: Complemental strand, 33082882 - 33082767
Alignment:
Q  15 aataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttaatgcaatt 114  Q
    |||| ||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||| |||||||    
T  33082882 aatagaataaaataataaatggttaagggtattatagaaaatacacacataatttcatcaaaaataacaaaatttatttgatttcttggttagtgcaatt 33082783  T
Q  115 tctccaaaatggacat 130  Q
    |||||||||| |||||    
T  33082782 tctccaaaatagacat 33082767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 15 - 137
Target Start/End: Original strand, 52037262 - 52037382
Alignment:
Q  15 aataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttaatgcaatt 114  Q
    |||| |||||||||||||||||||||| |||||||||||||||||||  || ||| ||||||||||| |||||||||||||||| |||| ||||||||||    
T  52037262 aatagaatgaaataataaatggttaagagtattatagaaaacacaca--taattttatcaaaaataataaaatttatttggttttttggataatgcaatt 52037359  T
Q  115 tctccaaaatggacatatatttt 137  Q
    |||| ||||||||||| ||||||    
T  52037360 tctctaaaatggacatgtatttt 52037382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 5 - 102
Target Start/End: Complemental strand, 1749454 - 1749357
Alignment:
Q  5 gagagagaagaataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttg 102  Q
    ||||||||| |||| ||| ||||||||||||||||| | |||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||    
T  1749454 gagagagaaaaatagaataaaataataaatggttaatgctattatagaaaacacacatataatttcatcaaaaataacaaaatttatttgatttcttg 1749357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 24 - 101
Target Start/End: Original strand, 1837978 - 1838053
Alignment:
Q  24 aaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttctt 101  Q
    ||||||||||||| |||||||||||||||||| |||||  || |||||||||||||||||||||||||||| ||||||    
T  1837978 aaataataaatgggtaagggtattatagaaaaaacaca--taatttcatcaaaaataacaaaatttatttgatttctt 1838053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 93
Target Start/End: Complemental strand, 7765147 - 7765072
Alignment:
Q  18 aaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttattt 93  Q
    ||||| |||||||||||||||| ||||||||  ||||||||||| ||| ||||| |||||||||||||||||||||    
T  7765147 aaaattaaataataaatggttatgggtattacggaaaacacacatataatttcaccaaaaataacaaaatttattt 7765072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 99 - 154
Target Start/End: Complemental strand, 9588723 - 9588668
Alignment:
Q  99 cttggttaatgcaatttctccaaaatggacatatattttgaaacggagggagtatt 154  Q
    |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||    
T  9588723 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagtatt 9588668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 104
Target Start/End: Original strand, 31003926 - 31004012
Alignment:
Q  15 aataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 104  Q
    |||| ||| |||||||||||||||||||||||||||||||| | ||||||| |||||| ||||||   |||||||||||| |||||||||    
T  31003926 aatagaattaaataataaatggttaagggtattatagaaaaaatacacatactttcattaaaaat---aaaatttatttgatttcttggt 31004012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 30 - 104
Target Start/End: Complemental strand, 3657199 - 3657125
Alignment:
Q  30 taaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 104  Q
    ||||||||||||| |||||||||||| ||| ||| | |||||| ||||||||||||||||||||| |||||||||    
T  3657199 taaatggttaaggttattatagaaaaaacatacaaaatttcattaaaaataacaaaatttatttgatttcttggt 3657125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 99 - 153
Target Start/End: Complemental strand, 3943113 - 3943059
Alignment:
Q  99 cttggttaatgcaatttctccaaaatggacatatattttgaaacggagggagtat 153  Q
    |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  3943113 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagtat 3943059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 99 - 152
Target Start/End: Complemental strand, 41959131 - 41959078
Alignment:
Q  99 cttggttaatgcaatttctccaaaatggacatatattttgaaacggagggagta 152  Q
    |||||||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  41959131 cttggttattgcaatttctccaaaatggacatgtattttgaaacggagggagta 41959078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 93
