View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11473_low_26 (Length: 302)
Name: NF11473_low_26
Description: NF11473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11473_low_26 |
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Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 283
Target Start/End: Original strand, 47561140 - 47561405
Alignment:
| Q |
18 |
taatatattctgtaaatcatgtaggcagcaaaggagtttgagtctgagcttaaaaaggaaccagattcctcaggaggggagccatctgaaaaatcaattg |
117 |
Q |
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| T |
47561140 |
taatatattttgtaaatcatgtaggcagcaaaggagtttgagtctgagcttaaaaaggaaccaggttcctcaggaggggagccatctgaaaaatcaattg |
47561239 |
T |
|
| Q |
118 |
ctgttagcgaagagaagaagcaagatactgaggtgtctagttctaaggagagtgtatgacatttgtaatagatgtgatatgatgagtaggtatcaaattt |
217 |
Q |
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| T |
47561240 |
ctgttagcgaagagaagaagcaagatactgaggtgtctagttctaaggagagtgtatgacatttgtaatagatgtgatatgatgagtaggtatcaaattt |
47561339 |
T |
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| Q |
218 |
tcaccatgacaatatatattcnnnnnnncattcttctttaacaaatatctgttaatttatatcaat |
283 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
47561340 |
tcaccatgacaatatatattcaaaaaaacattcttctttaacaaatatctgttaatttatatcaat |
47561405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 28 - 237
Target Start/End: Original strand, 38969234 - 38969440
Alignment:
| Q |
28 |
tgtaaatcatgtaggcagcaaaggagtttgagtctgagcttaaaaaggaaccagattcctcaggaggggagccatctgaaaaatcaattgctgttagcga |
127 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||| |||||||||||| ||||| | |||| ||||| |
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| T |
38969234 |
tgtaaatcatgtaggcagcaaaggagtttgagtctgagcttaaaaatgacccagattccacaggagaggagccatctgagaaatcta---ctgtgagcga |
38969330 |
T |
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| Q |
128 |
agagaagaagcaagatactgaggtgtctagttctaaggagagtgtatgacatttgtaatagatgtgatatgatgagtaggtatcaaattttcaccatgac |
227 |
Q |
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|||| |||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
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| T |
38969331 |
agaggagaagcaagacacagaggtaactagttctaaggagagtgtatgacatttgtaatagatgtgatatgataagtaggtatcaaatttttaccatgac |
38969430 |
T |
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| Q |
228 |
aatatatatt |
237 |
Q |
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|||||||||| |
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| T |
38969431 |
aatatatatt |
38969440 |
T |
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