View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11473_low_3 (Length: 634)
Name: NF11473_low_3
Description: NF11473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11473_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 574; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 574; E-Value: 0
Query Start/End: Original strand, 20 - 629
Target Start/End: Complemental strand, 11370018 - 11369409
Alignment:
| Q |
20 |
cacctaatgtgtcaaatttcgtcaaaaaatgcaacttcaacttataaacatctcattacagcaacaaacactcatatacaatcattaattcttgcattgc |
119 |
Q |
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| T |
11370018 |
cacctaatgtgtcaaatttcgtcaaaaaatgcaacttcaacttataaacatctcattacagcaacaaacactcatacacaatcattaattcttgcattgc |
11369919 |
T |
|
| Q |
120 |
agccacttaaactgagcaaagatgcgcatcagtcaataataaataatcgattcataatatttcaaataccaaaatactgacttccaaaacataaataagg |
219 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11369918 |
agccacttaaactgagcaaagatgcgcatcaatcaataataaataatcgattcataatatttcaaataccaaaatactgacttccaaaacataaataagg |
11369819 |
T |
|
| Q |
220 |
aagaccaaaaaacaaagcttaattttattaaaccatgaccttagaccccaataagaaataaaatgagtagatgaaaacattaagagtatcttcaccttca |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
11369818 |
aagaccaaaaaacaaagcttaattttattaaaccatgaccttagaccccaataagaaatgaaatgagtagatgaaaacattaagagtatcttcaccttca |
11369719 |
T |
|
| Q |
320 |
cagccttcatcagaaactcagaaacgtaatagcttagagagataatactttcaccagaaagtctagaaggcggctcagaatccagtgtagcaaggatcct |
419 |
Q |
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|||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |
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| T |
11369718 |
cagcttgcatcagaaactcagaaacgtaatagcttagagagataatactttcaccagaaagtctagaaggcggctcagaatccattgtaacaaggatcct |
11369619 |
T |
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| Q |
420 |
tggcagacatgcagcattatgaaaagaacgctttcgcaactgatacaaaaaacaccataatagaaaataaataagcaccggagaaaagtagcgacggaca |
519 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11369618 |
tagcagacatgcagcattatgaaaagaacgctttcgcaactgatacaaaaaacaccataatagaaaataaataagcaccggagaaaagtagcgacggaca |
11369519 |
T |
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| Q |
520 |
ataaatagtcaaataaaatatcgatgtaaaagaaaatcagcggtcaacttactatctccttgattgtctttttctctacaagaagataattgtctccctt |
619 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11369518 |
ataaatagtcaaataaaatatcgatgtaaaagaaaatcagcggtcaacttactatctccttgattgtctttttctctacaagaagataattgtctccctt |
11369419 |
T |
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| Q |
620 |
cttctctgtc |
629 |
Q |
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||||| |||| |
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| T |
11369418 |
cttctgtgtc |
11369409 |
T |
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