Target Start/End: Complemental strand, 18396832 - 18396754
Alignment:
Q  15 aataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttattt 93  Q
    |||| ||||||||||| |||||||||   ||||||||||||  |||||||| |||||| ||||||||||||||||||||    
T  18396832 aatagaatgaaataatgaatggttaaatatattatagaaaaaccacacataatttcataaaaaataacaaaatttattt 18396754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 104
Target Start/End: Original strand, 40261419 - 40261501
Alignment:
Q  23 gaaataataaatggttaagggtattatagaaaaca-cacacatattttcatcaaaaataacaaaatttatttggtttcttggt 104  Q
    |||||||||||||||||| | |||||||||||| | |||||  | ||||||||||| |||||||||||||||| |||||||||    
T  40261419 gaaataataaatggttaatgatattatagaaaaaaacacacgcaatttcatcaaaattaacaaaatttatttgatttcttggt 40261501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 152
Target Start/End: Original strand, 51064893 - 51065033
Alignment:
Q  15 aataaaatgaaataataaatggttaagggtatt---atagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttaatgca 111  Q
    |||| |||||||||||||| |  ||||||||||   |||||||| ||||| | | ||||||||||||| |||| ||||||||| || ||||||   || |    
T  51064893 aatataatgaaataataaacgagtaagggtattattatagaaaaaacacaaagaatttcatcaaaaatgacaacatttatttgattccttggtatgtgta 51064992  T
Q  112 atttctccaaaatggacatatattttgaaacggagggagta 152  Q
    ||||||  ||||||||||  |||| ||||||||||||||||    
T  51064993 atttctttaaaatggacaagtattgtgaaacggagggagta 51065033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 104
Target Start/End: Complemental strand, 52478103 - 52478016
Alignment:
Q  15 aataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 104  Q
    |||| |||||||| ||||||  |||||| |||||||||||| ||||| |   |||||||||||||||||||||||||||| |||||||||    
T  52478103 aatagaatgaaatgataaatttttaaggttattatagaaaaaacacaaaa--tttcatcaaaaataacaaaatttatttgatttcttggt 52478016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 99 - 152
Target Start/End: Original strand, 13984991 - 13985044
Alignment:
Q  99 cttggttaatgcaatttctccaaaatggacatatattttgaaacggagggagta 152  Q
    |||||||| ||||||||||||||||||||||| |||||||||||||| ||||||    
T  13984991 cttggttactgcaatttctccaaaatggacatgtattttgaaacggatggagta 13985044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 31061594 - 31061662
Alignment:
Q  15 aataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaa 84  Q
    |||| |||||||||||||||||||| ||||||||| ||||| ||||||||| |||||| |||||||||||    
T  31061594 aatataatgaaataataaatggtta-gggtattatggaaaaaacacacataatttcataaaaaataacaa 31061662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 27 - 92
Target Start/End: Original strand, 40562733 - 40562797
Alignment:
Q  27 taataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatt 92  Q
    |||||||||||||| |||||||||||||||||| | ||| ||| ||||||||||||||||||||||    
T  40562733 taataaatggttaatggtattatagaaaacacatatataattt-atcaaaaataacaaaatttatt 40562797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 86 - 138
Target Start/End: Original strand, 40564241 - 40564293
Alignment:
Q  86 atttatttggtttcttggttaatgcaatttctccaaaatggacatatattttg 138  Q
    ||||||||||||||||||||| ||| |||| ||||||||||||||||||||||    
T  40564241 atttatttggtttcttggttactgcgatttttccaaaatggacatatattttg 40564293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 111 - 154
Target Start/End: Complemental strand, 44227889 - 44227846
Alignment:
Q  111 aatttctccaaaatggacatatattttgaaacggagggagtatt 154  Q
    |||||||||||||||||||| |||||||||||||||||||||||    
T  44227889 aatttctccaaaatggacatgtattttgaaacggagggagtatt 44227846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 27143151 - 27143239
Alignment:
Q  15 aataaaatgaaataataaatggttaagggtattatagaaaaca-cacacatattttcatcaaaaataacaaaatttatttggtttcttg 102  Q
    |||| |||||||||||||||| |||||  |||||||||||| | | |||  | |||| ||||||||||||||||||||||| |||||||    
T  27143151 aatagaatgaaataataaatgattaagaatattatagaaaaaaactcacggaatttcctcaaaaataacaaaatttatttgatttcttg 27143239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 111 - 154
Target Start/End: Original strand, 41959809 - 41959852
