View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11473_low_17 (Length: 357)
Name: NF11473_low_17
Description: NF11473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11473_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 52 - 353
Target Start/End: Original strand, 6048674 - 6048978
Alignment:
| Q |
52 |
ggatcttcatggttgaacaaccttaaaggtactttttgggcacgggttctcatttttgccgagttgaaactagcaggcttctctttgtttgtaggtttct |
151 |
Q |
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| T |
6048674 |
ggatcttcatggttgaacaaccttaaatgtactttttgggcacgggttctcatttttgccgagttgaaactagcaggcttctctttgtttgtaggtttct |
6048773 |
T |
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| Q |
152 |
tctgtttcttgctggttaaag---tgtttggagatgcctgggaaatgtttgaaccaacattcctaccctccaagccttcttagtccttgcaaaatattac |
248 |
Q |
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| T |
6048774 |
tctgtttcttgctggttaaagaagtgtttggagatgcctgggaaatgtttgaaccaacattcctaccctccaagccttcttagtccttgcaaaagattac |
6048873 |
T |
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| Q |
249 |
accaaatctcctcatggaatttttagaatagtttcacttttcaacatggcagcattgacagtaaaagaaaaattctttggaggaacaaaggggggaactc |
348 |
Q |
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| T |
6048874 |
accaaatctcctcatggaatttttagagtagtttcactttttaacatggcagcattgacagtaaaagaaaaattctttggaggaacaaaggggggaactc |
6048973 |
T |
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| Q |
349 |
ttgtc |
353 |
Q |
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||||| |
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| T |
6048974 |
ttgtc |
6048978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 193 - 353
Target Start/End: Original strand, 2048529 - 2048698
Alignment:
| Q |
193 |
atgtttgaaccaacattcctaccctccaagccttctt----agtccttgcaaaatattacaccaaatctcctcatggaattttta------gaatagttt |
282 |
Q |
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| T |
2048529 |
atgtttgaaccaacattcctaccctccaagacttcatgagcagtccctgtagaatattccaccaaatctccccatagagttttcactttcagaatagttt |
2048628 |
T |
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| Q |
283 |
cacttttcaacatggcagcattgacagtaaaagaaaaattctttggaggaacaaaggggggaactcttgtc |
353 |
Q |
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| T |
2048629 |
cactttttaacatggcagcattgacaggaaaagaaaaattctttggaggaacaga-gggggaactcttgtc |
2048698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 85 - 140
Target Start/End: Complemental strand, 30646442 - 30646387
Alignment:
| Q |
85 |
ttttgggcacgggttctcatttttgccgagttgaaactagcaggcttctctttgtt |
140 |
Q |
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| T |
30646442 |
ttttgggcacgagctctcattcctgctgagttgaaactagcaggcttctctttgtt |
30646387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 226
Target Start/End: Original strand, 39539118 - 39539233
Alignment:
| Q |
114 |
gttgaaactagcaggcttctctttgtttgtaggtttcttctgtttcttgctggttaaa---gtgtttggagatgcctgggaaatgtttgaaccaacattc |
210 |
Q |
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|||||||||| |||||| |||||||| | || ||||||||||||||| ||| |||| ||||| | |||| | || ||| | ||||||| ||||| | |
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| T |
39539118 |
gttgaaactaacaggctgctctttgtatataaacttcttctgtttcttgttggataaataagtgttggaagatacttgagaagtatttgaactaacatcc |
39539217 |
T |
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| Q |
211 |
ctaccctccaagcctt |
226 |
Q |
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|||||||||||||||| |
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| T |
39539218 |
ctaccctccaagcctt |
39539233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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