View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11473_low_30 (Length: 284)

Name: NF11473_low_30
Description: NF11473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11473_low_30
NF11473_low_30
[»] chr7 (4 HSPs)
chr7 (20-214)||(36156193-36156388)
chr7 (191-276)||(36155945-36156030)
chr7 (148-195)||(36429589-36429636)
chr7 (124-188)||(5100816-5100883)
[»] chr4 (5 HSPs)
chr4 (123-195)||(19997140-19997214)
chr4 (118-195)||(8901547-8901625)
chr4 (118-179)||(8915393-8915454)
chr4 (46-103)||(19533922-19533979)
chr4 (59-103)||(20875359-20875403)
[»] chr5 (1 HSPs)
chr5 (54-103)||(30119001-30119050)
[»] chr8 (1 HSPs)
chr8 (59-103)||(10536876-10536920)
[»] chr1 (1 HSPs)
chr1 (59-103)||(22328074-22328118)


Alignment Details
Target: chr7 (Bit Score: 164; Significance: 1e-87; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 20 - 214
Target Start/End: Complemental strand, 36156388 - 36156193
Alignment:
Q  20 gtcttatatgataaaaacattccattttatagaaagtttatattttgaaaatattcatggtgacaaattcaacaatatcttatagctactatttgtcttc 119  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36156388 gtcttatatgataaaaacattccattttatacaaagtttatattttgaaaatattcatggtgacaaattcaacaatatcttatagctactatttgtcttc 36156289  T
Q  120 aactatatatataagaaaataacatacataaattatcaaactaacccaa-tttaattaactgacacataagtaaaataaaaaataattgagttaga 214  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| || || ||||||||||||||||| |||||||||||||    
T  36156288 aactatatatttaagaaaataacatacataaattatcaaactaacccaattttaattatctaactcataagtaaaataaaaattaattgagttaga 36156193  T

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Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 191 - 276
Target Start/End: Complemental strand, 36156030 - 36155945
Alignment:
Q  191 aaaataaaaaataattgagttagagttaaatttcctatttatattccactaaacatgcaaaatcttatctctattgaattcttctc 276  Q
    |||||||||| ||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||| |||||    
T  36156030 aaaataaaaattaattgagttagagttaaatttcctatttttattctactaaacaagcaaaatcttatctctattgaatttttctc 36155945  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 148 - 195
Target Start/End: Complemental strand, 36429636 - 36429589
Alignment:
Q  148 taaattatcaaactaacccaatttaattaactgacacataagtaaaat 195  Q
    |||| |||||||||||||||||||||| |||||| ||||||| |||||    
T  36429636 taaactatcaaactaacccaatttaatcaactgatacataagcaaaat 36429589  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 188
Target Start/End: Original strand, 5100816 - 5100883
Alignment:
Q  124 atatatataagaaaataacatac---ataaattatcaaactaacccaatttaattaactgacacataa 188  Q
    |||||| || |||||||||||||   ||||||||||||| ||| |  |||||||||||||||||||||    
T  5100816 atatatttaggaaaataacataccccataaattatcaaattaatcatatttaattaactgacacataa 5100883  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 123 - 195
Target Start/End: Complemental strand, 19997214 - 19997140
Alignment:
Q  123 tatatatataagaaaataacataca---taaattatcaaactaacccaatttaattaactgacacataagtaaaat 195  Q
    ||||||||||||||||||| ||| |   |||||||||||| ||||| |||||||||||||||| |||||| |||||    
T  19997214 tatatatataagaaaataa-atagaagataaattatcaaattaaccaaatttaattaactgacgcataagcaaaat 19997140  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 118 - 195
Target Start/End: Original strand, 8901547 - 8901625
Alignment:
Q  118 tcaactatatatataagaaaataacat---acataaattatcaaactaacccaatttaattaactgacacataagtaaaat 195  Q
    |||| ||||||| ||||||||||||||   |||||||||||||||||||   ||||||||||  ||||||||||| |||||    
T  8901547 tcaattatatatttaagaaaataacatgcaacataaattatcaaactaa--aaatttaattagttgacacataagcaaaat 8901625  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 179
Target Start/End: Original strand, 8915393 - 8915454
Alignment:
Q  118 tcaactatatatataagaaaataacatacataaattatcaaactaacccaatttaattaact 179  Q
    |||| ||||||| ||| |||||||||||||| |||||| ||||| || ||| ||||||||||    
T  8915393 tcaattatatatttaataaaataacatacatgaattatgaaacttactcaaattaattaact 8915454  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 103
Target Start/End: Original strand, 19533922 - 19533979
Alignment:
Q  46 ttatagaaagtttatattttgaaaatattcatggtgacaaattcaacaatatcttata 103  Q
    ||||| ||| || ||||||| ||||||||||| | ||||||| |||||||||||||||    
T  19533922 ttataaaaatttgatattttaaaaatattcatcgagacaaatccaacaatatcttata 19533979  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 103
Target Start/End: Original strand, 20875359 - 20875403
Alignment:
Q  59 atattttgaaaatattcatggtgacaaattcaacaatatcttata 103  Q
    ||||||||||||||||||||| |||||||  ||||| ||||||||    
T  20875359 atattttgaaaatattcatggagacaaatcaaacaacatcttata 20875403  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 103
Target Start/End: Original strand, 30119001 - 30119050
Alignment:
Q  54 agtttatattttgaaaatattcatggtgacaaattcaacaatatcttata 103  Q
    |||| |||||| ||||||||| || | |||||||||||||||||||||||    
T  30119001 agttaatatttagaaaatatttatcgagacaaattcaacaatatcttata 30119050  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 103
Target Start/End: Complemental strand, 10536920 - 10536876
Alignment:
Q  59 atattttgaaaatattcatggtgacaaattcaacaatatcttata 103  Q
    ||||||||||||||||||| | ||| ||| |||||||||||||||    
T  10536920 atattttgaaaatattcatcgagacgaatccaacaatatcttata 10536876  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 103
Target Start/End: Original strand, 22328074 - 22328118
Alignment:
Q  59 atattttgaaaatattcatggtgacaaattcaacaatatcttata 103  Q
    ||||||||||||||||||| | ||| |||||||||| ||||||||    
T  22328074 atattttgaaaatattcatcgagacgaattcaacaacatcttata 22328118  T

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