Alignment:
Q  111 aatttctccaaaatggacatatattttgaaacggagggagtatt 154  Q
    |||||||| ||||||||||| |||||||||||||||||||||||    
T  41959809 aatttctctaaaatggacatgtattttgaaacggagggagtatt 41959852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 153
Target Start/End: Original strand, 44228228 - 44228282
Alignment:
Q  99 cttggttaatgcaatttctccaaaatggacatatattttgaaacggagggagtat 153  Q
    ||||||||  |||||||||||||||||||||| |||||||||| ||||| |||||    
T  44228228 cttggttacagcaatttctccaaaatggacatgtattttgaaatggaggtagtat 44228282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 111 - 152
Target Start/End: Original strand, 3943763 - 3943804
Alignment:
Q  111 aatttctccaaaatggacatatattttgaaacggagggagta 152  Q
    |||||||| ||||||||||| |||||||||||||||||||||    
T  3943763 aatttctctaaaatggacatgtattttgaaacggagggagta 3943804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 69 - 104
Target Start/End: Original strand, 14351954 - 14351989
Alignment:
Q  69 tcatcaaaaataacaaaatttatttggtttcttggt 104  Q
    |||||||||||||||||||||||||| |||||||||    
T  14351954 tcatcaaaaataacaaaatttatttgttttcttggt 14351989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 24876699 - 24876633
Alignment:
Q  15 aataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaa 84  Q
    |||| |||||||| ||||||||| || ||||||||||||||   ||||||| | ||||||||||||||||    
T  24876699 aatagaatgaaatgataaatggtcaaaggtattatagaaaa---acacataatatcatcaaaaataacaa 24876633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 153
Target Start/End: Original strand, 9589631 - 9589673
Alignment:
Q  111 aatttctccaaaatggacatatattttgaaacggagggagtat 153  Q
    |||||||| ||||| ||||| ||||||||||||||||||||||    
T  9589631 aatttctctaaaatagacatgtattttgaaacggagggagtat 9589673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 104
Target Start/End: Original strand, 34458863 - 34458950
Alignment:
Q  15 aataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 104  Q
    |||| |||||||||||||||   ||||| |||||||||||  | ||||| | |||||| |||||||  |||||||||||| |||||||||    
T  34458863 aatagaatgaaataataaattagtaaggttattatagaaa--aaacacagaatttcataaaaaatagaaaaatttatttgatttcttggt 34458950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 60
Target Start/End: Complemental strand, 37926945 - 37926900
Alignment:
Q  15 aataaaatgaaataataaatggttaagggtattatagaaaacacac 60  Q
    ||||||||||| |||||||| || ||||||||||||||||| ||||    
T  37926945 aataaaatgaagtaataaattgtcaagggtattatagaaaaaacac 37926900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 156
Target Start/End: Original strand, 36399332 - 36399364
Alignment:
Q  124 tggacatatattttgaaacggagggagtattta 156  Q
    ||||||| |||||||||||||||||||||||||    
T  36399332 tggacatgtattttgaaacggagggagtattta 36399364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 127; Significance: 2e-65; HSPs: 32)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 5 - 155
Target Start/End: Original strand, 40058433 - 40058583
Alignment:
Q  5 gagagagaagaataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 104  Q
    |||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40058433 gagagaaaaaaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 40058532  T
Q  105 taatgcaatttctccaaaatggacatatattttgaaacggagggagtattt 155  Q
    || |||||||||||| |||||||||| ||||||||||||||||||||||||    
T  40058533 tagtgcaatttctccgaaatggacatgtattttgaaacggagggagtattt 40058583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 15 - 154
Target Start/End: Original strand, 2540071 - 2540210
Alignment:
Q  15 aataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttaatgcaatt 114  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  2540071 aataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatt 2540170  T
Q  115 tctccaaaatggacatatattttgaaacggagggagtatt 154  Q
    |||||||||||||||| |||||||||||||||| ||||||    
T  2540171 tctccaaaatggacatgtattttgaaacggaggaagtatt 2540210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 5 - 152
Target Start/End: Original strand, 11174353 - 11174500
Alignment:
