View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11473_low_2 (Length: 670)
Name: NF11473_low_2
Description: NF11473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11473_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 581; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 581; E-Value: 0
Query Start/End: Original strand, 22 - 651
Target Start/End: Complemental strand, 39091640 - 39091012
Alignment:
| Q |
22 |
gtaatccctggcatactattggtctattatacacttaccttagtagtatatattgagatcaattagaagacattctaaatgcgtccccatnnnnnnngaa |
121 |
Q |
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| T |
39091640 |
gtaatccctggcatactattgatctattatacacttaccttagtagtatatattgagatcaattagaagacattctaaatgcgtccccataaaaaaa-aa |
39091542 |
T |
|
| Q |
122 |
ttcaggtcttggtgatccctagtttttgttcttgaagtgatacaaaatgtttaacatcaccaatgtgaatactatgtgctcccattggaattctcctagt |
221 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39091541 |
ttcaggtcttgatgatccctagtttttgttcttgaagtgatacaaaatgtttaacatcaccaatgtgaatactatgtgctcccattggaattctcctagt |
39091442 |
T |
|
| Q |
222 |
cccagacttatcaaccacactcaaaagcttacatacatgaatattgatcctcactcgttgctgagccttagcaggaacataaactttctcaaaagccact |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39091441 |
cccagacttatcaaccacactcaaaagcttacatacatgaatattgatcctcactcgttgctgagccttagcaggaacataaactttctcaaaagccact |
39091342 |
T |
|
| Q |
322 |
agttgcttctgtggtgcccaatgaccattacctgtaggtggtactgagaacaccaacaaagtgttagtaccatcttttgaaccaacgtttttaatatcaa |
421 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
39091341 |
agttgcttctgtggtgcccaatgaccattacctgtaggtggtactgagaacaccaacaaagtgttagtaccatcttttgaaccaacgtttttaacatcaa |
39091242 |
T |
|
| Q |
422 |
tgtcaagtctaattgaaagcttgccacatcgtgcatgtgtcactctaattgctgctttgtttgagctgtttccacgccggtgtccgtctaccggaactga |
521 |
Q |
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| T |
39091241 |
tgtcaagtctaattgaaagcttgccacatcgtgcatgtgtcactctaattgctgctttgtttgagctgtttccacggcggtgtccgtctactggaactga |
39091142 |
T |
|
| Q |
522 |
caccacttttggtgcactagctaatgtgtgaacaaagtttgtgtaagataatccgtaaccaaatggatataccacagggccgttgtaaaaacgataggtt |
621 |
Q |
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| T |
39091141 |
caccacttttggtgcactagctaatgtgtgaacaaagtttgtgtaagataatccgtaaccaaatggatataccacagggccgttgtaaaaacgataggtt |
39091042 |
T |
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| Q |
622 |
ctcccagggtaccctgtggatgagcttggt |
651 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
39091041 |
ctcccagggtaccctgtggatgagcttggt |
39091012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 96; Significance: 1e-46; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 167 - 636
Target Start/End: Original strand, 44714272 - 44714747
Alignment:
| Q |
167 |
aatgtttaacatcaccaatgtgaatactatgtgctcccattggaattctcctagtcccagacttatcaaccacactcaaaagcttacatacatgaatatt |
266 |
Q |
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|||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||| |||||||| ||||| | | |||||| ||||||||||| |
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| T |
44714272 |
aatgtttaacatcaccaatgtgaagactatgttctcccattggaattctcctaatcccagatttatcaactacactaagcaacttacaaacatgaatatt |
44714371 |
T |
|
| Q |
267 |
gatcctcactcgttgctgagccttagcaggaacataaactttctcaaaagccactagttgcttctgtggtgcccaatgaccattacctgtaggtggtact |
366 |
Q |
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| || || | ||||| || ||| |||||||||| ||||||||||||||| ||||| ||||||||| ||||||| | ||| ||||||| | |
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| T |
44714372 |
tactctaaccctttgcttagtcttggcaggaacatgaactttctcaaaagcaactaggcttttctgtggtacccaatggttaccaccattaggtggagca |
44714471 |
T |
|
| Q |
367 |
gagaacaccaacaaagtgttagtaccatcttttgaaccaacgtttttaatatcaatgtcaagtctaattgaaagcttgccacatcgtgcatgtgtcactc |
466 |
Q |
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|||||||| ||||| |||| ||| |||||| | || || || ||||| | ||||| || ||| |||||| || |||||||||| |||||||||||||| |
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| T |
44714472 |
gagaacactaacaaggtgtgagtgccatctctagatcccacattttttacatcaacgtgaagggcaattgagagtttgccacatcttgcatgtgtcactc |
44714571 |
T |
|
| Q |
467 |
taattgc--tgctt----tgtttgagctgtttccacgccggtgtccgtctaccggaactgacaccacttttggtgcactagctaatgtgtgaacaaagtt |
560 |
Q |
| |
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||||||| || || |||||| | |||| ||| | ||||| || | || ||||||||||||||| | |||||||||| |||| ||||||||| | |
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| T |
44714572 |
taattgctttgtttgaaatgtttgtgttgttgccatgtcggtgaccatggactggaactgacaccactgtgggtgcactagataattcgtgaacaaaatg |
44714671 |
T |
|
| Q |
561 |
tgtgtaagataatccgtaaccaaatggatataccacagggccgttgtaaaaacgataggttctcccagggtaccct |
636 |
Q |
| |
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|||||| | |||||| | |||||||||||||| || || || ||||| || | ||| ||||| || ||||||||| |
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| T |
44714672 |
tgtgtatgttaatccatgtccaaatggatatacaactggtcccttgtagaatctatatgttcttcctgggtaccct |
44714747 |
T |
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