View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11473_low_20 (Length: 341)
Name: NF11473_low_20
Description: NF11473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11473_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 14 - 207
Target Start/End: Complemental strand, 36810718 - 36810525
Alignment:
| Q |
14 |
gacatcaaaatttatgacataaaaattgaagagggtatgcagagggtcctagcaggaataaaggggtactcattttttgaatcccaagaaaaacaaactc |
113 |
Q |
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| T |
36810718 |
gacatcaaaatttatgacataaaaattgaagagggtatgcagagggtcctagcaggaataaagggatactcattttttgaatcccaagaaaaacaaactc |
36810619 |
T |
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| Q |
114 |
tcattatcctttctgtcttaccctagctagaaagcgacacatcaaccctaattttatgtgcaggtaatcatcacctatattcactgcttctgtc |
207 |
Q |
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| T |
36810618 |
tcattatcctttctgtcttaccctagctagaaagcgacacatcaaccctaattttatgtgcaggtaatcatcacctatattcactgcttctgtc |
36810525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 259 - 325
Target Start/End: Complemental strand, 36810473 - 36810407
Alignment:
| Q |
259 |
acatctctcatatggctcacaagagttcctcacactcttcttgagttttcattatatatatagttcc |
325 |
Q |
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| T |
36810473 |
acatctctcatatggctcacaagagttcctcacaatcttcttgagttttcattatatatatagttcc |
36810407 |
T |
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