Q  5 gagagagaagaataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 104  Q
    |||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11174353 gagagaaaaaaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 11174452  T
Q  105 taatgcaatttctccaaaatggacatatattttgaaacggagggagta 152  Q
    || |||||||||||||||||| |||| |||||||||||||||||||||    
T  11174453 tagtgcaatttctccaaaatgaacatgtattttgaaacggagggagta 11174500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 17 - 152
Target Start/End: Complemental strand, 3585586 - 3585451
Alignment:
Q  17 taaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttaatgcaatttc 116  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  3585586 taaaatgaaataataaatgattaagggtattatagaaaacacacatatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttc 3585487  T
Q  117 tccaaaatggacatatattttgaaacggagggagta 152  Q
    |||||||||||||| |||||||||||||||||||||    
T  3585486 tccaaaatggacatgtattttgaaacggagggagta 3585451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 17 - 153
Target Start/End: Original strand, 11646467 - 11646603
Alignment:
Q  17 taaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttaatgcaatttc 116  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  11646467 taaaatgaaataataaatgattaagggtattatagaaaacacacatatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttc 11646566  T
Q  117 tccaaaatggacatatattttgaaacggagggagtat 153  Q
    |||||||||||||| |||||||||||| |||||||||    
T  11646567 tccaaaatggacatgtattttgaaacgaagggagtat 11646603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 5 - 152
Target Start/End: Original strand, 43275529 - 43275674
Alignment:
Q  5 gagagagaagaataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 104  Q
    |||||| || ||||||||||||||||||||| ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  43275529 gagagaaaaaaataaaatgaaataataaatgattaagggtattatagaaaacac--acatattttcatcaaaaataacaaaatttatttggtttcttggt 43275626  T
Q  105 taatgcaatttctccaaaatggacatatattttgaaacggagggagta 152  Q
    || ||||||||||||||||||||||| |||||||||||||||||||||    
T  43275627 tagtgcaatttctccaaaatggacatgtattttgaaacggagggagta 43275674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 5 - 152
Target Start/End: Complemental strand, 7147060 - 7146913
Alignment:
Q  5 gagagagaagaataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 104  Q
    |||||| || ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7147060 gagagaaaaaaataaaatgaaataataaatgattaagggtattataaaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 7146961  T
Q  105 taatgcaatttctccaaaatggacatatattttgaaacggagggagta 152  Q
    || |||||||||| |||||||||||| |||||||||||||| ||||||    
T  7146960 tactgcaatttcttcaaaatggacatgtattttgaaacggaaggagta 7146913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 5 - 152
Target Start/End: Complemental strand, 37345718 - 37345571
Alignment:
Q  5 gagagagaagaataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 104  Q
    |||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  37345718 gagagaaaaaaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcattaaaaataacaaaatttatttggtttcttggt 37345619  T
Q  105 taatgcaatttctccaaaatggacatatattttgaaacggagggagta 152  Q
    |  |||||||||| |||||||||||| |||||||||||||||||||||    
T  37345618 tggtgcaatttcttcaaaatggacatgtattttgaaacggagggagta 37345571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 5 - 153
Target Start/End: Original strand, 40918861 - 40919007
Alignment:
Q  5 gagagagaagaataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 104  Q
    |||||| || ||||||||||||||||||||| |||||||||||||||||||||||||  | ||||||| |||||||||||||||||||||||||||||||    
T  40918861 gagagaaaaaaataaaatgaaataataaatgattaagggtattatagaaaacacaca--tgttttcataaaaaataacaaaatttatttggtttcttggt 40918958  T
Q  105 taatgcaatttctccaaaatggacatatattttgaaacggagggagtat 153  Q
    || ||||||||||||||||||||||| ||||||||||||||||||||||    
T  40918959 tagtgcaatttctccaaaatggacatgtattttgaaacggagggagtat 40919007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 15 - 145
Target Start/End: Original strand, 30999663 - 30999791
