View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11473_low_28 (Length: 297)
Name: NF11473_low_28
Description: NF11473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11473_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 19 - 286
Target Start/End: Original strand, 41715595 - 41715862
Alignment:
| Q |
19 |
caagtaccttaaatattatttcttcatgtgcaaaaccattgcctatgtaattcagctttttagttaaattgtaaatggtccttatgcattatgtagagca |
118 |
Q |
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| T |
41715595 |
caagtaccttaaatattatttcttcatgtgcaaaaccattgcctatgtaattcagctttttagttaaattgtaaatggtccttatgcattatgtagagca |
41715694 |
T |
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| Q |
119 |
aagtagcccaaacaattgatatcagtagaggaaccaaaatagccctcagctaaatacaagattcaactcttatcagggtgtatacaccgccaagagtcat |
218 |
Q |
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| T |
41715695 |
aagtagcccaaacaattgatatcagtagaggaaccaaaatagccctcagctaaatacaagattcaactcttatcagggtgtatacaccgccaagagtcat |
41715794 |
T |
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| Q |
219 |
ctgcagttagatcannnnnnnnactcagtcgcgagtacaattccacgttctgtattgtttagtttcat |
286 |
Q |
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| T |
41715795 |
ctgcagttagatcattttttttactcagttgcgagtacaattccacgttctgtattatttaggttcat |
41715862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 143 - 229
Target Start/End: Original strand, 41705861 - 41705947
Alignment:
| Q |
143 |
gtagaggaaccaaaatagccctcagctaaatacaagattcaactcttatcagggtgtatacaccgccaagagtcatctgcagttaga |
229 |
Q |
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| T |
41705861 |
gtagaggaaccaaaatagccctcggtaaaatacaagattcaactctattcaggatgtatacgctgcgaagagtcatctgcaattaga |
41705947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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