View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11473_low_27 (Length: 300)
Name: NF11473_low_27
Description: NF11473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11473_low_27 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 43186410 - 43186116
Alignment:
| Q |
1 |
tttggttacattaatatgcttttgatgcagtgaggtataaagatggttactacattgaaagtaatcaaagtaaaggaagtgagatacacaaccttttggc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43186410 |
tttggttacattaatatgcttttgatgcagtgaagtataaagatggttactacattgaaagtaatcaaagtaaaggaagtgagatacacaaccttttggc |
43186311 |
T |
|
| Q |
101 |
ttacagaaaggtgtagcaattataacagccatgattaagatcaagggctagaaaggaactgtcactttaagtttgttttaaaatagtttaatgcaatcta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43186310 |
ttacagaaaggtgtagcaattataacagccatgattaagatcaagggctagaaaggaactgtcactttaagtttgttttaaaatagtttaatgcaatcta |
43186211 |
T |
|
| Q |
201 |
tgtacttggtgtattttttaattagtgataatttgtaatattggttagctaaacaatgcaaaatacattctcttaagactagtgtctgtgctcct |
295 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |||| |
|
|
| T |
43186210 |
tgtacttggtgtattttttaattagtgataatttgtaatattggttagctaaacaatgcaaaatacattctcttatgactagtgtcagtggtcct |
43186116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 284
Target Start/End: Complemental strand, 5039519 - 5039479
Alignment:
| Q |
244 |
gttagctaaacaatgcaaaatacattctcttaagactagtg |
284 |
Q |
| |
|
||||||||| |||||||||| |||||||||||||| ||||| |
|
|
| T |
5039519 |
gttagctaaccaatgcaaaagacattctcttaagattagtg |
5039479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University