Alignment:
Q  15 aataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttaatgcaatt 114  Q
    ||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  30999663 aataaaatgaaataataaatgattaagggtattatagaaaacac--acatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatt 30999760  T
Q  115 tctccaaaatggacatatattttgaaacgga 145  Q
    |||||||||| ||||| ||||||||||||||    
T  30999761 tctccaaaattgacatgtattttgaaacgga 30999791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 15 - 152
Target Start/End: Complemental strand, 27035133 - 27034997
Alignment:
Q  15 aataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttaatgcaatt 114  Q
    |||| ||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||| |||| ||||||||||||||||||| |||||||    
T  27035133 aatagaatgaaataataaatggttaagggtattatagaaa-cacagacataatttcatcaaaaataaaaaaaattatttggtttcttggttactgcaatt 27035035  T
Q  115 tctccaaaatggacatatattttgaaacggagggagta 152  Q
    |||||||||||||||| |||||||||||||||||||||    
T  27035034 tctccaaaatggacatgtattttgaaacggagggagta 27034997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 17 - 152
Target Start/End: Complemental strand, 36068215 - 36068080
Alignment:
Q  17 taaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttaatgcaatttc 116  Q
    |||||||||||||| |||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||| | ||||| |    
T  36068215 taaaatgaaataattaatgattaagggtattatagaaaacacacatatattttcattaaaaataacaaaatttatttggttttttggttagtacaattcc 36068116  T
Q  117 tccaaaatggacatatattttgaaacggagggagta 152  Q
    |||||||||||||| |||||||||||||||||||||    
T  36068115 tccaaaatggacatgtattttgaaacggagggagta 36068080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 6 - 152
Target Start/End: Original strand, 20546420 - 20546564
Alignment:
Q  6 agagagaagaataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggtt 105  Q
    ||||| || |||| ||||||||||||||| ||||||||||| ||| ||||||||||  || |||||||||||||||||||||||||||  ||||||| ||    
T  20546420 agagaaaaaaatataatgaaataataaattgttaagggtatcatataaaacacaca--taatttcatcaaaaataacaaaatttatttaatttcttgatt 20546517  T
Q  106 aatgcaatttctccaaaatggacatatattttgaaacggagggagta 152  Q
      |||||||||| ||||||||||||||||||||||| ||||||||||    
T  20546518 gttgcaatttcttcaaaatggacatatattttgaaatggagggagta 20546564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 15 - 104
Target Start/End: Original strand, 28326797 - 28326883
Alignment:
Q  15 aataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 104  Q
    |||| ||||||||||||||| |||||| ||||||| |||||   ||||||| |||||||||||||||||||||||||||| |||||||||    
T  28326797 aatagaatgaaataataaatagttaagagtattattgaaaa---acacataatttcatcaaaaataacaaaatttatttgatttcttggt 28326883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 20 - 153
Target Start/End: Complemental strand, 28562554 - 28562420
Alignment:
Q  20 aatgaaataataaatggttaagggtattatagaaaaca-cacacatattttcatcaaaaataacaaaatttatttggtttcttggttaatgcaatttctc 118  Q
    |||||||| |||||||  |||||||||||||||||| | |||| | | ||||||||||||| |||| ||||||||| || ||||||   || |||||||     
T  28562554 aatgaaatcataaatgagtaagggtattatagaaaaaaacacaaagaatttcatcaaaaatgacaacatttatttgattccttggtatgtgtaatttctt 28562455  T
Q  119 caaaatggacatatattttgaaacggagggagtat 153  Q
    |||||||||||  |||||||||||||||| |||||    
T  28562454 caaaatggacaagtattttgaaacggaggaagtat 28562420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 15 - 94
Target Start/End: Original strand, 13881094 - 13881174
Alignment:
Q  15 aataaaatgaaataataaatggttaagggtattatag-aaaacacacacatattttcatcaaaaataacaaaatttatttg 94  Q
    |||| |||||||||||||||| ||||||||||||||| |||| || |||| | ||||||||||||||||||||||||||||    
T  13881094 aatataatgaaataataaatgattaagggtattatagaaaaaaacgcacacaatttcatcaaaaataacaaaatttatttg 13881174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 150
Target Start/End: Complemental strand, 35866751 - 35866616
Alignment:
Q  15 aataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttaatgcaatt 114  Q
    |||| ||| |||||||||||| ||||||||||||||||||| ||||| | | |||||| ||||||||||| |||||| |  |||||||||  ||  ||||    
T  35866751 aatagaataaaataataaatgtttaagggtattatagaaaaaacacaaagaatttcatgaaaaataacaacatttatctaatttcttggtatatataatt 35866652  T
Q  115 tctccaaaatggacatatattttgaaacggagggag 150  Q
    |||  ||||||||||  |||| ||||||||| ||||    
T  35866651 tctttaaaatggacaagtattgtgaaacggaaggag 35866616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 99 - 153
Target Start/End: Original strand, 8697898 - 8697952
Alignment:
Q  99 cttggttaatgcaatttctccaaaatggacatatattttgaaacggagggagtat 153  Q
    |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  8697898 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagtat 8697952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 99 - 153
Target Start/End: Original strand, 41307961 - 41308015
Alignment:
Q  99 cttggttaatgcaatttctccaaaatggacatatattttgaaacggagggagtat 153  Q
    |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  41307961 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagtat 41308015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 99 - 152
Target Start/End: Original strand, 45278701 - 45278754
Alignment:
Q  99 cttggttaatgcaatttctccaaaatggacatatattttgaaacggagggagta 152  Q
    |||||||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  45278701 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 45278754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 99 - 153
Target Start/End: Complemental strand, 10646645 - 10646591
Alignment:
Q  99 cttggttaatgcaatttctccaaaatggacatatattttgaaacggagggagtat 153  Q
    |||||||| ||||||||||||||||||||||| |||||||||||||||| |||||    
T  10646645 cttggttactgcaatttctccaaaatggacatgtattttgaaacggaggaagtat 10646591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 15 - 104
Target Start/End: Complemental strand, 37510403 - 37510314
Alignment:
Q  15 aataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 104  Q
    |||||||||||||| |||||| ||||||||||||| ||||| | | | | | ||| || |||||||||||||||||||| ||||||||||    
T  37510403 aataaaatgaaatattaaatgattaagggtattattgaaaaaatagaaagaattttattaaaaataacaaaatttatttagtttcttggt 37510314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 99 - 152
Target Start/End: Original strand, 40486453 - 40486506
Alignment:
Q  99 cttggttaatgcaatttctccaaaatggacatatattttgaaacggagggagta 152  Q
    |||||||| |||||||||| |||||||||||| |||||||||||||||||||||    
T  40486453 cttggttactgcaatttcttcaaaatggacatgtattttgaaacggagggagta 40486506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 93
Target Start/End: Original strand, 10181002 - 10181074
Alignment:
Q  20 aatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttattt 93  Q
    ||||||||||||||||||||| ||||||||| |||| ||| || || ||| || ||||||||||||||||||||    
T  10181002 aatgaaataataaatggttaacggtattata-aaaaaacaaacgtaattttataaaaaataacaaaatttattt 10181074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 153
Target Start/End: Complemental strand, 28568051 - 28567918
Alignment:
Q  20 aatgaaataataaatggttaagggtattatag-aaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttaatgcaatttctc 118  Q
    ||||||||||||||| |   |||||||||||| |||| ||||| | | |||||| |||||| |||| ||||||||| ||  |||||   || |||||||     
T  28568051 aatgaaataataaat-gagcagggtattatagaaaaagacacaaagaatttcataaaaaatgacaacatttatttgattcattggtatgtgtaatttctt 28567953  T
Q  119 caaaatggacatatattttgaaacggagggagtat 153  Q
    |||||||||||  |||||||||||||||| |||||    
T  28567952 caaaatggacaagtattttgaaacggaggaagtat 28567918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 153
Target Start/End: Complemental strand, 28575644 - 28575511
Alignment:
Q  20 aatgaaataataaatggttaagggtattatag-aaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttaatgcaatttctc 118  Q
    ||||||||||||||| |   |||||||||||| |||| ||||| | | |||||| |||||| |||| ||||||||| ||  |||||   || |||||||     
T  28575644 aatgaaataataaat-gagcagggtattatagaaaaagacacaaagaatttcataaaaaatgacaacatttatttgattcattggtatgtgtaatttctt 28575546  T
Q  119 caaaatggacatatattttgaaacggagggagtat 153  Q
    |||||||||||  |||||||||||||||| |||||    
T  28575545 caaaatggacaagtattttgaaacggaggaagtat 28575511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 30906828 - 30906917
Alignment:
Q  15 aataaaatgaaataataaatggttaagggtattatagaaaacacac--acatattttcatcaaaaataacaaaatttatttggtttcttg 102  Q
    |||| ||| ||||||||||||||||||| | | |||||||| | ||  ||| | |||||| ||||||||||||||||||||| |||||||    
T  30906828 aatagaattaaataataaatggttaaggttttcatagaaaaaaaactcacaaaatttcataaaaaataacaaaatttatttgatttcttg 30906917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 157
Target Start/End: Complemental strand, 41305803 - 41305757
Alignment:
Q  111 aatttctccaaaatggacatatattttgaaacggagggagtatttat 157  Q
    |||||||| ||||||||||| ||||||||||||||| ||||||||||    
T  41305803 aatttctctaaaatggacatgtattttgaaacggagagagtatttat 41305757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 101
Target Start/End: Original strand, 27563999 - 27564075
Alignment:
Q  23 gaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttctt 101  Q
    |||||||||||| ||||||||| ||||| |||| | ||||||| | |||| ||||||||||||| ||||||| ||||||    
T  27563999 gaaataataaattgttaagggtgttata-aaaaaaaacacataatctcat-aaaaataacaaaaattatttgatttctt 27564075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 160
Target Start/End: Complemental strand, 616811 - 616775
Alignment:
Q  124 tggacatatattttgaaacggagggagtatttattac 160  Q
    ||||||| ||||||||||||||||||||||| |||||    
T  616811 tggacatgtattttgaaacggagggagtattaattac 616775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 30268530 - 30268602
Alignment:
Q  20 aatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatt 92  Q
    ||||| ||||||||| ||||  |||||||||||||| | ||| ||| || || ||||| ||||||||||||||    
T  30268530 aatgagataataaatagttagcggtattatagaaaaaagacaaataattccaccaaaagtaacaaaatttatt 30268602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 111 - 155
Target Start/End: Complemental strand, 45278053 - 45278010
Alignment:
Q  111 aatttctccaaaatggacatatattttgaaacggagggagtattt 155  Q
    |||||||| ||||||||||| ||||||||||| ||||||||||||    
T  45278053 aatttctctaaaatggacatgtattttgaaac-gagggagtattt 45278010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1431 (Bit Score: 126; Significance: 7e-65; HSPs: 1)
Name: scaffold1431
Description:

Target: scaffold1431; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 5 - 158
Target Start/End: Original strand, 29 - 182
Alignment:
Q  5 gagagagaagaataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 104  Q
    |||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29 gagagaaaaaaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 128  T
Q  105 taatgcaatttctccaaaatggacatatattttgaaacggagggagtatttatt 158  Q
    || ||||||||||||||||||||||| ||||||||||||||| |||||| ||||    
T  129 tagtgcaatttctccaaaatggacatgtattttgaaacggagagagtatatatt 182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 15 - 153
Target Start/End: Complemental strand, 45591 - 45453
Alignment:
Q  15 aataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttaatgcaatt 114  Q
    |||| ||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||  |||||||    
T  45591 aatagaataaaataataaatggttaagggtattatagaaaatacacacataatttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatt 45492  T
Q  115 tctccaaaatggacatatattttgaaacggagggagtat 153  Q
    ||||||||||| |||| ||||||||||||||||||||||    
T  45491 tctccaaaatgaacatgtattttgaaacggagggagtat 45453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1770 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: scaffold1770
Description:

Target: scaffold1770; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 5 - 152
Target Start/End: Complemental strand, 309 - 170
Alignment:
Q  5 gagagagaagaataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 104  Q
    |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||        |||    
T  309 gagagaaaaaaataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcataaaaaataacaaaatttattt--------ggt 218  T
Q  105 taatgcaatttctccaaaatggacatatattttgaaacggagggagta 152  Q
    || ||||||||||||||| |||| || |||||||||||||||||||||    
T  217 tactgcaatttctccaaagtggatatgtattttgaaacggagggagta 170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 89; Significance: 8e-43; HSPs: 2)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 274 - 366
Target Start/End: Original strand, 17742 - 17834
Alignment:
Q  274 atgttattccaaaatcaagttgcacatgtgtatttgacattattattagaaattgaataaagttaaataaagtttcattgtactgtaatgtat 366  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17742 atgttattccaaaatcaagttggacatgtgtatttgacattattattagaaattgaataaagttaaataaagtttcattgtactgtaatgtat 17834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 159 - 265
Target Start/End: Original strand, 17226 - 17326
Alignment:
Q  159 actagccacatgcatgtatatatattactatgactatgaccatgactatgtgtgtgagacttatcacgtgtcacatttaaattatttcagaatacttgat 258  Q
    |||||||| ||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17226 actagccaaatgcatgtatatatattactatgactatga------ctatgtgtgtgagacttatcacgtgtcacatttaaattatttcagaatacttgat 17319  T
Q  259 tgattga 265  Q
    |||||||    
T  17320 tgattga 17326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 5 - 137
Target Start/End: Original strand, 395 - 525
Alignment:
Q  5 gagagagaagaataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 104  Q
    ||||||||| |||| |||||||||||||||| |||||||||||||| ||||||||||  || ||| |||||||||||||||||||||||| ||| ||| |    
T  395 gagagagaaaaatagaatgaaataataaatgattaagggtattataaaaaacacaca--taattttatcaaaaataacaaaatttatttgattttttgat 492  T
Q  105 taatgcaatttctccaaaatggacatatatttt 137  Q
    || ||||||||| |||||||| |||| ||||||    
T  493 tactgcaatttcgccaaaatgaacatgtatttt 525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 70961 - 70874
Alignment:
Q  15 aataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttg 102  Q
    |||| ||||||||||||||||||||||||| ||| |||||| ||||||| | |||||||||||||||||||||||||||| |||||||    
T  70961 aatagaatgaaataataaatggttaagggtgttacagaaaaaacacacagaatttcatcaaaaataacaaaatttatttgatttcttg 70874  T

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Target: scaffold0257 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 99 - 152
Target Start/End: Complemental strand, 23520 - 23467
Alignment:
Q  99 cttggttaatgcaatttctccaaaatggacatatattttgaaacggagggagta 152  Q
    |||||||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  23520 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 23467  T

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Target: scaffold0257; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 152
Target Start/End: Original strand, 23872 - 23913
Alignment:
Q  111 aatttctccaaaatggacatatattttgaaacggagggagta 152  Q
    |||||||| ||||||||||| |||||||||||||| ||||||    
T  23872 aatttctctaaaatggacatgtattttgaaacggatggagta 23913  T

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Target: scaffold0025 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 86
Target Start/End: Original strand, 65303 - 65375
Alignment:
Q  15 aataaaatgaaataataaatggttaagggtattatag-aaaacacacacatattttcatcaaaaataacaaaa 86  Q
    |||| |||||||||||||||||||||||||||||||| |||| ||||| ||| ||||||||||||||| ||||    
T  65303 aatagaatgaaataataaatggttaagggtattatagaaaaaaacacatataatttcatcaaaaataataaaa 65375  T

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Target: scaffold0076 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 101
Target Start/End: Original strand, 15465 - 15551
Alignment:
Q  20 aatgaaataataaatggttaagggtattataga------aaacacacacatattttcatcaaaaataacaaaatttatttggtttctt 101  Q
    ||||||||||||||||||||||||||| |||||      ||| | ||| | |||||||||||||||||| ||||||||||| ||||||    
T  15465 aatgaaataataaatggttaagggtataatagaaagaagaaaaaaacatagattttcatcaaaaataac-aaatttatttgatttctt 15551  T

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Target: scaffold0321 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 158
Target Start/End: Complemental strand, 1651 - 1623
Alignment:
Q  130 tatattttgaaacggagggagtatttatt 158  Q
    |||||||||||||||||||||||||||||    
T  1651 tatattttgaaacggagggagtatttatt 1623  T

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